Wall clock time and date at job start Tue Mar 31 2020 22:47:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08999 * 110.89024 * 2 1 4 4 C 1.55134 * 110.93755 * 124.07896 * 2 1 3 5 5 N 1.47424 * 104.72370 * 155.28658 * 4 2 1 6 6 C 1.34776 * 125.64887 * 155.81246 * 5 4 2 7 7 O 1.21278 * 119.99655 * 359.72199 * 6 5 4 8 8 C 1.50697 * 119.99784 * 179.71744 * 6 5 4 9 9 C 1.50706 * 109.46931 * 180.02562 * 8 6 5 10 10 C 1.36179 * 120.19002 * 265.00080 * 9 8 6 11 11 C 1.39312 * 120.86683 * 179.97438 * 10 9 8 12 12 C 1.36110 * 121.06561 * 359.97438 * 11 10 9 13 13 C 1.40551 * 119.75024 * 0.02562 * 12 11 10 14 14 N 1.33692 * 121.07853 * 179.97438 * 13 12 11 15 15 C 1.31083 * 121.31809 * 180.02562 * 14 13 12 16 16 C 1.39337 * 121.75435 * 359.97438 * 15 14 13 17 17 C 1.36573 * 119.94039 * 0.02562 * 16 15 14 18 18 C 1.40378 * 120.19439 * 84.72200 * 9 8 6 19 19 C 1.47026 * 108.70245 * 335.55369 * 5 4 2 20 20 C 1.54326 * 107.27011 * 1.28462 * 19 5 4 21 21 H 1.09003 * 110.72374 * 263.65467 * 20 19 5 22 22 N 1.46500 * 110.71718 * 140.55717 * 20 19 5 23 23 C 1.36941 * 119.99819 * 86.45588 * 22 20 19 24 24 H 1.07997 * 119.99915 * 0.02562 * 23 22 20 25 25 C 1.38819 * 119.99449 * 179.97438 * 23 22 20 26 26 N 1.31609 * 120.00458 * 0.02562 * 25 23 22 27 27 Si 1.86801 * 119.99454 * 179.97438 * 25 23 22 28 28 H 1.48499 * 109.47254 * 0.02562 * 27 25 23 29 29 H 1.48501 * 109.47058 * 120.00144 * 27 25 23 30 30 H 1.48509 * 109.46908 * 240.00243 * 27 25 23 31 31 H 1.08997 * 109.47656 * 183.88004 * 1 2 3 32 32 H 1.09002 * 109.46805 * 303.88141 * 1 2 3 33 33 H 1.08996 * 109.47139 * 63.87759 * 1 2 3 34 34 H 1.09004 * 110.49435 * 36.44540 * 4 2 1 35 35 H 1.09000 * 110.33865 * 274.05242 * 4 2 1 36 36 H 1.08998 * 109.47496 * 60.00525 * 8 6 5 37 37 H 1.09005 * 109.47284 * 300.00061 * 8 6 5 38 38 H 1.08004 * 119.56584 * 359.97438 * 10 9 8 39 39 H 1.08001 * 119.46686 * 179.97438 * 11 10 9 40 40 H 1.08003 * 120.11924 * 179.97438 * 12 11 10 41 41 H 1.08000 * 119.11875 * 179.97438 * 15 14 13 42 42 H 1.08000 * 120.02602 * 180.02562 * 16 15 14 43 43 H 1.08000 * 120.92802 * 179.97438 * 17 16 15 44 44 H 1.09000 * 109.88270 * 120.69994 * 19 5 4 45 45 H 1.08997 * 109.88129 * 241.71801 * 19 5 4 46 46 H 0.97007 * 120.00027 * 266.44635 * 22 20 19 47 47 H 0.96995 * 120.00383 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9187 1.0183 0.0000 4 6 2.0844 -0.8119 1.2001 5 7 3.4280 -1.2423 0.7725 6 6 4.4489 -1.5604 1.5928 7 8 4.3024 -1.4991 2.7952 8 6 5.7724 -1.9924 1.0160 9 6 6.7358 -2.2891 2.1363 10 6 7.6047 -1.3317 2.5639 11 6 8.5009 -1.5905 3.5986 12 6 8.5340 -2.8052 4.2117 13 6 7.6528 -3.8192 3.7986 14 7 7.6628 -5.0222 4.3819 15 6 6.8434 -5.9714 4.0000 16 6 5.9236 -5.7764 2.9717 17 6 5.8606 -4.5708 2.3331 18 6 6.7388 -3.5521 2.7490 19 6 3.4678 -1.2732 -0.6969 20 6 2.0861 -0.8075 -1.2025 21 1 1.4481 -1.6631 -1.4241 22 7 2.2278 0.0502 -2.3817 23 6 2.3024 -0.5085 -3.6297 24 1 2.2562 -1.5813 -3.7447 25 6 2.4361 0.3043 -4.7471 26 7 2.4918 1.6118 -4.6070 27 14 2.5385 -0.4578 -6.4495 28 1 2.4536 -1.9360 -6.3360 29 1 1.4146 0.0396 -7.2829 30 1 3.8283 -0.0828 -7.0829 31 1 -0.3634 -1.0252 0.0695 32 1 -0.3633 0.5729 0.8532 33 1 -0.3633 0.4525 -0.9227 34 1 1.4536 -1.6785 1.3985 35 1 2.1523 -0.1802 2.0858 36 1 6.1748 -1.1943 0.3922 37 1 5.6304 -2.8889 0.4124 38 1 7.5990 -0.3589 2.0946 39 1 9.1803 -0.8147 3.9194 40 1 9.2353 -2.9894 5.0121 41 1 6.8823 -6.9301 4.4957 42 1 5.2613 -6.5780 2.6799 43 1 5.1541 -4.4024 1.5337 44 1 4.2425 -0.5983 -1.0609 45 1 3.6684 -2.2877 -1.0410 46 1 2.2687 1.0139 -2.2784 47 1 2.5857 2.1797 -5.3877 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001054895726.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:47:37 Heat of formation + Delta-G solvation = 31.523961 kcal Electronic energy + Delta-G solvation = -28739.528632 eV Core-core repulsion = 24887.127842 eV Total energy + Delta-G solvation = -3852.400790 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.12775 -39.81847 -37.87719 -37.07585 -34.23670 -34.13025 -32.62457 -31.39017 -30.76725 -30.66947 -28.22797 -27.54377 -25.80513 -24.36567 -24.03547 -23.73502 -21.87535 -21.05192 -20.02606 -19.01857 -18.25859 -17.28325 -17.19059 -17.07693 -16.91196 -16.00997 -15.28923 -14.98922 -14.74562 -14.45109 -14.41366 -14.00765 -13.85029 -13.62641 -13.48405 -13.18196 -13.14538 -13.01979 -12.70339 -12.57245 -12.22301 -11.98706 -11.78999 -11.72014 -11.59865 -11.35358 -11.21259 -11.06727 -10.81962 -10.67005 -10.62668 -10.30170 -10.02923 -9.87140 -9.73023 -9.64623 -9.08230 -8.89160 -8.40538 -8.29852 -7.17145 -5.92297 -3.23505 0.24632 0.70735 1.84887 2.73325 2.76236 3.20730 3.33748 3.40085 3.42123 3.98936 4.13919 4.31467 4.44945 4.57644 4.64036 4.66473 4.67757 4.89086 5.00691 5.01413 5.06436 5.11005 5.16336 5.22828 5.37269 5.39489 5.49117 5.56046 5.67898 5.69851 5.76289 5.80798 5.84534 5.86459 5.92474 5.94327 6.12457 6.18652 6.22509 6.29405 6.31995 6.40868 6.41455 6.48171 6.55230 6.71756 6.79672 7.56386 7.71655 7.75462 8.24436 8.29154 9.37227 9.90626 10.25405 11.29545 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.013908 B = 0.002609 C = 0.002494 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2012.812019 B =10727.914015 C =11224.379620 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.113 4.113 3 H 0.084 0.916 4 C 0.114 3.886 5 N -0.613 5.613 6 C 0.528 3.472 7 O -0.544 6.544 8 C -0.105 4.105 9 C -0.035 4.035 10 C -0.106 4.106 11 C -0.094 4.094 12 C -0.099 4.099 13 C 0.127 3.873 14 N -0.477 5.477 15 C 0.128 3.872 16 C -0.179 4.179 17 C -0.051 4.051 18 C -0.084 4.084 19 C 0.070 3.930 20 C 0.177 3.823 21 H 0.066 0.934 22 N -0.712 5.712 23 C -0.249 4.249 24 H 0.073 0.927 25 C -0.007 4.007 26 N -0.928 5.928 27 Si 0.907 3.093 28 H -0.279 1.279 29 H -0.291 1.291 30 H -0.291 1.291 31 H 0.052 0.948 32 H 0.049 0.951 33 H 0.068 0.932 34 H 0.065 0.935 35 H 0.072 0.928 36 H 0.109 0.891 37 H 0.103 0.897 38 H 0.128 0.872 39 H 0.130 0.870 40 H 0.134 0.866 41 H 0.158 0.842 42 H 0.136 0.864 43 H 0.135 0.865 44 H 0.075 0.925 45 H 0.059 0.941 46 H 0.387 0.613 47 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.941 -9.935 14.746 19.088 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.133 4.133 3 H 0.102 0.898 4 C -0.009 4.009 5 N -0.347 5.347 6 C 0.316 3.684 7 O -0.422 6.422 8 C -0.144 4.144 9 C -0.037 4.037 10 C -0.124 4.124 11 C -0.114 4.114 12 C -0.118 4.118 13 C 0.006 3.994 14 N -0.184 5.184 15 C -0.045 4.045 16 C -0.198 4.198 17 C -0.077 4.077 18 C -0.086 4.086 19 C -0.056 4.056 20 C 0.065 3.935 21 H 0.084 0.916 22 N -0.352 5.352 23 C -0.380 4.380 24 H 0.091 0.909 25 C -0.204 4.204 26 N -0.575 5.575 27 Si 0.737 3.263 28 H -0.204 1.204 29 H -0.218 1.218 30 H -0.218 1.218 31 H 0.072 0.928 32 H 0.068 0.932 33 H 0.087 0.913 34 H 0.083 0.917 35 H 0.090 0.910 36 H 0.128 0.872 37 H 0.122 0.878 38 H 0.146 0.854 39 H 0.148 0.852 40 H 0.152 0.848 41 H 0.175 0.825 42 H 0.154 0.846 43 H 0.152 0.848 44 H 0.093 0.907 45 H 0.077 0.923 46 H 0.222 0.778 47 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 7.569 -10.058 15.919 20.295 hybrid contribution -0.520 0.089 -1.797 1.872 sum 7.048 -9.969 14.123 18.668 Atomic orbital electron populations 1.21612 0.93855 1.01556 1.02136 1.22662 0.96344 0.99758 0.94529 0.89776 1.22303 0.82674 0.98084 0.97795 1.48560 1.11912 1.66069 1.08131 1.20027 0.84538 0.77632 0.86233 1.90708 1.83106 1.53866 1.14510 1.20704 0.92284 1.04365 0.97071 1.19116 0.95682 0.92708 0.96145 1.20809 0.95540 0.98947 0.97152 1.20863 0.98257 0.96803 0.95476 1.20751 0.98620 0.92015 1.00388 1.18828 0.95294 0.92180 0.93143 1.68031 1.22883 1.00364 1.27164 1.22920 0.90406 0.97761 0.93397 1.21860 1.01027 0.98490 0.98460 1.21492 0.95956 0.92268 0.98021 1.18607 0.97651 0.94756 0.97596 1.23391 1.03592 1.01235 0.77363 1.21236 0.91482 0.93855 0.86910 0.91597 1.42375 1.86942 1.05306 1.00549 1.19271 1.43250 0.91932 0.83546 0.90925 1.24767 1.02275 0.95347 0.98020 1.69659 1.56382 1.02313 1.29175 0.86137 0.77314 0.78252 0.84548 1.20448 1.21765 1.21757 0.92847 0.93153 0.91296 0.91683 0.90994 0.87233 0.87848 0.85401 0.85159 0.84844 0.82517 0.84565 0.84763 0.90690 0.92275 0.77849 0.93340 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.79 9.31 37.16 0.35 -1.45 16 2 C -0.11 -1.69 3.26 -88.35 -0.29 -1.97 16 3 H 0.08 1.34 8.00 -51.93 -0.42 0.93 16 4 C 0.11 1.63 6.38 -2.41 -0.02 1.61 16 5 N -0.61 -9.13 3.32 -170.38 -0.57 -9.69 16 6 C 0.53 8.00 7.84 -10.99 -0.09 7.91 16 7 O -0.54 -9.98 16.29 5.56 0.09 -9.89 16 8 C -0.10 -1.27 4.44 -29.03 -0.13 -1.40 16 9 C -0.04 -0.45 4.38 -104.55 -0.46 -0.91 16 10 C -0.11 -1.24 9.58 -39.92 -0.38 -1.62 16 11 C -0.09 -0.99 9.94 -39.95 -0.40 -1.39 16 12 C -0.10 -1.16 9.98 -39.47 -0.39 -1.55 16 13 C 0.13 1.71 6.60 -84.86 -0.56 1.15 16 14 N -0.48 -6.21 10.34 -10.97 -0.11 -6.32 16 15 C 0.13 1.33 11.15 -17.46 -0.19 1.13 16 16 C -0.18 -1.77 10.03 -39.77 -0.40 -2.17 16 17 C -0.05 -0.60 9.37 -39.22 -0.37 -0.97 16 18 C -0.08 -1.13 5.74 -106.80 -0.61 -1.74 16 19 C 0.07 1.09 6.24 -3.06 -0.02 1.08 16 20 C 0.18 3.08 3.05 -66.09 -0.20 2.88 16 21 H 0.07 1.16 8.02 -51.93 -0.42 0.74 16 22 N -0.71 -15.87 5.18 -51.65 -0.27 -16.14 16 23 C -0.25 -6.27 9.98 -15.05 -0.15 -6.42 16 24 H 0.07 1.77 7.83 -52.49 -0.41 1.36 16 25 C -0.01 -0.19 5.50 -17.43 -0.10 -0.29 16 26 N -0.93 -26.26 13.06 55.49 0.72 -25.54 16 27 Si 0.91 20.99 29.55 -169.99 -5.02 15.97 16 28 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 29 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 30 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 31 H 0.05 0.66 8.07 -51.93 -0.42 0.24 16 32 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16 33 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 34 H 0.06 0.87 7.99 -51.93 -0.41 0.45 16 35 H 0.07 1.05 8.03 -51.93 -0.42 0.63 16 36 H 0.11 1.20 8.04 -51.93 -0.42 0.78 16 37 H 0.10 1.09 6.73 -51.93 -0.35 0.74 16 38 H 0.13 1.27 8.05 -52.48 -0.42 0.84 16 39 H 0.13 0.98 8.06 -52.49 -0.42 0.56 16 40 H 0.13 1.31 8.06 -52.48 -0.42 0.88 16 41 H 0.16 1.08 8.06 -52.49 -0.42 0.66 16 42 H 0.14 0.94 8.06 -52.49 -0.42 0.52 16 43 H 0.13 1.42 6.57 -52.49 -0.34 1.07 16 44 H 0.07 1.27 8.03 -51.93 -0.42 0.85 16 45 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 46 H 0.39 9.35 7.71 -40.82 -0.31 9.03 16 47 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 LS Contribution 389.88 15.07 5.88 5.88 Total: -1.00 -31.75 389.88 -10.54 -42.29 By element: Atomic # 1 Polarization: 16.41 SS G_CDS: -6.85 Total: 9.56 kcal Atomic # 6 Polarization: -1.71 SS G_CDS: -4.41 Total: -6.12 kcal Atomic # 7 Polarization: -57.47 SS G_CDS: -0.22 Total: -57.69 kcal Atomic # 8 Polarization: -9.98 SS G_CDS: 0.09 Total: -9.89 kcal Atomic # 14 Polarization: 20.99 SS G_CDS: -5.02 Total: 15.97 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -31.75 -10.54 -42.29 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054895726.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.818 kcal (2) G-P(sol) polarization free energy of solvation -31.753 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.065 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.541 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.294 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.524 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds