Wall clock time and date at job start Tue Mar 31 2020 22:47:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09011 * 110.91631 * 2 1 4 4 C 1.54900 * 111.00779 * 236.09668 * 2 1 3 5 5 N 1.47428 * 104.83449 * 204.91826 * 4 2 1 6 6 C 1.34778 * 125.64881 * 204.16728 * 5 4 2 7 7 O 1.21290 * 120.00098 * 359.97438 * 6 5 4 8 8 C 1.50702 * 120.00002 * 179.97438 * 6 5 4 9 9 C 1.50700 * 109.47048 * 179.97438 * 8 6 5 10 10 C 1.39374 * 119.49068 * 90.00000 * 9 8 6 11 11 C 1.36175 * 121.08966 * 179.97438 * 10 9 8 12 12 C 1.40366 * 119.51136 * 0.02562 * 11 10 9 13 13 C 1.40433 * 122.07613 * 180.02562 * 12 11 10 14 14 N 1.31244 * 119.88607 * 179.97438 * 13 12 11 15 15 C 1.32606 * 122.77262 * 359.97438 * 14 13 12 16 16 C 1.36173 * 121.87919 * 0.02562 * 15 14 13 17 17 C 1.40691 * 118.67046 * 359.97438 * 16 15 14 18 18 C 1.36216 * 119.49297 * 269.72373 * 9 8 6 19 19 C 1.47017 * 108.70522 * 24.12515 * 5 4 2 20 20 C 1.54332 * 107.27026 * 358.94225 * 19 5 4 21 21 H 1.09001 * 110.71417 * 96.34429 * 20 19 5 22 22 N 1.46499 * 110.72184 * 219.44253 * 20 19 5 23 23 C 1.36935 * 119.99938 * 273.54809 * 22 20 19 24 24 H 1.07999 * 120.00083 * 0.02562 * 23 22 20 25 25 C 1.38812 * 119.99632 * 179.97438 * 23 22 20 26 26 N 1.31624 * 119.99535 * 179.97438 * 25 23 22 27 27 Si 1.86796 * 120.00187 * 0.27829 * 25 23 22 28 28 H 1.48501 * 109.46922 * 269.71949 * 27 25 23 29 29 H 1.48496 * 109.47354 * 29.72145 * 27 25 23 30 30 H 1.48501 * 109.47428 * 149.72253 * 27 25 23 31 31 H 1.08998 * 109.47394 * 296.10152 * 1 2 3 32 32 H 1.08996 * 109.46838 * 56.10000 * 1 2 3 33 33 H 1.09000 * 109.46980 * 176.09928 * 1 2 3 34 34 H 1.09005 * 110.37160 * 86.07690 * 4 2 1 35 35 H 1.09004 * 110.45997 * 323.79921 * 4 2 1 36 36 H 1.08996 * 109.46778 * 299.99650 * 8 6 5 37 37 H 1.09001 * 109.47033 * 59.99784 * 8 6 5 38 38 H 1.08005 * 119.45559 * 359.95159 * 10 9 8 39 39 H 1.07999 * 120.24244 * 180.02562 * 11 10 9 40 40 H 1.08006 * 120.05911 * 359.94748 * 13 12 11 41 41 H 1.07994 * 119.06066 * 180.02562 * 15 14 13 42 42 H 1.08000 * 120.67113 * 179.97438 * 16 15 14 43 43 H 1.08006 * 120.25737 * 0.03018 * 18 9 8 44 44 H 1.09002 * 109.88548 * 239.53190 * 19 5 4 45 45 H 1.08995 * 110.01292 * 118.42889 * 19 5 4 46 46 H 0.97004 * 119.99469 * 93.54877 * 22 20 19 47 47 H 0.97005 * 119.99717 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9191 1.0183 0.0000 4 6 2.0853 -0.8066 -1.2002 5 7 3.4272 -1.2430 -0.7732 6 6 4.4482 -1.5602 -1.5938 7 8 4.3016 -1.4980 -2.7962 8 6 5.7719 -1.9922 -1.0174 9 6 6.7352 -2.2877 -2.1380 10 6 7.5446 -1.2672 -2.6341 11 6 8.4267 -1.4981 -3.6455 12 6 8.5230 -2.7846 -4.1987 13 6 9.4141 -3.0827 -5.2424 14 7 9.4691 -4.3010 -5.7274 15 6 8.7103 -5.2892 -5.2734 16 6 7.8149 -5.1033 -4.2644 17 6 7.6984 -3.8230 -3.6928 18 6 6.8056 -3.5494 -2.6466 19 6 3.4675 -1.2741 0.6961 20 6 2.0861 -0.8078 1.2024 21 1 1.4479 -1.6632 1.4240 22 7 2.2286 0.0497 2.3816 23 6 2.3033 -0.5091 3.6295 24 1 2.2576 -1.5820 3.7443 25 6 2.4388 0.3034 4.7468 26 7 2.5101 -0.2337 5.9463 27 14 2.5114 2.1594 4.5486 28 1 3.9245 2.5846 4.3829 29 1 1.7301 2.5604 3.3512 30 1 1.9373 2.8089 5.7544 31 1 -0.3634 0.4521 0.9228 32 1 -0.3633 0.5732 -0.8530 33 1 -0.3633 -1.0253 -0.0699 34 1 2.1560 -0.1720 -2.0837 35 1 1.4525 -1.6704 -1.4042 36 1 6.1740 -1.1943 -0.3931 37 1 5.6303 -2.8891 -0.4144 38 1 7.4707 -0.2769 -2.2096 39 1 9.0476 -0.6974 -4.0191 40 1 10.0528 -2.3107 -5.6456 41 1 8.8052 -6.2695 -5.7164 42 1 7.2063 -5.9221 -3.9101 43 1 6.1755 -4.3319 -2.2502 44 1 4.2426 -0.5996 1.0601 45 1 3.6662 -2.2882 1.0425 46 1 2.2699 1.0133 2.2783 47 1 2.6044 0.3341 6.7271 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001054896847.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:47:15 Heat of formation + Delta-G solvation = 31.968268 kcal Electronic energy + Delta-G solvation = -28191.549230 eV Core-core repulsion = 24339.167706 eV Total energy + Delta-G solvation = -3852.381523 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.07744 -40.00277 -38.20934 -37.24837 -34.27243 -33.35112 -32.96370 -32.40221 -31.12958 -30.00998 -28.57203 -27.95938 -26.06579 -24.18897 -23.90593 -23.02072 -22.41810 -21.39465 -20.27577 -19.21013 -18.00234 -17.65475 -17.29335 -16.95816 -16.83619 -16.10495 -15.40053 -15.15067 -14.95051 -14.47519 -14.41168 -14.30577 -14.08269 -13.69857 -13.46194 -13.41578 -13.28301 -12.89362 -12.73021 -12.65239 -12.43622 -12.09739 -11.96991 -11.95442 -11.76490 -11.52930 -11.26292 -11.19391 -10.88220 -10.73037 -10.43166 -10.41777 -10.12581 -9.88981 -9.73103 -9.72003 -9.13927 -9.07109 -8.48417 -8.27567 -7.48520 -5.92066 -3.30500 0.14969 0.67632 1.72140 2.67989 2.73799 3.17677 3.26662 3.29349 3.36182 3.87451 4.15827 4.28265 4.37071 4.45018 4.54283 4.58819 4.63196 4.78846 4.90126 4.94536 4.96162 5.00284 5.07848 5.18508 5.35385 5.36224 5.38335 5.43532 5.48337 5.58223 5.60673 5.63257 5.69418 5.78800 5.83411 5.84901 6.00288 6.04530 6.12483 6.20302 6.27084 6.30230 6.37832 6.40664 6.41892 6.61669 6.66770 7.63259 7.73408 7.81702 8.21922 8.26509 9.02741 9.75052 9.92989 11.25414 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.017738 B = 0.002264 C = 0.002159 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1578.182323 B =12363.061178 C =12963.126262 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.117 4.117 3 H 0.081 0.919 4 C 0.115 3.885 5 N -0.614 5.614 6 C 0.529 3.471 7 O -0.546 6.546 8 C -0.106 4.106 9 C -0.034 4.034 10 C -0.100 4.100 11 C -0.089 4.089 12 C -0.113 4.113 13 C 0.145 3.855 14 N -0.493 5.493 15 C 0.070 3.930 16 C -0.152 4.152 17 C -0.020 4.020 18 C -0.101 4.101 19 C 0.071 3.929 20 C 0.182 3.818 21 H 0.075 0.925 22 N -0.736 5.736 23 C -0.254 4.254 24 H 0.092 0.908 25 C 0.011 3.989 26 N -0.928 5.928 27 Si 0.883 3.117 28 H -0.283 1.283 29 H -0.276 1.276 30 H -0.290 1.290 31 H 0.067 0.933 32 H 0.051 0.949 33 H 0.056 0.944 34 H 0.072 0.928 35 H 0.067 0.933 36 H 0.108 0.892 37 H 0.107 0.893 38 H 0.127 0.873 39 H 0.134 0.866 40 H 0.162 0.838 41 H 0.151 0.849 42 H 0.137 0.863 43 H 0.130 0.870 44 H 0.074 0.926 45 H 0.065 0.935 46 H 0.364 0.636 47 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.548 -4.715 -18.920 21.290 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.137 4.137 3 H 0.100 0.900 4 C -0.008 4.008 5 N -0.348 5.348 6 C 0.318 3.682 7 O -0.424 6.424 8 C -0.145 4.145 9 C -0.035 4.035 10 C -0.118 4.118 11 C -0.109 4.109 12 C -0.115 4.115 13 C -0.027 4.027 14 N -0.201 5.201 15 C -0.073 4.073 16 C -0.172 4.172 17 C -0.026 4.026 18 C -0.119 4.119 19 C -0.054 4.054 20 C 0.071 3.929 21 H 0.093 0.907 22 N -0.378 5.378 23 C -0.383 4.383 24 H 0.110 0.890 25 C -0.186 4.186 26 N -0.574 5.574 27 Si 0.713 3.287 28 H -0.210 1.210 29 H -0.202 1.202 30 H -0.216 1.216 31 H 0.086 0.914 32 H 0.070 0.930 33 H 0.075 0.925 34 H 0.091 0.909 35 H 0.085 0.915 36 H 0.126 0.874 37 H 0.125 0.875 38 H 0.145 0.855 39 H 0.152 0.848 40 H 0.179 0.821 41 H 0.168 0.832 42 H 0.155 0.845 43 H 0.148 0.852 44 H 0.092 0.908 45 H 0.084 0.916 46 H 0.198 0.802 47 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 9.056 -5.206 -20.034 22.594 hybrid contribution -0.533 1.510 0.918 1.846 sum 8.523 -3.696 -19.116 21.254 Atomic orbital electron populations 1.21626 0.93647 1.01933 1.02085 1.22658 0.96561 0.99621 0.94822 0.90049 1.22244 0.82824 0.98160 0.97572 1.48547 1.12026 1.66124 1.08092 1.20048 0.84572 0.77434 0.86179 1.90711 1.83183 1.53938 1.14523 1.20760 0.92021 1.04661 0.97102 1.19190 0.95046 0.93412 0.95896 1.20819 0.95267 0.98974 0.96721 1.20912 0.98601 0.95303 0.96039 1.19030 0.98847 0.94773 0.98882 1.23182 0.94461 0.93761 0.91256 1.67407 1.23385 1.00780 1.28570 1.22133 0.92608 0.97975 0.94546 1.21915 1.00370 0.96686 0.98229 1.18124 0.95482 0.93381 0.95564 1.20782 0.98126 0.97000 0.95996 1.23282 1.02985 1.01773 0.77393 1.21213 0.91884 0.93828 0.86014 0.90709 1.42712 1.88693 1.04048 1.02307 1.19047 1.43643 0.93974 0.81681 0.88983 1.24684 1.01411 0.97402 0.95119 1.69698 1.56034 1.34360 0.97342 0.86590 0.77912 0.87134 0.77099 1.20998 1.20221 1.21607 0.91428 0.93027 0.92478 0.90912 0.91466 0.87420 0.87530 0.85508 0.84831 0.82101 0.83156 0.84524 0.85192 0.90755 0.91650 0.80236 0.92856 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.68 9.31 37.16 0.35 -1.33 16 2 C -0.12 -1.61 3.25 -88.48 -0.29 -1.90 16 3 H 0.08 1.16 8.00 -51.92 -0.42 0.75 16 4 C 0.11 1.53 6.37 -2.53 -0.02 1.52 16 5 N -0.61 -8.65 3.33 -170.52 -0.57 -9.22 16 6 C 0.53 7.57 7.84 -10.98 -0.09 7.49 16 7 O -0.55 -9.50 16.29 5.55 0.09 -9.41 16 8 C -0.11 -1.18 4.99 -29.03 -0.14 -1.33 16 9 C -0.03 -0.39 4.34 -104.93 -0.46 -0.84 16 10 C -0.10 -1.06 9.58 -39.90 -0.38 -1.44 16 11 C -0.09 -0.86 9.81 -39.52 -0.39 -1.25 16 12 C -0.11 -1.23 5.74 -106.86 -0.61 -1.84 16 13 C 0.14 1.44 11.05 -16.98 -0.19 1.25 16 14 N -0.49 -5.52 10.30 -13.15 -0.14 -5.66 16 15 C 0.07 0.69 11.07 -17.96 -0.20 0.49 16 16 C -0.15 -1.50 9.88 -39.40 -0.39 -1.89 16 17 C -0.02 -0.23 5.75 -106.81 -0.61 -0.85 16 18 C -0.10 -1.14 9.41 -39.56 -0.37 -1.51 16 19 C 0.07 1.06 6.24 -3.06 -0.02 1.04 16 20 C 0.18 3.01 3.06 -66.09 -0.20 2.81 16 21 H 0.08 1.28 8.02 -51.93 -0.42 0.86 16 22 N -0.74 -15.32 4.98 -51.65 -0.26 -15.58 16 23 C -0.25 -6.47 10.46 -15.06 -0.16 -6.63 16 24 H 0.09 2.52 8.06 -52.49 -0.42 2.10 16 25 C 0.01 0.29 5.50 -17.43 -0.10 0.19 16 26 N -0.93 -27.44 13.97 55.49 0.78 -26.67 16 27 Si 0.88 20.61 27.74 -169.99 -4.71 15.89 16 28 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 29 H -0.28 -6.03 6.52 56.52 0.37 -5.66 16 30 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 31 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 32 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 33 H 0.06 0.66 8.08 -51.93 -0.42 0.24 16 34 H 0.07 0.98 8.04 -51.93 -0.42 0.57 16 35 H 0.07 0.85 7.99 -51.93 -0.41 0.43 16 36 H 0.11 1.07 8.08 -51.93 -0.42 0.65 16 37 H 0.11 1.03 8.07 -51.93 -0.42 0.61 16 38 H 0.13 1.16 8.06 -52.48 -0.42 0.73 16 39 H 0.13 0.89 8.06 -52.49 -0.42 0.47 16 40 H 0.16 1.08 8.06 -52.48 -0.42 0.66 16 41 H 0.15 1.08 8.06 -52.49 -0.42 0.65 16 42 H 0.14 1.01 8.06 -52.49 -0.42 0.59 16 43 H 0.13 1.26 8.06 -52.48 -0.42 0.84 16 44 H 0.07 1.16 8.03 -51.93 -0.42 0.75 16 45 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 46 H 0.36 7.57 5.57 -40.82 -0.23 7.34 16 47 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 LS Contribution 390.00 15.07 5.88 5.88 Total: -1.00 -32.60 390.00 -10.16 -42.76 By element: Atomic # 1 Polarization: 14.98 SS G_CDS: -6.96 Total: 8.02 kcal Atomic # 6 Polarization: -1.75 SS G_CDS: -4.26 Total: -6.02 kcal Atomic # 7 Polarization: -56.94 SS G_CDS: -0.18 Total: -57.12 kcal Atomic # 8 Polarization: -9.50 SS G_CDS: 0.09 Total: -9.41 kcal Atomic # 14 Polarization: 20.61 SS G_CDS: -4.71 Total: 15.89 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -32.60 -10.16 -42.76 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054896847.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.726 kcal (2) G-P(sol) polarization free energy of solvation -32.598 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.127 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.159 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.758 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.968 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds