Wall clock time and date at job start Tue Mar 31 2020 22:46:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08995 * 110.88342 * 2 1 4 4 C 1.55133 * 110.90526 * 124.09148 * 2 1 3 5 5 N 1.47421 * 104.72071 * 155.27303 * 4 2 1 6 6 C 1.34775 * 125.64607 * 155.81740 * 5 4 2 7 7 O 1.21543 * 120.00124 * 4.86383 * 6 5 4 8 8 C 1.47861 * 119.99863 * 184.86057 * 6 5 4 9 9 C 1.39615 * 120.11444 * 171.93560 * 8 6 5 10 10 C 1.37973 * 119.98587 * 180.02562 * 9 8 6 11 11 C 1.38265 * 120.22107 * 359.97438 * 10 9 8 12 12 C 1.38912 * 120.22059 * 359.77049 * 11 10 9 13 13 N 1.40228 * 119.98745 * 180.25811 * 12 11 10 14 14 C 1.36568 * 125.66397 * 179.97438 * 13 12 11 15 15 C 1.34853 * 108.19928 * 179.82894 * 14 13 12 16 16 C 1.40936 * 107.46959 * 0.42206 * 15 14 13 17 17 C 1.34856 * 107.46274 * 359.73948 * 16 15 14 18 18 C 1.38586 * 120.01505 * 0.50403 * 12 11 10 19 19 C 1.47020 * 108.70379 * 335.55530 * 5 4 2 20 20 C 1.54322 * 107.27155 * 1.28560 * 19 5 4 21 21 H 1.08997 * 110.72245 * 263.82856 * 20 19 5 22 22 N 1.46503 * 110.72086 * 140.55440 * 20 19 5 23 23 C 1.36941 * 119.99838 * 86.45341 * 22 20 19 24 24 H 1.07992 * 120.00226 * 0.02562 * 23 22 20 25 25 C 1.38819 * 119.99884 * 180.02562 * 23 22 20 26 26 N 1.31615 * 120.00018 * 359.97438 * 25 23 22 27 27 Si 1.86797 * 119.99779 * 180.02562 * 25 23 22 28 28 H 1.48503 * 109.47221 * 60.00169 * 27 25 23 29 29 H 1.48500 * 109.46920 * 179.97438 * 27 25 23 30 30 H 1.48495 * 109.47083 * 299.99958 * 27 25 23 31 31 H 1.08999 * 109.47279 * 183.88339 * 1 2 3 32 32 H 1.09000 * 109.47267 * 303.88277 * 1 2 3 33 33 H 1.09002 * 109.47050 * 63.87975 * 1 2 3 34 34 H 1.09002 * 110.49136 * 36.43336 * 4 2 1 35 35 H 1.08994 * 110.34597 * 274.03919 * 4 2 1 36 36 H 1.08002 * 120.00518 * 0.04974 * 9 8 6 37 37 H 1.08004 * 119.89104 * 180.02562 * 10 9 8 38 38 H 1.07997 * 119.88605 * 180.02562 * 11 10 9 39 39 H 1.07999 * 125.89916 * 359.96054 * 14 13 12 40 40 H 1.07999 * 126.26663 * 180.16464 * 15 14 13 41 41 H 1.07998 * 126.26910 * 179.73603 * 16 15 14 42 42 H 1.08002 * 125.89355 * 179.97438 * 17 16 15 43 43 H 1.08000 * 120.10623 * 179.74397 * 18 12 11 44 44 H 1.09005 * 109.88333 * 120.70035 * 19 5 4 45 45 H 1.08997 * 109.88649 * 241.86671 * 19 5 4 46 46 H 0.96995 * 119.99966 * 266.45597 * 22 20 19 47 47 H 0.96997 * 120.00376 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9186 1.0183 0.0000 4 6 2.0836 -0.8123 1.2002 5 7 3.4271 -1.2433 0.7730 6 6 4.4476 -1.5621 1.5936 7 8 4.2740 -1.5915 2.7962 8 6 5.7783 -1.8763 1.0308 9 6 6.8759 -2.0414 1.8778 10 6 8.1165 -2.3340 1.3498 11 6 8.2778 -2.4651 -0.0172 12 6 7.1908 -2.3078 -0.8677 13 7 7.3589 -2.4472 -2.2529 14 6 6.3751 -2.3181 -3.1913 15 6 6.9236 -2.5181 -4.4069 16 6 8.2929 -2.7899 -4.2136 17 6 8.5321 -2.7402 -2.8873 18 6 5.9415 -2.0082 -0.3480 19 6 3.4674 -1.2739 -0.6964 20 6 2.0861 -0.8075 -1.2024 21 1 1.4467 -1.6627 -1.4215 22 7 2.2286 0.0504 -2.3814 23 6 2.3034 -0.5081 -3.6295 24 1 2.2568 -1.5808 -3.7448 25 6 2.4389 0.3048 -4.7466 26 7 2.4951 1.6122 -4.6062 27 14 2.5401 -0.4570 -6.4492 28 1 1.3032 -1.2334 -6.7185 29 1 2.6804 0.6175 -7.4646 30 1 3.7166 -1.3605 -6.5181 31 1 -0.3634 -1.0253 0.0696 32 1 -0.3634 0.5729 0.8531 33 1 -0.3633 0.4524 -0.9227 34 1 1.4523 -1.6786 1.3982 35 1 2.1516 -0.1809 2.0860 36 1 6.7536 -1.9406 2.9461 37 1 8.9644 -2.4619 2.0064 38 1 9.2513 -2.6946 -0.4246 39 1 5.3375 -2.0925 -2.9941 40 1 6.4072 -2.4814 -5.3547 41 1 9.0179 -2.9995 -4.9861 42 1 9.4867 -2.9042 -2.4095 43 1 5.0963 -1.8815 -1.0082 44 1 4.2426 -0.5994 -1.0601 45 1 3.6650 -2.2890 -1.0408 46 1 2.2701 1.0139 -2.2779 47 1 2.5902 2.1803 -5.3867 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001054873750.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:46:31 Heat of formation + Delta-G solvation = 73.065447 kcal Electronic energy + Delta-G solvation = -29784.639412 eV Core-core repulsion = 25934.039996 eV Total energy + Delta-G solvation = -3850.599416 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -42.66741 -41.55927 -39.66283 -38.81070 -35.92438 -34.38041 -34.17940 -32.84334 -32.04759 -29.97558 -29.80161 -29.28204 -27.62843 -26.16464 -24.81058 -24.09857 -22.92229 -21.83988 -21.42825 -20.98466 -20.62361 -19.08301 -18.99432 -18.06859 -17.45964 -17.17545 -16.85707 -16.46377 -15.99288 -15.87654 -15.65323 -15.33630 -15.25275 -14.89362 -14.65578 -14.52535 -14.36088 -14.06275 -13.88365 -13.58026 -13.39853 -13.26042 -13.13918 -13.05151 -12.91203 -12.81418 -12.70174 -12.53251 -12.23653 -12.05355 -11.87725 -11.68485 -11.43693 -11.23410 -10.92850 -10.84283 -10.21029 -9.81430 -9.22382 -9.05863 -9.03993 -7.93325 -5.23070 -0.39445 -0.06087 1.31516 1.51136 1.52487 1.57341 1.76861 1.78593 1.85842 2.03941 2.57291 2.72746 3.16893 3.36636 3.53565 3.67822 3.75572 3.80545 3.88077 4.02968 4.05798 4.12368 4.16718 4.23584 4.27218 4.38913 4.43245 4.51526 4.55432 4.62087 4.69094 4.75194 4.75963 4.83062 4.94242 5.03417 5.06407 5.09807 5.17116 5.27102 5.29291 5.30652 5.37485 5.46623 5.55873 5.61246 5.94583 6.18007 6.25884 6.31475 6.46617 6.91129 7.35508 8.04980 8.29645 9.29123 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.007477 B = 0.005670 C = 0.003343 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3744.072509 B = 4936.802795 C = 8374.578460 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.103 4.103 3 H 0.073 0.927 4 C 0.116 3.884 5 N -0.606 5.606 6 C 0.567 3.433 7 O -0.571 6.571 8 C -0.122 4.122 9 C -0.081 4.081 10 C -0.087 4.087 11 C -0.110 4.110 12 C 0.116 3.884 13 N -0.401 5.401 14 C -0.032 4.032 15 C -0.205 4.205 16 C -0.200 4.200 17 C -0.015 4.015 18 C -0.157 4.157 19 C 0.078 3.922 20 C 0.170 3.830 21 H 0.073 0.927 22 N -0.718 5.718 23 C -0.240 4.240 24 H 0.080 0.920 25 C -0.059 4.059 26 N -0.964 5.964 27 Si 0.957 3.043 28 H -0.280 1.280 29 H -0.302 1.302 30 H -0.273 1.273 31 H 0.067 0.933 32 H 0.073 0.927 33 H 0.048 0.952 34 H 0.086 0.914 35 H 0.079 0.921 36 H 0.145 0.855 37 H 0.180 0.820 38 H 0.166 0.834 39 H 0.154 0.846 40 H 0.134 0.866 41 H 0.163 0.837 42 H 0.203 0.797 43 H 0.162 0.838 44 H 0.064 0.936 45 H 0.072 0.928 46 H 0.376 0.624 47 H 0.250 0.750 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.421 -9.399 10.553 17.559 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.123 4.123 3 H 0.091 0.909 4 C -0.006 4.006 5 N -0.337 5.337 6 C 0.358 3.642 7 O -0.453 6.453 8 C -0.125 4.125 9 C -0.100 4.100 10 C -0.105 4.105 11 C -0.129 4.129 12 C 0.024 3.976 13 N -0.074 5.074 14 C -0.158 4.158 15 C -0.229 4.229 16 C -0.224 4.224 17 C -0.141 4.141 18 C -0.176 4.176 19 C -0.048 4.048 20 C 0.059 3.941 21 H 0.091 0.909 22 N -0.357 5.357 23 C -0.371 4.371 24 H 0.098 0.902 25 C -0.253 4.253 26 N -0.614 5.614 27 Si 0.786 3.214 28 H -0.206 1.206 29 H -0.229 1.229 30 H -0.199 1.199 31 H 0.086 0.914 32 H 0.092 0.908 33 H 0.067 0.933 34 H 0.104 0.896 35 H 0.098 0.902 36 H 0.163 0.837 37 H 0.197 0.803 38 H 0.184 0.816 39 H 0.172 0.828 40 H 0.152 0.848 41 H 0.180 0.820 42 H 0.220 0.780 43 H 0.178 0.822 44 H 0.082 0.918 45 H 0.090 0.910 46 H 0.208 0.792 47 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges 10.316 -9.515 11.325 18.034 hybrid contribution -0.309 0.457 -1.494 1.592 sum 10.007 -9.059 9.832 16.699 Atomic orbital electron populations 1.21568 0.92025 1.02780 1.02131 1.22581 0.97750 0.98735 0.93238 0.90903 1.22451 0.81778 0.98840 0.97530 1.48423 1.12662 1.65273 1.07381 1.18208 0.83965 0.76690 0.85319 1.90713 1.84262 1.55182 1.15102 1.19702 0.94002 1.05612 0.93193 1.21515 0.91547 0.96251 1.00679 1.21386 0.97646 0.97167 0.94285 1.21444 0.98148 0.99832 0.93485 1.18075 0.95479 1.02227 0.81803 1.41749 1.09247 1.53009 1.03366 1.22050 0.94894 1.10101 0.88771 1.21223 0.96293 1.08486 0.96904 1.21296 0.96032 1.09026 0.96007 1.22468 0.90625 1.08213 0.92812 1.22561 0.98611 1.00321 0.96126 1.23462 1.02203 1.00472 0.78628 1.21489 0.91950 0.94016 0.86625 0.90869 1.42438 1.87006 1.05134 1.01128 1.19495 1.41044 0.92150 0.84439 0.90231 1.25376 1.03280 0.95614 1.00986 1.69783 1.58547 1.03503 1.29560 0.85462 0.78391 0.77017 0.80498 1.20579 1.22871 1.19855 0.91354 0.90837 0.93272 0.89584 0.90230 0.83698 0.80260 0.81640 0.82825 0.84779 0.81965 0.78029 0.82157 0.91761 0.91034 0.79170 0.94144 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.23 9.31 71.98 0.67 -2.56 16 2 C -0.10 -3.05 3.26 -9.32 -0.03 -3.08 16 3 H 0.07 2.35 8.00 -2.39 -0.02 2.33 16 4 C 0.12 3.22 6.36 86.93 0.55 3.77 16 5 N -0.61 -19.14 3.32 -825.66 -2.75 -21.88 16 6 C 0.57 18.78 7.81 86.79 0.68 19.46 16 7 O -0.57 -21.04 16.67 -3.85 -0.06 -21.11 16 8 C -0.12 -3.54 5.87 -20.10 -0.12 -3.66 16 9 C -0.08 -1.85 9.59 22.54 0.22 -1.64 16 10 C -0.09 -1.44 10.02 22.21 0.22 -1.21 16 11 C -0.11 -2.04 9.45 22.44 0.21 -1.83 16 12 C 0.12 3.08 6.61 38.04 0.25 3.33 16 13 N -0.40 -11.40 2.97 -346.78 -1.03 -12.44 16 14 C -0.03 -1.06 10.73 83.18 0.89 -0.17 16 15 C -0.20 -6.56 10.86 22.15 0.24 -6.32 16 16 C -0.20 -5.12 10.86 22.15 0.24 -4.88 16 17 C -0.02 -0.36 10.73 83.18 0.89 0.53 16 18 C -0.16 -4.66 8.00 22.65 0.18 -4.48 16 19 C 0.08 2.59 4.62 86.73 0.40 2.99 16 20 C 0.17 5.97 3.06 46.18 0.14 6.11 16 21 H 0.07 2.53 8.02 -2.39 -0.02 2.51 16 22 N -0.72 -32.49 5.18 -317.33 -1.64 -34.13 16 23 C -0.24 -12.06 9.98 84.03 0.84 -11.22 16 24 H 0.08 3.81 7.83 -2.91 -0.02 3.79 16 25 C -0.06 -3.20 5.50 84.86 0.47 -2.73 16 26 N -0.96 -56.20 13.06 21.65 0.28 -55.91 16 27 Si 0.96 43.94 29.55 68.60 2.03 45.96 16 28 H -0.28 -12.43 7.11 99.48 0.71 -11.73 16 29 H -0.30 -14.33 7.11 99.48 0.71 -13.62 16 30 H -0.27 -12.00 7.11 99.48 0.71 -11.30 16 31 H 0.07 1.54 8.07 -2.39 -0.02 1.52 16 32 H 0.07 1.54 8.14 -2.39 -0.02 1.52 16 33 H 0.05 1.46 8.14 -2.39 -0.02 1.44 16 34 H 0.09 2.13 7.99 -2.39 -0.02 2.11 16 35 H 0.08 2.17 8.09 -2.39 -0.02 2.15 16 36 H 0.15 3.13 7.67 -2.91 -0.02 3.10 16 37 H 0.18 1.45 8.06 -2.91 -0.02 1.43 16 38 H 0.17 1.93 6.69 -2.91 -0.02 1.91 16 39 H 0.15 5.53 7.00 -2.91 -0.02 5.51 16 40 H 0.13 4.32 8.06 -2.91 -0.02 4.29 16 41 H 0.16 3.21 8.06 -2.91 -0.02 3.19 16 42 H 0.20 2.80 7.00 -2.91 -0.02 2.78 16 43 H 0.16 5.18 1.42 -7.11 -0.01 5.17 16 44 H 0.06 2.42 6.57 -2.38 -0.02 2.41 16 45 H 0.07 2.30 6.79 -2.39 -0.02 2.28 16 46 H 0.38 18.75 7.71 -92.71 -0.72 18.04 16 47 H 0.25 14.39 8.31 -92.71 -0.77 13.62 16 Total: -1.00 -66.69 382.31 4.06 -62.63 By element: Atomic # 1 Polarization: 44.18 SS G_CDS: 0.28 Total: 44.46 kcal Atomic # 6 Polarization: -14.53 SS G_CDS: 6.95 Total: -7.58 kcal Atomic # 7 Polarization: -119.23 SS G_CDS: -5.14 Total: -124.37 kcal Atomic # 8 Polarization: -21.04 SS G_CDS: -0.06 Total: -21.11 kcal Atomic # 14 Polarization: 43.94 SS G_CDS: 2.03 Total: 45.96 kcal Total: -66.69 4.06 -62.63 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054873750.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 135.695 kcal (2) G-P(sol) polarization free energy of solvation -66.689 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.006 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.059 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.630 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.065 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds