Wall clock time and date at job start Tue Mar 31 2020 22:47:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08999 * 110.89024 * 2 1 4 4 C 1.55134 * 110.93755 * 124.07896 * 2 1 3 5 5 N 1.47424 * 104.72370 * 155.28658 * 4 2 1 6 6 C 1.34776 * 125.64887 * 155.81246 * 5 4 2 7 7 O 1.21278 * 119.99655 * 359.72199 * 6 5 4 8 8 C 1.50697 * 119.99784 * 179.71744 * 6 5 4 9 9 C 1.50706 * 109.46931 * 180.02562 * 8 6 5 10 10 C 1.36179 * 120.19002 * 265.00080 * 9 8 6 11 11 C 1.39312 * 120.86683 * 179.97438 * 10 9 8 12 12 C 1.36110 * 121.06561 * 359.97438 * 11 10 9 13 13 C 1.40551 * 119.75024 * 0.02562 * 12 11 10 14 14 N 1.33692 * 121.07853 * 179.97438 * 13 12 11 15 15 C 1.31083 * 121.31809 * 180.02562 * 14 13 12 16 16 C 1.39337 * 121.75435 * 359.97438 * 15 14 13 17 17 C 1.36573 * 119.94039 * 0.02562 * 16 15 14 18 18 C 1.40378 * 120.19439 * 84.72200 * 9 8 6 19 19 C 1.47026 * 108.70245 * 335.55369 * 5 4 2 20 20 C 1.54326 * 107.27011 * 1.28462 * 19 5 4 21 21 H 1.09003 * 110.72374 * 263.65467 * 20 19 5 22 22 N 1.46500 * 110.71718 * 140.55717 * 20 19 5 23 23 C 1.36941 * 119.99819 * 86.45588 * 22 20 19 24 24 H 1.07997 * 119.99915 * 0.02562 * 23 22 20 25 25 C 1.38819 * 119.99449 * 179.97438 * 23 22 20 26 26 N 1.31609 * 120.00458 * 0.02562 * 25 23 22 27 27 Si 1.86801 * 119.99454 * 179.97438 * 25 23 22 28 28 H 1.48499 * 109.47254 * 0.02562 * 27 25 23 29 29 H 1.48501 * 109.47058 * 120.00144 * 27 25 23 30 30 H 1.48509 * 109.46908 * 240.00243 * 27 25 23 31 31 H 1.08997 * 109.47656 * 183.88004 * 1 2 3 32 32 H 1.09002 * 109.46805 * 303.88141 * 1 2 3 33 33 H 1.08996 * 109.47139 * 63.87759 * 1 2 3 34 34 H 1.09004 * 110.49435 * 36.44540 * 4 2 1 35 35 H 1.09000 * 110.33865 * 274.05242 * 4 2 1 36 36 H 1.08998 * 109.47496 * 60.00525 * 8 6 5 37 37 H 1.09005 * 109.47284 * 300.00061 * 8 6 5 38 38 H 1.08004 * 119.56584 * 359.97438 * 10 9 8 39 39 H 1.08001 * 119.46686 * 179.97438 * 11 10 9 40 40 H 1.08003 * 120.11924 * 179.97438 * 12 11 10 41 41 H 1.08000 * 119.11875 * 179.97438 * 15 14 13 42 42 H 1.08000 * 120.02602 * 180.02562 * 16 15 14 43 43 H 1.08000 * 120.92802 * 179.97438 * 17 16 15 44 44 H 1.09000 * 109.88270 * 120.69994 * 19 5 4 45 45 H 1.08997 * 109.88129 * 241.71801 * 19 5 4 46 46 H 0.97007 * 120.00027 * 266.44635 * 22 20 19 47 47 H 0.96995 * 120.00383 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9187 1.0183 0.0000 4 6 2.0844 -0.8119 1.2001 5 7 3.4280 -1.2423 0.7725 6 6 4.4489 -1.5604 1.5928 7 8 4.3024 -1.4991 2.7952 8 6 5.7724 -1.9924 1.0160 9 6 6.7358 -2.2891 2.1363 10 6 7.6047 -1.3317 2.5639 11 6 8.5009 -1.5905 3.5986 12 6 8.5340 -2.8052 4.2117 13 6 7.6528 -3.8192 3.7986 14 7 7.6628 -5.0222 4.3819 15 6 6.8434 -5.9714 4.0000 16 6 5.9236 -5.7764 2.9717 17 6 5.8606 -4.5708 2.3331 18 6 6.7388 -3.5521 2.7490 19 6 3.4678 -1.2732 -0.6969 20 6 2.0861 -0.8075 -1.2025 21 1 1.4481 -1.6631 -1.4241 22 7 2.2278 0.0502 -2.3817 23 6 2.3024 -0.5085 -3.6297 24 1 2.2562 -1.5813 -3.7447 25 6 2.4361 0.3043 -4.7471 26 7 2.4918 1.6118 -4.6070 27 14 2.5385 -0.4578 -6.4495 28 1 2.4536 -1.9360 -6.3360 29 1 1.4146 0.0396 -7.2829 30 1 3.8283 -0.0828 -7.0829 31 1 -0.3634 -1.0252 0.0695 32 1 -0.3633 0.5729 0.8532 33 1 -0.3633 0.4525 -0.9227 34 1 1.4536 -1.6785 1.3985 35 1 2.1523 -0.1802 2.0858 36 1 6.1748 -1.1943 0.3922 37 1 5.6304 -2.8889 0.4124 38 1 7.5990 -0.3589 2.0946 39 1 9.1803 -0.8147 3.9194 40 1 9.2353 -2.9894 5.0121 41 1 6.8823 -6.9301 4.4957 42 1 5.2613 -6.5780 2.6799 43 1 5.1541 -4.4024 1.5337 44 1 4.2425 -0.5983 -1.0609 45 1 3.6684 -2.2877 -1.0410 46 1 2.2687 1.0139 -2.2784 47 1 2.5857 2.1797 -5.3877 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001054895726.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:47:35 Heat of formation + Delta-G solvation = 13.459817 kcal Electronic energy + Delta-G solvation = -28740.311952 eV Core-core repulsion = 24887.127842 eV Total energy + Delta-G solvation = -3853.184110 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -42.01290 -41.00685 -39.08633 -38.02167 -35.83513 -35.12243 -33.96090 -32.57627 -32.18070 -31.49262 -29.26636 -29.00137 -26.89133 -25.83394 -25.17723 -24.56565 -23.18305 -22.09041 -21.36616 -20.16006 -19.08931 -19.04614 -18.14138 -18.12871 -17.93017 -17.25224 -16.62667 -16.33059 -15.72789 -15.55105 -15.35800 -15.30664 -15.14344 -14.72308 -14.61923 -14.51536 -14.18423 -14.07083 -13.88996 -13.72950 -13.44338 -13.00091 -12.99728 -12.85482 -12.84374 -12.64641 -12.56084 -12.19547 -12.17780 -12.09096 -12.00989 -11.66653 -11.51804 -11.39060 -11.04974 -10.88083 -10.50384 -9.72888 -9.65440 -9.17773 -9.03632 -7.92294 -5.21724 -0.59814 -0.13129 0.96571 1.51141 1.52865 1.55487 1.61317 1.87337 2.10703 2.58727 3.10032 3.36134 3.39772 3.42417 3.46183 3.76334 3.80877 3.84493 3.86361 3.88947 3.92728 4.09599 4.19394 4.23929 4.28811 4.38338 4.45681 4.47766 4.51003 4.58526 4.62992 4.68828 4.85416 4.90262 4.91457 4.99783 5.06558 5.11728 5.12458 5.15750 5.24780 5.33505 5.38691 5.47703 5.49764 5.58651 5.59199 5.90470 6.28444 6.49751 6.91663 7.09344 7.36557 8.08337 8.31757 9.30804 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.013908 B = 0.002609 C = 0.002494 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2012.812019 B =10727.914015 C =11224.379620 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.104 4.104 3 H 0.070 0.930 4 C 0.117 3.883 5 N -0.612 5.612 6 C 0.529 3.471 7 O -0.577 6.577 8 C -0.098 4.098 9 C -0.053 4.053 10 C -0.116 4.116 11 C -0.093 4.093 12 C -0.112 4.112 13 C 0.099 3.901 14 N -0.502 5.502 15 C 0.124 3.876 16 C -0.172 4.172 17 C -0.071 4.071 18 C -0.105 4.105 19 C 0.083 3.917 20 C 0.171 3.829 21 H 0.070 0.930 22 N -0.722 5.722 23 C -0.236 4.236 24 H 0.082 0.918 25 C -0.070 4.070 26 N -0.967 5.967 27 Si 0.966 3.034 28 H -0.263 1.263 29 H -0.299 1.299 30 H -0.297 1.297 31 H 0.067 0.933 32 H 0.069 0.931 33 H 0.047 0.953 34 H 0.081 0.919 35 H 0.069 0.931 36 H 0.121 0.879 37 H 0.120 0.880 38 H 0.141 0.859 39 H 0.160 0.840 40 H 0.146 0.854 41 H 0.191 0.809 42 H 0.169 0.831 43 H 0.142 0.858 44 H 0.062 0.938 45 H 0.076 0.924 46 H 0.375 0.625 47 H 0.250 0.750 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.914 -11.891 15.311 20.582 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.124 4.124 3 H 0.089 0.911 4 C -0.005 4.005 5 N -0.345 5.345 6 C 0.319 3.681 7 O -0.457 6.457 8 C -0.137 4.137 9 C -0.055 4.055 10 C -0.134 4.134 11 C -0.113 4.113 12 C -0.130 4.130 13 C -0.021 4.021 14 N -0.210 5.210 15 C -0.049 4.049 16 C -0.192 4.192 17 C -0.096 4.096 18 C -0.107 4.107 19 C -0.042 4.042 20 C 0.061 3.939 21 H 0.088 0.912 22 N -0.361 5.361 23 C -0.367 4.367 24 H 0.100 0.900 25 C -0.263 4.263 26 N -0.618 5.618 27 Si 0.796 3.204 28 H -0.187 1.187 29 H -0.227 1.227 30 H -0.225 1.225 31 H 0.086 0.914 32 H 0.088 0.912 33 H 0.066 0.934 34 H 0.099 0.901 35 H 0.088 0.912 36 H 0.139 0.861 37 H 0.138 0.862 38 H 0.159 0.841 39 H 0.177 0.823 40 H 0.164 0.836 41 H 0.208 0.792 42 H 0.187 0.813 43 H 0.160 0.840 44 H 0.080 0.920 45 H 0.094 0.906 46 H 0.207 0.793 47 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 7.538 -12.062 16.510 21.792 hybrid contribution -0.540 0.620 -1.844 2.019 sum 6.998 -11.442 14.666 19.874 Atomic orbital electron populations 1.21570 0.92506 1.02650 1.01896 1.22562 0.97411 0.98745 0.93644 0.91147 1.22320 0.82632 0.98483 0.97110 1.48574 1.12283 1.65937 1.07720 1.20471 0.85179 0.76736 0.85720 1.90693 1.83701 1.55351 1.15957 1.20701 0.90537 1.05334 0.97133 1.19265 0.96378 0.93078 0.96752 1.21127 0.95501 0.99350 0.97422 1.21183 0.98206 0.97152 0.94732 1.21026 0.98793 0.92239 1.00948 1.19181 0.96142 0.92976 0.93813 1.68067 1.24172 1.00794 1.27983 1.23571 0.89535 0.98454 0.93295 1.22243 1.00785 0.98658 0.97468 1.21724 0.96254 0.92819 0.98843 1.18848 0.98326 0.95506 0.98041 1.23054 1.01696 1.01748 0.77728 1.21424 0.92635 0.93666 0.86185 0.91162 1.42497 1.87102 1.05216 1.01304 1.19650 1.40256 0.92303 0.84537 0.89969 1.25475 1.03734 0.95753 1.01321 1.69803 1.59011 1.03552 1.29425 0.85188 0.76332 0.78300 0.80614 1.18699 1.22668 1.22493 0.91396 0.91207 0.93396 0.90113 0.91217 0.86122 0.86216 0.84072 0.82264 0.83640 0.79198 0.81323 0.83985 0.91996 0.90569 0.79278 0.94152 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.24 9.31 71.98 0.67 -2.57 16 2 C -0.10 -2.98 3.26 -9.32 -0.03 -3.01 16 3 H 0.07 2.23 8.00 -2.39 -0.02 2.21 16 4 C 0.12 3.13 6.38 86.93 0.55 3.69 16 5 N -0.61 -17.26 3.32 -811.34 -2.70 -19.95 16 6 C 0.53 15.41 7.84 87.66 0.69 16.09 16 7 O -0.58 -20.77 16.29 -3.02 -0.05 -20.82 16 8 C -0.10 -2.26 4.44 29.10 0.13 -2.13 16 9 C -0.05 -1.34 4.38 -19.82 -0.09 -1.43 16 10 C -0.12 -2.61 9.58 22.05 0.21 -2.40 16 11 C -0.09 -1.87 9.94 22.03 0.22 -1.65 16 12 C -0.11 -2.56 9.98 22.34 0.22 -2.33 16 13 C 0.10 2.66 6.60 40.28 0.27 2.93 16 14 N -0.50 -12.72 10.34 -188.63 -1.95 -14.67 16 15 C 0.12 2.36 11.15 85.07 0.95 3.31 16 16 C -0.17 -3.06 10.03 22.14 0.22 -2.84 16 17 C -0.07 -1.57 9.37 22.50 0.21 -1.36 16 18 C -0.11 -2.77 5.74 -21.28 -0.12 -2.89 16 19 C 0.08 2.47 6.24 86.73 0.54 3.01 16 20 C 0.17 5.72 3.05 46.18 0.14 5.86 16 21 H 0.07 2.32 8.02 -2.39 -0.02 2.30 16 22 N -0.72 -32.01 5.18 -317.31 -1.64 -33.65 16 23 C -0.24 -11.68 9.98 84.03 0.84 -10.84 16 24 H 0.08 3.85 7.83 -2.91 -0.02 3.83 16 25 C -0.07 -3.73 5.50 84.87 0.47 -3.27 16 26 N -0.97 -55.73 13.06 21.65 0.28 -55.45 16 27 Si 0.97 43.12 29.55 68.60 2.03 45.15 16 28 H -0.26 -10.86 7.11 99.48 0.71 -10.15 16 29 H -0.30 -13.63 7.11 99.48 0.71 -12.93 16 30 H -0.30 -13.48 7.11 99.48 0.71 -12.78 16 31 H 0.07 1.51 8.07 -2.39 -0.02 1.49 16 32 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16 33 H 0.05 1.42 8.14 -2.39 -0.02 1.40 16 34 H 0.08 1.94 7.99 -2.39 -0.02 1.92 16 35 H 0.07 1.93 8.03 -2.39 -0.02 1.91 16 36 H 0.12 2.49 8.04 -2.39 -0.02 2.47 16 37 H 0.12 2.32 6.73 -2.38 -0.02 2.31 16 38 H 0.14 2.65 8.05 -2.91 -0.02 2.62 16 39 H 0.16 2.10 8.06 -2.91 -0.02 2.08 16 40 H 0.15 2.79 8.06 -2.91 -0.02 2.77 16 41 H 0.19 2.09 8.06 -2.91 -0.02 2.07 16 42 H 0.17 1.77 8.06 -2.91 -0.02 1.75 16 43 H 0.14 2.78 6.57 -2.91 -0.02 2.76 16 44 H 0.06 2.03 8.03 -2.39 -0.02 2.01 16 45 H 0.08 2.01 8.14 -2.39 -0.02 2.00 16 46 H 0.37 18.38 7.71 -92.70 -0.72 17.67 16 47 H 0.25 14.10 8.31 -92.71 -0.77 13.33 16 Total: -1.00 -69.06 389.88 2.33 -66.73 By element: Atomic # 1 Polarization: 34.23 SS G_CDS: 0.27 Total: 34.50 kcal Atomic # 6 Polarization: -7.92 SS G_CDS: 6.09 Total: -1.83 kcal Atomic # 7 Polarization: -117.72 SS G_CDS: -6.01 Total: -123.73 kcal Atomic # 8 Polarization: -20.77 SS G_CDS: -0.05 Total: -20.82 kcal Atomic # 14 Polarization: 43.12 SS G_CDS: 2.03 Total: 45.15 kcal Total: -69.06 2.33 -66.73 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054895726.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.194 kcal (2) G-P(sol) polarization free energy of solvation -69.061 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.133 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.327 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.734 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.460 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds