Wall clock time and date at job start Tue Mar 31 2020 22:47:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09003 * 110.63634 * 2 1 4 4 C 1.54335 * 110.85139 * 236.83539 * 2 1 3 5 5 N 1.47019 * 107.26324 * 219.67258 * 4 2 1 6 6 C 1.34781 * 125.64695 * 178.84993 * 5 4 2 7 7 O 1.21283 * 119.99820 * 359.71286 * 6 5 4 8 8 C 1.50694 * 120.00024 * 179.71815 * 6 5 4 9 9 C 1.50700 * 109.47242 * 179.97438 * 8 6 5 10 10 C 1.36175 * 120.19392 * 264.99879 * 9 8 6 11 11 C 1.39311 * 120.86963 * 179.72056 * 10 9 8 12 12 C 1.36108 * 121.06834 * 359.97438 * 11 10 9 13 13 C 1.40560 * 119.74958 * 0.02562 * 12 11 10 14 14 N 1.33689 * 121.08271 * 179.97438 * 13 12 11 15 15 C 1.31078 * 121.31880 * 180.02562 * 14 13 12 16 16 C 1.39335 * 121.75683 * 0.02562 * 15 14 13 17 17 C 1.36576 * 119.93745 * 0.02562 * 16 15 14 18 18 C 1.40387 * 120.19150 * 84.72139 * 9 8 6 19 19 C 1.47425 * 108.70633 * 358.58249 * 5 4 2 20 20 C 1.54909 * 104.82796 * 24.35883 * 19 5 4 21 21 H 1.08999 * 111.00999 * 81.06884 * 20 19 5 22 22 N 1.46499 * 111.00277 * 204.91776 * 20 19 5 23 23 C 1.36945 * 119.99826 * 273.54582 * 22 20 19 24 24 H 1.07995 * 119.99831 * 359.97438 * 23 22 20 25 25 C 1.38815 * 119.99743 * 180.02562 * 23 22 20 26 26 N 1.31617 * 120.00171 * 359.97438 * 25 23 22 27 27 Si 1.86802 * 119.99553 * 180.02562 * 25 23 22 28 28 H 1.48502 * 109.47531 * 359.97438 * 27 25 23 29 29 H 1.48506 * 109.47218 * 120.00047 * 27 25 23 30 30 H 1.48506 * 109.46919 * 239.99433 * 27 25 23 31 31 H 1.08995 * 109.47199 * 296.85758 * 1 2 3 32 32 H 1.09001 * 109.47100 * 56.85765 * 1 2 3 33 33 H 1.08996 * 109.47066 * 176.85648 * 1 2 3 34 34 H 1.08995 * 109.99400 * 100.19568 * 4 2 1 35 35 H 1.08999 * 109.77531 * 339.02577 * 4 2 1 36 36 H 1.09004 * 109.47589 * 59.99381 * 8 6 5 37 37 H 1.09003 * 109.47368 * 299.99550 * 8 6 5 38 38 H 1.07997 * 119.56380 * 359.74448 * 10 9 8 39 39 H 1.07998 * 119.46512 * 180.02562 * 11 10 9 40 40 H 1.08002 * 120.12799 * 180.02562 * 12 11 10 41 41 H 1.08005 * 119.12158 * 179.97438 * 15 14 13 42 42 H 1.07997 * 120.03047 * 180.02562 * 16 15 14 43 43 H 1.08000 * 120.92443 * 180.02562 * 17 16 15 44 44 H 1.08998 * 110.36757 * 143.19149 * 19 5 4 45 45 H 1.08995 * 110.36989 * 265.40939 * 19 5 4 46 46 H 0.97001 * 120.00514 * 93.54206 * 22 20 19 47 47 H 0.96997 * 119.99813 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9142 1.0201 0.0000 4 6 2.0794 -0.7890 -1.2073 5 7 3.2445 -1.5519 -0.7363 6 6 3.9924 -2.3860 -1.4857 7 8 3.7193 -2.5608 -2.6544 8 6 5.1677 -3.1016 -0.8714 9 6 5.8297 -3.9664 -1.9129 10 6 5.5004 -5.2834 -2.0196 11 6 6.0993 -6.0944 -2.9810 12 6 7.0289 -5.5952 -3.8407 13 6 7.3954 -4.2405 -3.7621 14 7 8.3059 -3.7224 -4.5927 15 6 8.6515 -2.4600 -4.5231 16 6 8.0908 -1.5969 -3.5839 17 6 7.1551 -2.0616 -2.7042 18 6 6.7853 -3.4176 -2.7828 19 6 3.4633 -1.2485 0.6897 20 6 2.0790 -0.7934 1.2151 21 1 1.4452 -1.6511 1.4404 22 7 2.2214 0.0737 2.3873 23 6 2.3174 -0.4759 3.6379 24 1 2.2877 -1.5485 3.7601 25 6 2.4518 0.3457 4.7487 26 7 2.4876 1.6530 4.5998 27 14 2.5835 -0.4041 6.4545 28 1 2.5182 -1.8841 6.3512 29 1 3.8746 -0.0070 7.0715 30 1 1.4618 0.0829 7.2972 31 1 -0.3633 0.4642 0.9168 32 1 -0.3633 0.5619 -0.8605 33 1 -0.3633 -1.0261 -0.0564 34 1 2.3814 -0.1003 -1.9963 35 1 1.3156 -1.4713 -1.5803 36 1 4.8228 -3.7258 -0.0470 37 1 5.8840 -2.3697 -0.4978 38 1 4.7650 -5.7047 -1.3502 39 1 5.8208 -7.1358 -3.0458 40 1 7.4833 -6.2375 -4.5806 41 1 9.3911 -2.0787 -5.2116 42 1 8.3958 -0.5614 -3.5516 43 1 6.7099 -1.4066 -1.9700 44 1 3.7960 -2.1404 1.2206 45 1 4.1946 -0.4477 0.7993 46 1 2.2478 1.0372 2.2777 47 1 2.5819 2.2270 5.3760 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001054895724.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:47:28 Heat of formation + Delta-G solvation = 13.226599 kcal Electronic energy + Delta-G solvation = -28732.509051 eV Core-core repulsion = 24879.314828 eV Total energy + Delta-G solvation = -3853.194223 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -42.01357 -41.01608 -39.09194 -38.01984 -35.84582 -35.12132 -33.97258 -32.58958 -32.18443 -31.49287 -29.25056 -29.03005 -26.90172 -25.83390 -25.18340 -24.56607 -23.18703 -22.14450 -21.29207 -20.20017 -19.11473 -19.05532 -18.15700 -18.03434 -17.96146 -17.32393 -16.60577 -16.29809 -15.71117 -15.53133 -15.35220 -15.26320 -15.15844 -14.73774 -14.51916 -14.44933 -14.32679 -14.18277 -13.95673 -13.83462 -13.30314 -13.06761 -12.97105 -12.86641 -12.85760 -12.64191 -12.55259 -12.20644 -12.16064 -12.09670 -11.98099 -11.69037 -11.51159 -11.37291 -11.05552 -10.88556 -10.51158 -9.72844 -9.68958 -9.17308 -9.01982 -7.92523 -5.21817 -0.59962 -0.13150 0.96262 1.51144 1.53051 1.55871 1.61394 1.86858 2.10082 2.58694 3.09785 3.35986 3.39664 3.42327 3.45237 3.76163 3.80450 3.82261 3.86219 3.90959 3.95677 4.09265 4.18385 4.20925 4.28673 4.38874 4.45795 4.48567 4.51409 4.58656 4.59250 4.68866 4.84729 4.88663 4.91478 4.99472 5.06291 5.10121 5.12921 5.13994 5.21760 5.34828 5.39455 5.46256 5.48188 5.58616 5.59178 5.90990 6.28530 6.49278 6.90937 7.09438 7.36778 8.08101 8.31959 9.30467 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.013869 B = 0.002604 C = 0.002490 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2018.400906 B =10749.319605 C =11241.832057 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.103 4.103 3 H 0.078 0.922 4 C 0.120 3.880 5 N -0.612 5.612 6 C 0.529 3.471 7 O -0.576 6.576 8 C -0.098 4.098 9 C -0.054 4.054 10 C -0.113 4.113 11 C -0.092 4.092 12 C -0.112 4.112 13 C 0.099 3.901 14 N -0.501 5.501 15 C 0.124 3.876 16 C -0.174 4.174 17 C -0.072 4.072 18 C -0.106 4.106 19 C 0.084 3.916 20 C 0.171 3.829 21 H 0.063 0.937 22 N -0.720 5.720 23 C -0.237 4.237 24 H 0.081 0.919 25 C -0.069 4.069 26 N -0.966 5.966 27 Si 0.965 3.035 28 H -0.264 1.264 29 H -0.297 1.297 30 H -0.299 1.299 31 H 0.048 0.952 32 H 0.071 0.929 33 H 0.060 0.940 34 H 0.065 0.935 35 H 0.070 0.930 36 H 0.128 0.872 37 H 0.116 0.884 38 H 0.147 0.853 39 H 0.162 0.838 40 H 0.145 0.855 41 H 0.191 0.809 42 H 0.167 0.833 43 H 0.139 0.861 44 H 0.082 0.918 45 H 0.064 0.936 46 H 0.376 0.624 47 H 0.250 0.750 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.756 -10.544 -15.342 20.167 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.123 4.123 3 H 0.097 0.903 4 C -0.003 4.003 5 N -0.345 5.345 6 C 0.319 3.681 7 O -0.457 6.457 8 C -0.137 4.137 9 C -0.056 4.056 10 C -0.131 4.131 11 C -0.112 4.112 12 C -0.131 4.131 13 C -0.021 4.021 14 N -0.210 5.210 15 C -0.049 4.049 16 C -0.193 4.193 17 C -0.097 4.097 18 C -0.108 4.108 19 C -0.042 4.042 20 C 0.061 3.939 21 H 0.081 0.919 22 N -0.359 5.359 23 C -0.368 4.368 24 H 0.099 0.901 25 C -0.262 4.262 26 N -0.617 5.617 27 Si 0.795 3.205 28 H -0.188 1.188 29 H -0.224 1.224 30 H -0.227 1.227 31 H 0.067 0.933 32 H 0.090 0.910 33 H 0.079 0.921 34 H 0.083 0.917 35 H 0.088 0.912 36 H 0.146 0.854 37 H 0.134 0.866 38 H 0.164 0.836 39 H 0.179 0.821 40 H 0.163 0.837 41 H 0.208 0.792 42 H 0.184 0.816 43 H 0.157 0.843 44 H 0.101 0.899 45 H 0.082 0.918 46 H 0.209 0.791 47 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges 7.969 -11.471 -16.445 21.576 hybrid contribution -0.315 1.106 1.713 2.064 sum 7.654 -10.365 -14.732 19.571 Atomic orbital electron populations 1.21626 0.92811 1.02273 1.02024 1.22385 0.97368 0.99171 0.93358 0.90323 1.21958 0.87576 0.94337 0.96439 1.48552 1.30101 1.43756 1.12082 1.20507 0.83592 0.78526 0.85489 1.90697 1.71952 1.65190 1.17821 1.20712 0.95224 0.99765 0.98016 1.19268 0.95533 0.94774 0.95989 1.21143 0.99614 0.93069 0.99238 1.21204 0.94800 1.01528 0.93644 1.21033 0.98742 0.92752 1.00539 1.19204 0.94628 0.95443 0.92869 1.68062 1.13527 1.15479 1.23892 1.23544 0.96959 0.88268 0.96083 1.22232 0.97742 1.03036 0.96339 1.21712 0.95533 0.93992 0.98508 1.18858 0.98810 0.95256 0.97851 1.23235 1.00973 1.01090 0.78908 1.21498 0.92906 0.93383 0.86158 0.91887 1.42408 1.87049 1.05116 1.01376 1.19627 1.40334 0.92238 0.84626 0.90126 1.25464 1.03678 0.95732 1.01293 1.69801 1.58953 1.03214 1.29687 0.85195 0.76383 0.78251 0.80639 1.18797 1.22394 1.22660 0.93250 0.91040 0.92079 0.91701 0.91161 0.85366 0.86632 0.83572 0.82092 0.83674 0.79245 0.81589 0.84282 0.89927 0.91784 0.79086 0.94111 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.35 9.16 71.98 0.66 -2.69 16 2 C -0.10 -2.94 3.16 -9.60 -0.03 -2.97 16 3 H 0.08 2.36 7.99 -2.39 -0.02 2.34 16 4 C 0.12 3.25 6.48 86.73 0.56 3.81 16 5 N -0.61 -17.10 3.33 -811.79 -2.70 -19.80 16 6 C 0.53 15.11 7.84 87.65 0.69 15.79 16 7 O -0.58 -20.53 16.36 -3.04 -0.05 -20.58 16 8 C -0.10 -2.17 4.25 29.10 0.12 -2.05 16 9 C -0.05 -1.32 4.38 -19.82 -0.09 -1.41 16 10 C -0.11 -2.36 9.58 22.05 0.21 -2.15 16 11 C -0.09 -1.74 9.94 22.03 0.22 -1.52 16 12 C -0.11 -2.51 9.98 22.34 0.22 -2.29 16 13 C 0.10 2.65 6.60 40.29 0.27 2.92 16 14 N -0.50 -12.86 10.34 -188.63 -1.95 -14.81 16 15 C 0.12 2.45 11.14 85.07 0.95 3.40 16 16 C -0.17 -3.30 10.03 22.14 0.22 -3.08 16 17 C -0.07 -1.67 9.37 22.50 0.21 -1.45 16 18 C -0.11 -2.79 5.74 -21.28 -0.12 -2.91 16 19 C 0.08 2.46 6.38 86.85 0.55 3.01 16 20 C 0.17 5.78 3.14 46.38 0.15 5.92 16 21 H 0.06 2.18 8.03 -2.39 -0.02 2.16 16 22 N -0.72 -31.79 5.28 -316.38 -1.67 -33.46 16 23 C -0.24 -11.72 9.98 84.03 0.84 -10.88 16 24 H 0.08 3.80 7.83 -2.91 -0.02 3.78 16 25 C -0.07 -3.65 5.50 84.86 0.47 -3.19 16 26 N -0.97 -55.29 13.06 21.65 0.28 -55.01 16 27 Si 0.97 43.04 29.55 68.60 2.03 45.07 16 28 H -0.26 -10.92 7.11 99.48 0.71 -10.21 16 29 H -0.30 -13.39 7.11 99.48 0.71 -12.68 16 30 H -0.30 -13.62 7.11 99.48 0.71 -12.91 16 31 H 0.05 1.47 8.14 -2.39 -0.02 1.45 16 32 H 0.07 1.54 8.14 -2.39 -0.02 1.52 16 33 H 0.06 1.47 8.07 -2.39 -0.02 1.45 16 34 H 0.06 1.74 8.14 -2.39 -0.02 1.72 16 35 H 0.07 1.87 7.77 -2.39 -0.02 1.85 16 36 H 0.13 2.30 7.75 -2.38 -0.02 2.28 16 37 H 0.12 2.28 6.73 -2.39 -0.02 2.26 16 38 H 0.15 2.37 8.05 -2.91 -0.02 2.35 16 39 H 0.16 1.90 8.06 -2.91 -0.02 1.87 16 40 H 0.15 2.71 8.06 -2.91 -0.02 2.69 16 41 H 0.19 2.24 8.06 -2.91 -0.02 2.22 16 42 H 0.17 2.02 8.06 -2.91 -0.02 1.99 16 43 H 0.14 2.94 6.57 -2.91 -0.02 2.92 16 44 H 0.08 2.24 7.48 -2.39 -0.02 2.22 16 45 H 0.06 2.01 8.14 -2.39 -0.02 1.99 16 46 H 0.38 18.19 7.71 -92.71 -0.71 17.48 16 47 H 0.25 14.02 8.31 -92.71 -0.77 13.25 16 Total: -1.00 -68.63 388.98 2.31 -66.32 By element: Atomic # 1 Polarization: 33.72 SS G_CDS: 0.27 Total: 33.99 kcal Atomic # 6 Polarization: -7.83 SS G_CDS: 6.10 Total: -1.73 kcal Atomic # 7 Polarization: -117.04 SS G_CDS: -6.04 Total: -123.08 kcal Atomic # 8 Polarization: -20.53 SS G_CDS: -0.05 Total: -20.58 kcal Atomic # 14 Polarization: 43.04 SS G_CDS: 2.03 Total: 45.07 kcal Total: -68.63 2.31 -66.32 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054895724.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.548 kcal (2) G-P(sol) polarization free energy of solvation -68.631 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.917 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.309 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.321 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.227 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds