Wall clock time and date at job start Tue Mar 31 2020 22:47:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09011 * 110.91631 * 2 1 4 4 C 1.54900 * 111.00779 * 236.09668 * 2 1 3 5 5 N 1.47428 * 104.83449 * 204.91826 * 4 2 1 6 6 C 1.34778 * 125.64881 * 204.16728 * 5 4 2 7 7 O 1.21290 * 120.00098 * 359.97438 * 6 5 4 8 8 C 1.50702 * 120.00002 * 179.97438 * 6 5 4 9 9 C 1.50700 * 109.47048 * 179.97438 * 8 6 5 10 10 C 1.39374 * 119.49068 * 90.00000 * 9 8 6 11 11 C 1.36175 * 121.08966 * 179.97438 * 10 9 8 12 12 C 1.40366 * 119.51136 * 0.02562 * 11 10 9 13 13 C 1.40433 * 122.07613 * 180.02562 * 12 11 10 14 14 N 1.31244 * 119.88607 * 179.97438 * 13 12 11 15 15 C 1.32606 * 122.77262 * 359.97438 * 14 13 12 16 16 C 1.36173 * 121.87919 * 0.02562 * 15 14 13 17 17 C 1.40691 * 118.67046 * 359.97438 * 16 15 14 18 18 C 1.36216 * 119.49297 * 269.72373 * 9 8 6 19 19 C 1.47017 * 108.70522 * 24.12515 * 5 4 2 20 20 C 1.54332 * 107.27026 * 358.94225 * 19 5 4 21 21 H 1.09001 * 110.71417 * 96.34429 * 20 19 5 22 22 N 1.46499 * 110.72184 * 219.44253 * 20 19 5 23 23 C 1.36935 * 119.99938 * 273.54809 * 22 20 19 24 24 H 1.07999 * 120.00083 * 0.02562 * 23 22 20 25 25 C 1.38812 * 119.99632 * 179.97438 * 23 22 20 26 26 N 1.31624 * 119.99535 * 179.97438 * 25 23 22 27 27 Si 1.86796 * 120.00187 * 0.27829 * 25 23 22 28 28 H 1.48501 * 109.46922 * 269.71949 * 27 25 23 29 29 H 1.48496 * 109.47354 * 29.72145 * 27 25 23 30 30 H 1.48501 * 109.47428 * 149.72253 * 27 25 23 31 31 H 1.08998 * 109.47394 * 296.10152 * 1 2 3 32 32 H 1.08996 * 109.46838 * 56.10000 * 1 2 3 33 33 H 1.09000 * 109.46980 * 176.09928 * 1 2 3 34 34 H 1.09005 * 110.37160 * 86.07690 * 4 2 1 35 35 H 1.09004 * 110.45997 * 323.79921 * 4 2 1 36 36 H 1.08996 * 109.46778 * 299.99650 * 8 6 5 37 37 H 1.09001 * 109.47033 * 59.99784 * 8 6 5 38 38 H 1.08005 * 119.45559 * 359.95159 * 10 9 8 39 39 H 1.07999 * 120.24244 * 180.02562 * 11 10 9 40 40 H 1.08006 * 120.05911 * 359.94748 * 13 12 11 41 41 H 1.07994 * 119.06066 * 180.02562 * 15 14 13 42 42 H 1.08000 * 120.67113 * 179.97438 * 16 15 14 43 43 H 1.08006 * 120.25737 * 0.03018 * 18 9 8 44 44 H 1.09002 * 109.88548 * 239.53190 * 19 5 4 45 45 H 1.08995 * 110.01292 * 118.42889 * 19 5 4 46 46 H 0.97004 * 119.99469 * 93.54877 * 22 20 19 47 47 H 0.97005 * 119.99717 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9191 1.0183 0.0000 4 6 2.0853 -0.8066 -1.2002 5 7 3.4272 -1.2430 -0.7732 6 6 4.4482 -1.5602 -1.5938 7 8 4.3016 -1.4980 -2.7962 8 6 5.7719 -1.9922 -1.0174 9 6 6.7352 -2.2877 -2.1380 10 6 7.5446 -1.2672 -2.6341 11 6 8.4267 -1.4981 -3.6455 12 6 8.5230 -2.7846 -4.1987 13 6 9.4141 -3.0827 -5.2424 14 7 9.4691 -4.3010 -5.7274 15 6 8.7103 -5.2892 -5.2734 16 6 7.8149 -5.1033 -4.2644 17 6 7.6984 -3.8230 -3.6928 18 6 6.8056 -3.5494 -2.6466 19 6 3.4675 -1.2741 0.6961 20 6 2.0861 -0.8078 1.2024 21 1 1.4479 -1.6632 1.4240 22 7 2.2286 0.0497 2.3816 23 6 2.3033 -0.5091 3.6295 24 1 2.2576 -1.5820 3.7443 25 6 2.4388 0.3034 4.7468 26 7 2.5101 -0.2337 5.9463 27 14 2.5114 2.1594 4.5486 28 1 3.9245 2.5846 4.3829 29 1 1.7301 2.5604 3.3512 30 1 1.9373 2.8089 5.7544 31 1 -0.3634 0.4521 0.9228 32 1 -0.3633 0.5732 -0.8530 33 1 -0.3633 -1.0253 -0.0699 34 1 2.1560 -0.1720 -2.0837 35 1 1.4525 -1.6704 -1.4042 36 1 6.1740 -1.1943 -0.3931 37 1 5.6303 -2.8891 -0.4144 38 1 7.4707 -0.2769 -2.2096 39 1 9.0476 -0.6974 -4.0191 40 1 10.0528 -2.3107 -5.6456 41 1 8.8052 -6.2695 -5.7164 42 1 7.2063 -5.9221 -3.9101 43 1 6.1755 -4.3319 -2.2502 44 1 4.2426 -0.5996 1.0601 45 1 3.6662 -2.2882 1.0425 46 1 2.2699 1.0133 2.2783 47 1 2.6044 0.3341 6.7271 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001054896847.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:47:14 Heat of formation + Delta-G solvation = 13.080216 kcal Electronic energy + Delta-G solvation = -28192.368277 eV Core-core repulsion = 24339.167706 eV Total energy + Delta-G solvation = -3853.200571 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.86186 -41.11713 -39.28485 -38.21771 -35.93622 -34.24208 -33.96438 -33.48507 -32.81804 -30.75473 -29.53771 -29.33246 -27.06508 -25.62397 -24.90198 -23.91108 -23.20964 -22.72169 -21.60551 -20.30996 -19.49769 -18.75661 -18.12395 -18.06482 -17.71768 -17.20647 -16.53854 -16.41328 -15.93996 -15.84841 -15.27486 -15.20924 -14.97255 -14.85856 -14.77936 -14.56296 -14.39862 -14.25838 -13.82746 -13.61531 -13.57411 -13.21150 -12.96379 -12.95110 -12.90843 -12.86184 -12.72757 -12.20269 -12.14531 -11.99047 -11.90762 -11.78598 -11.44492 -11.18290 -11.08183 -10.92177 -10.48917 -9.91720 -9.66706 -9.34910 -9.02529 -7.99598 -5.34564 -0.59529 -0.11804 0.95990 1.41879 1.43375 1.50945 1.56774 1.84738 2.19429 2.50721 3.08833 3.30579 3.37301 3.46467 3.54894 3.59882 3.64194 3.83915 3.85011 3.89271 3.91580 4.05041 4.12243 4.20725 4.30456 4.35978 4.42177 4.46222 4.54649 4.60725 4.67526 4.69100 4.78098 4.82683 4.88453 4.93003 5.08478 5.09532 5.11052 5.11717 5.22909 5.29347 5.36598 5.47668 5.50841 5.69054 5.80520 5.86842 6.23784 6.48892 6.99527 7.07741 7.10788 7.83386 8.01714 9.21132 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.017738 B = 0.002264 C = 0.002159 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1578.182323 B =12363.061178 C =12963.126262 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.105 4.105 3 H 0.081 0.919 4 C 0.116 3.884 5 N -0.613 5.613 6 C 0.530 3.470 7 O -0.577 6.577 8 C -0.101 4.101 9 C -0.046 4.046 10 C -0.118 4.118 11 C -0.084 4.084 12 C -0.131 4.131 13 C 0.143 3.857 14 N -0.516 5.516 15 C 0.062 3.938 16 C -0.160 4.160 17 C -0.042 4.042 18 C -0.114 4.114 19 C 0.083 3.917 20 C 0.173 3.827 21 H 0.069 0.931 22 N -0.737 5.737 23 C -0.227 4.227 24 H 0.064 0.936 25 C -0.059 4.059 26 N -0.981 5.981 27 Si 0.947 3.053 28 H -0.280 1.280 29 H -0.250 1.250 30 H -0.302 1.302 31 H 0.051 0.949 32 H 0.073 0.927 33 H 0.064 0.936 34 H 0.075 0.925 35 H 0.077 0.923 36 H 0.121 0.879 37 H 0.121 0.879 38 H 0.139 0.861 39 H 0.164 0.836 40 H 0.190 0.810 41 H 0.173 0.827 42 H 0.156 0.844 43 H 0.138 0.862 44 H 0.070 0.930 45 H 0.071 0.929 46 H 0.367 0.633 47 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.942 -3.839 -20.907 23.061 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.125 4.125 3 H 0.100 0.900 4 C -0.007 4.007 5 N -0.346 5.346 6 C 0.320 3.680 7 O -0.458 6.458 8 C -0.140 4.140 9 C -0.048 4.048 10 C -0.136 4.136 11 C -0.103 4.103 12 C -0.133 4.133 13 C -0.028 4.028 14 N -0.224 5.224 15 C -0.081 4.081 16 C -0.179 4.179 17 C -0.047 4.047 18 C -0.132 4.132 19 C -0.042 4.042 20 C 0.063 3.937 21 H 0.087 0.913 22 N -0.380 5.380 23 C -0.358 4.358 24 H 0.082 0.918 25 C -0.251 4.251 26 N -0.631 5.631 27 Si 0.775 3.225 28 H -0.206 1.206 29 H -0.174 1.174 30 H -0.229 1.229 31 H 0.070 0.930 32 H 0.092 0.908 33 H 0.083 0.917 34 H 0.093 0.907 35 H 0.095 0.905 36 H 0.139 0.861 37 H 0.139 0.861 38 H 0.157 0.843 39 H 0.181 0.819 40 H 0.207 0.793 41 H 0.190 0.810 42 H 0.174 0.826 43 H 0.156 0.844 44 H 0.088 0.912 45 H 0.090 0.910 46 H 0.201 0.799 47 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 9.440 -4.339 -22.088 24.409 hybrid contribution -0.661 1.121 1.431 1.934 sum 8.779 -3.218 -20.657 22.675 Atomic orbital electron populations 1.21612 0.92412 1.02743 1.02233 1.22574 0.97521 0.99117 0.93251 0.90043 1.22285 0.82622 0.98509 0.97242 1.48564 1.12466 1.66027 1.07591 1.20518 0.85267 0.76554 0.85697 1.90696 1.83791 1.55367 1.15897 1.20779 0.90312 1.05628 0.97260 1.19335 0.95422 0.93826 0.96205 1.21064 0.95697 0.99425 0.97389 1.21259 0.98238 0.95632 0.95216 1.19313 0.99224 0.95294 0.99449 1.23659 0.94313 0.94103 0.90717 1.67463 1.24163 1.01500 1.29315 1.22550 0.92235 0.98766 0.94507 1.22159 1.00700 0.96827 0.98219 1.18441 0.95904 0.94385 0.95970 1.20956 0.98554 0.97404 0.96324 1.22962 1.01431 1.01947 0.77892 1.21397 0.92960 0.93678 0.85640 0.91287 1.42647 1.88794 1.04601 1.01923 1.18999 1.40512 0.92781 0.83461 0.91776 1.25423 1.02687 1.02116 0.94834 1.69873 1.59040 1.35924 0.98268 0.85530 0.78170 0.81431 0.77357 1.20623 1.17442 1.22937 0.92983 0.90829 0.91730 0.90704 0.90478 0.86109 0.86127 0.84302 0.81889 0.79291 0.80951 0.82622 0.84399 0.91171 0.91034 0.79883 0.93455 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.96 9.31 71.98 0.67 -2.29 16 2 C -0.10 -2.66 3.25 -9.40 -0.03 -2.69 16 3 H 0.08 2.11 8.00 -2.38 -0.02 2.09 16 4 C 0.12 2.83 6.37 86.85 0.55 3.39 16 5 N -0.61 -16.13 3.33 -811.78 -2.70 -18.83 16 6 C 0.53 14.35 7.84 87.66 0.69 15.04 16 7 O -0.58 -19.45 16.29 -3.06 -0.05 -19.50 16 8 C -0.10 -2.09 4.99 29.10 0.15 -1.95 16 9 C -0.05 -1.01 4.34 -20.06 -0.09 -1.10 16 10 C -0.12 -2.34 9.58 22.06 0.21 -2.13 16 11 C -0.08 -1.48 9.81 22.31 0.22 -1.26 16 12 C -0.13 -2.69 5.74 -21.31 -0.12 -2.81 16 13 C 0.14 2.64 11.05 85.32 0.94 3.58 16 14 N -0.52 -10.95 10.30 -195.53 -2.01 -12.97 16 15 C 0.06 1.15 11.07 84.09 0.93 2.08 16 16 C -0.16 -3.00 9.88 22.39 0.22 -2.78 16 17 C -0.04 -0.93 5.75 -21.28 -0.12 -1.05 16 18 C -0.11 -2.51 9.41 22.28 0.21 -2.30 16 19 C 0.08 2.34 6.24 86.73 0.54 2.88 16 20 C 0.17 5.46 3.06 46.18 0.14 5.60 16 21 H 0.07 2.28 8.02 -2.39 -0.02 2.27 16 22 N -0.74 -29.72 4.98 -317.31 -1.58 -31.30 16 23 C -0.23 -11.56 10.46 84.03 0.88 -10.68 16 24 H 0.06 3.59 8.06 -2.91 -0.02 3.56 16 25 C -0.06 -3.21 5.50 84.86 0.47 -2.75 16 26 N -0.98 -59.47 13.97 21.65 0.30 -59.17 16 27 Si 0.95 42.31 27.74 68.60 1.90 44.21 16 28 H -0.28 -12.26 7.11 99.48 0.71 -11.55 16 29 H -0.25 -9.93 6.52 99.48 0.65 -9.28 16 30 H -0.30 -14.05 7.11 99.48 0.71 -13.34 16 31 H 0.05 1.34 8.14 -2.39 -0.02 1.32 16 32 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 33 H 0.06 1.34 8.08 -2.39 -0.02 1.32 16 34 H 0.07 1.85 8.04 -2.38 -0.02 1.83 16 35 H 0.08 1.76 7.99 -2.38 -0.02 1.74 16 36 H 0.12 2.18 8.08 -2.39 -0.02 2.16 16 37 H 0.12 2.14 8.07 -2.39 -0.02 2.12 16 38 H 0.14 2.30 8.06 -2.91 -0.02 2.27 16 39 H 0.16 1.74 8.06 -2.91 -0.02 1.71 16 40 H 0.19 2.12 8.06 -2.91 -0.02 2.10 16 41 H 0.17 2.22 8.06 -2.91 -0.02 2.20 16 42 H 0.16 2.13 8.06 -2.91 -0.02 2.11 16 43 H 0.14 2.60 8.06 -2.91 -0.02 2.58 16 44 H 0.07 2.07 8.03 -2.39 -0.02 2.05 16 45 H 0.07 1.93 8.14 -2.39 -0.02 1.91 16 46 H 0.37 14.43 5.57 -92.71 -0.52 13.92 16 47 H 0.26 14.97 8.31 -92.70 -0.77 14.20 16 Total: -1.00 -70.91 390.00 2.72 -68.19 By element: Atomic # 1 Polarization: 30.20 SS G_CDS: 0.40 Total: 30.59 kcal Atomic # 6 Polarization: -7.68 SS G_CDS: 6.46 Total: -1.22 kcal Atomic # 7 Polarization: -116.28 SS G_CDS: -5.99 Total: -122.27 kcal Atomic # 8 Polarization: -19.45 SS G_CDS: -0.05 Total: -19.50 kcal Atomic # 14 Polarization: 42.31 SS G_CDS: 1.90 Total: 44.21 kcal Total: -70.91 2.72 -68.19 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054896847.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.273 kcal (2) G-P(sol) polarization free energy of solvation -70.910 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.363 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.717 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.193 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.080 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds