Wall clock time and date at job start Tue Mar 31 2020 22:47:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08996 * 110.88607 * 2 1 4 4 C 1.55131 * 110.93310 * 124.07261 * 2 1 3 5 5 N 1.47425 * 104.71880 * 155.29290 * 4 2 1 6 6 C 1.34780 * 125.65132 * 155.81597 * 5 4 2 7 7 O 1.21277 * 119.99434 * 359.71308 * 6 5 4 8 8 C 1.50703 * 120.00261 * 179.71236 * 6 5 4 9 9 C 1.50693 * 109.47126 * 180.02562 * 8 6 5 10 10 C 1.39375 * 119.49239 * 89.99851 * 9 8 6 11 11 C 1.36173 * 121.08503 * 180.02562 * 10 9 8 12 12 C 1.40373 * 119.51785 * 359.97438 * 11 10 9 13 13 C 1.40434 * 122.08063 * 179.97438 * 12 11 10 14 14 N 1.31242 * 119.87999 * 180.02562 * 13 12 11 15 15 C 1.32616 * 122.77864 * 359.70603 * 14 13 12 16 16 C 1.36171 * 121.87185 * 0.59863 * 15 14 13 17 17 C 1.40696 * 118.66853 * 359.42295 * 16 15 14 18 18 C 1.36219 * 119.49040 * 270.02349 * 9 8 6 19 19 C 1.47023 * 108.70294 * 335.54737 * 5 4 2 20 20 C 1.54326 * 107.27169 * 1.29083 * 19 5 4 21 21 H 1.09002 * 110.71864 * 263.65200 * 20 19 5 22 22 N 1.46496 * 110.72124 * 140.55318 * 20 19 5 23 23 C 1.36939 * 120.00141 * 86.45515 * 22 20 19 24 24 H 1.07999 * 119.99797 * 359.97438 * 23 22 20 25 25 C 1.38811 * 120.00370 * 179.97438 * 23 22 20 26 26 N 1.31623 * 119.99775 * 0.02562 * 25 23 22 27 27 Si 1.86801 * 120.00206 * 179.97438 * 25 23 22 28 28 H 1.48498 * 109.46565 * 60.00003 * 27 25 23 29 29 H 1.48497 * 109.46798 * 179.97438 * 27 25 23 30 30 H 1.48504 * 109.47048 * 300.00284 * 27 25 23 31 31 H 1.09003 * 109.47274 * 183.88092 * 1 2 3 32 32 H 1.08997 * 109.47686 * 303.88495 * 1 2 3 33 33 H 1.08997 * 109.46623 * 63.88889 * 1 2 3 34 34 H 1.08993 * 110.50342 * 36.44851 * 4 2 1 35 35 H 1.08998 * 110.34344 * 274.04707 * 4 2 1 36 36 H 1.08999 * 109.46929 * 59.99971 * 8 6 5 37 37 H 1.08993 * 109.46888 * 300.00406 * 8 6 5 38 38 H 1.07998 * 119.45164 * 0.04977 * 10 9 8 39 39 H 1.08000 * 120.23708 * 179.97438 * 11 10 9 40 40 H 1.07996 * 120.06130 * 0.02562 * 13 12 11 41 41 H 1.07993 * 119.06336 * 180.30498 * 15 14 13 42 42 H 1.08002 * 120.66740 * 179.70456 * 16 15 14 43 43 H 1.08005 * 120.26094 * 359.97438 * 18 9 8 44 44 H 1.08997 * 109.88223 * 120.70567 * 19 5 4 45 45 H 1.09001 * 109.88647 * 241.71935 * 19 5 4 46 46 H 0.97002 * 119.99964 * 266.45354 * 22 20 19 47 47 H 0.96997 * 119.99978 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9186 1.0183 0.0000 4 6 2.0843 -0.8117 1.2002 5 7 3.4280 -1.2421 0.7727 6 6 4.4490 -1.5602 1.5931 7 8 4.3024 -1.4987 2.7954 8 6 5.7726 -1.9923 1.0163 9 6 6.7358 -2.2889 2.1366 10 6 6.8032 -3.5788 2.6601 11 6 7.6614 -3.8826 3.6728 12 6 8.4927 -2.8813 4.1987 13 6 9.3968 -3.1348 5.2430 14 7 10.1536 -2.1658 5.7023 15 6 10.1131 -0.9320 5.2177 16 6 9.2669 -0.5829 4.2096 17 6 8.4236 -1.5683 3.6645 18 6 7.5269 -1.2920 2.6224 19 6 3.4679 -1.2732 -0.6966 20 6 2.0862 -0.8076 -1.2024 21 1 1.4482 -1.6632 -1.4240 22 7 2.2279 0.0500 -2.3817 23 6 2.3025 -0.5087 -3.6297 24 1 2.2573 -1.5816 -3.7445 25 6 2.4362 0.3039 -4.7471 26 7 2.4918 1.6115 -4.6070 27 14 2.5387 -0.4583 -6.4494 28 1 1.3033 -1.2373 -6.7180 29 1 2.6766 0.6160 -7.4652 30 1 3.7170 -1.3596 -6.5181 31 1 -0.3634 -1.0253 0.0696 32 1 -0.3634 0.5729 0.8531 33 1 -0.3632 0.4523 -0.9228 34 1 1.4537 -1.6783 1.3988 35 1 2.1523 -0.1800 2.0858 36 1 6.1749 -1.1942 0.3924 37 1 5.6306 -2.8887 0.4128 38 1 6.1646 -4.3501 2.2556 39 1 7.7020 -4.8867 4.0684 40 1 9.4693 -4.1252 5.6674 41 1 10.7666 -0.1818 5.6377 42 1 9.2468 0.4291 3.8329 43 1 7.4646 -0.2967 2.2076 44 1 4.2425 -0.5984 -1.0608 45 1 3.6685 -2.2878 -1.0408 46 1 2.2688 1.0136 -2.2784 47 1 2.5849 2.1793 -5.3879 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001054896849.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:47:22 Heat of formation + Delta-G solvation = 27.758036 kcal Electronic energy + Delta-G solvation = -28144.519666 eV Core-core repulsion = 24291.955573 eV Total energy + Delta-G solvation = -3852.564093 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -41.04840 -39.91844 -38.12229 -37.17523 -34.13305 -33.31828 -32.91620 -32.33970 -30.78371 -29.98413 -28.51619 -27.55072 -25.97553 -24.18606 -24.02411 -23.02237 -22.40322 -21.51681 -20.02690 -19.14059 -17.98171 -17.29783 -17.18539 -16.93879 -16.71201 -16.03878 -15.31506 -15.15199 -14.92474 -14.42982 -14.38900 -14.17419 -13.96208 -13.68155 -13.58918 -13.28498 -13.10560 -12.87127 -12.71231 -12.57822 -12.29464 -12.02144 -11.92342 -11.90454 -11.59662 -11.23651 -11.20368 -11.04792 -10.79749 -10.67361 -10.40085 -10.34784 -10.04849 -9.88868 -9.75282 -9.69902 -9.10261 -9.03663 -8.40223 -8.24847 -7.16959 -5.91710 -3.23042 0.17692 0.70092 1.74804 2.74101 2.77414 3.24940 3.34600 3.39994 3.40813 3.90230 4.18261 4.31418 4.39971 4.45372 4.61154 4.65446 4.66043 4.82024 4.95559 5.04506 5.09045 5.10168 5.14956 5.23146 5.39685 5.40550 5.49287 5.50876 5.56557 5.62259 5.69775 5.77037 5.84442 5.85922 5.87014 5.94112 6.12790 6.14980 6.19148 6.30126 6.33206 6.41134 6.43573 6.48408 6.55404 6.64408 6.80063 7.55696 7.72250 7.75750 8.25015 8.29135 9.37593 9.91006 10.25814 11.29978 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.015278 B = 0.002267 C = 0.002123 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1832.283126 B =12347.995617 C =13187.586558 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.113 4.113 3 H 0.084 0.916 4 C 0.114 3.886 5 N -0.613 5.613 6 C 0.529 3.471 7 O -0.547 6.547 8 C -0.106 4.106 9 C -0.034 4.034 10 C -0.099 4.099 11 C -0.090 4.090 12 C -0.113 4.113 13 C 0.144 3.856 14 N -0.493 5.493 15 C 0.070 3.930 16 C -0.152 4.152 17 C -0.021 4.021 18 C -0.100 4.100 19 C 0.070 3.930 20 C 0.177 3.823 21 H 0.066 0.934 22 N -0.711 5.711 23 C -0.250 4.250 24 H 0.072 0.928 25 C -0.007 4.007 26 N -0.929 5.929 27 Si 0.908 3.092 28 H -0.285 1.285 29 H -0.291 1.291 30 H -0.285 1.285 31 H 0.053 0.947 32 H 0.049 0.951 33 H 0.068 0.932 34 H 0.065 0.935 35 H 0.071 0.929 36 H 0.107 0.893 37 H 0.106 0.894 38 H 0.127 0.873 39 H 0.134 0.866 40 H 0.162 0.838 41 H 0.151 0.849 42 H 0.137 0.863 43 H 0.131 0.869 44 H 0.074 0.926 45 H 0.060 0.940 46 H 0.387 0.613 47 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.703 -8.175 15.651 19.686 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.133 4.133 3 H 0.102 0.898 4 C -0.009 4.009 5 N -0.346 5.346 6 C 0.317 3.683 7 O -0.425 6.425 8 C -0.145 4.145 9 C -0.036 4.036 10 C -0.118 4.118 11 C -0.109 4.109 12 C -0.115 4.115 13 C -0.027 4.027 14 N -0.201 5.201 15 C -0.073 4.073 16 C -0.171 4.171 17 C -0.026 4.026 18 C -0.118 4.118 19 C -0.056 4.056 20 C 0.065 3.935 21 H 0.084 0.916 22 N -0.351 5.351 23 C -0.381 4.381 24 H 0.090 0.910 25 C -0.204 4.204 26 N -0.576 5.576 27 Si 0.738 3.262 28 H -0.211 1.211 29 H -0.216 1.216 30 H -0.211 1.211 31 H 0.072 0.928 32 H 0.068 0.932 33 H 0.087 0.913 34 H 0.084 0.916 35 H 0.090 0.910 36 H 0.125 0.875 37 H 0.124 0.876 38 H 0.144 0.856 39 H 0.151 0.849 40 H 0.179 0.821 41 H 0.169 0.831 42 H 0.155 0.845 43 H 0.149 0.851 44 H 0.093 0.907 45 H 0.078 0.922 46 H 0.221 0.779 47 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 9.320 -8.246 16.814 20.918 hybrid contribution -0.487 0.191 -1.831 1.905 sum 8.833 -8.056 14.982 19.167 Atomic orbital electron populations 1.21614 0.93857 1.01565 1.02129 1.22660 0.96346 0.99742 0.94542 0.89800 1.22302 0.82697 0.98092 0.97775 1.48559 1.11923 1.66003 1.08160 1.20035 0.84600 0.77490 0.86193 1.90702 1.83194 1.54083 1.14553 1.20752 0.92134 1.04550 0.97076 1.19196 0.94895 0.93593 0.95919 1.20802 0.98206 0.96149 0.96595 1.20903 0.95237 0.98568 0.96237 1.19025 0.99456 0.94206 0.98841 1.23171 0.89862 0.98209 0.91483 1.67404 1.23092 1.01082 1.28561 1.22133 0.97534 0.93283 0.94348 1.21930 0.96939 0.99925 0.98330 1.18128 0.95850 0.93019 0.95566 1.20805 0.95655 0.99265 0.96071 1.23387 1.03548 1.01272 0.77345 1.21241 0.91516 0.93865 0.86911 0.91579 1.42356 1.86970 1.05292 1.00530 1.19180 1.43479 0.91873 0.83576 0.91028 1.24769 1.02250 0.95354 0.98018 1.69647 1.56246 1.02298 1.29397 0.86270 0.77952 0.77883 0.84061 1.21134 1.21646 1.21139 0.92835 0.93158 0.91302 0.91649 0.91011 0.87483 0.87607 0.85553 0.84859 0.82122 0.83147 0.84490 0.85144 0.90729 0.92205 0.77854 0.93243 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.80 9.31 37.16 0.35 -1.45 16 2 C -0.11 -1.69 3.26 -88.35 -0.29 -1.97 16 3 H 0.08 1.34 8.00 -51.93 -0.42 0.92 16 4 C 0.11 1.62 6.38 -2.41 -0.02 1.61 16 5 N -0.61 -9.10 3.32 -170.38 -0.57 -9.67 16 6 C 0.53 7.89 7.84 -10.98 -0.09 7.81 16 7 O -0.55 -9.86 16.29 5.56 0.09 -9.77 16 8 C -0.11 -1.23 4.99 -29.04 -0.14 -1.37 16 9 C -0.03 -0.41 4.34 -104.93 -0.46 -0.86 16 10 C -0.10 -1.06 9.58 -39.90 -0.38 -1.44 16 11 C -0.09 -0.87 9.81 -39.52 -0.39 -1.26 16 12 C -0.11 -1.25 5.74 -106.86 -0.61 -1.87 16 13 C 0.14 1.46 11.05 -16.98 -0.19 1.27 16 14 N -0.49 -5.65 10.30 -13.16 -0.14 -5.78 16 15 C 0.07 0.71 11.07 -17.96 -0.20 0.51 16 16 C -0.15 -1.56 9.88 -39.40 -0.39 -1.95 16 17 C -0.02 -0.24 5.75 -106.81 -0.61 -0.86 16 18 C -0.10 -1.19 9.42 -39.56 -0.37 -1.56 16 19 C 0.07 1.10 6.24 -3.06 -0.02 1.08 16 20 C 0.18 3.08 3.05 -66.10 -0.20 2.88 16 21 H 0.07 1.17 8.02 -51.93 -0.42 0.75 16 22 N -0.71 -15.89 5.18 -51.65 -0.27 -16.16 16 23 C -0.25 -6.30 9.98 -15.06 -0.15 -6.45 16 24 H 0.07 1.74 7.83 -52.49 -0.41 1.33 16 25 C -0.01 -0.19 5.50 -17.43 -0.10 -0.28 16 26 N -0.93 -26.30 13.06 55.49 0.72 -25.57 16 27 Si 0.91 21.00 29.55 -169.99 -5.02 15.98 16 28 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 29 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 30 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 31 H 0.05 0.66 8.07 -51.93 -0.42 0.24 16 32 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 33 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 34 H 0.07 0.87 7.99 -51.93 -0.41 0.45 16 35 H 0.07 1.04 8.03 -51.93 -0.42 0.62 16 36 H 0.11 1.15 8.07 -51.93 -0.42 0.73 16 37 H 0.11 1.04 8.08 -51.93 -0.42 0.62 16 38 H 0.13 1.12 8.06 -52.49 -0.42 0.70 16 39 H 0.13 0.88 8.06 -52.49 -0.42 0.46 16 40 H 0.16 1.10 8.06 -52.49 -0.42 0.68 16 41 H 0.15 1.13 8.06 -52.49 -0.42 0.71 16 42 H 0.14 1.10 8.06 -52.49 -0.42 0.68 16 43 H 0.13 1.39 8.06 -52.48 -0.42 0.96 16 44 H 0.07 1.26 8.03 -51.93 -0.42 0.84 16 45 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 46 H 0.39 9.36 7.71 -40.82 -0.31 9.04 16 47 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 LS Contribution 393.13 15.07 5.92 5.92 Total: -1.00 -31.58 393.13 -10.52 -42.10 By element: Atomic # 1 Polarization: 16.12 SS G_CDS: -7.01 Total: 9.12 kcal Atomic # 6 Polarization: -1.92 SS G_CDS: -4.26 Total: -6.17 kcal Atomic # 7 Polarization: -56.94 SS G_CDS: -0.24 Total: -57.18 kcal Atomic # 8 Polarization: -9.86 SS G_CDS: 0.09 Total: -9.77 kcal Atomic # 14 Polarization: 21.00 SS G_CDS: -5.02 Total: 15.98 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -31.58 -10.52 -42.10 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054896849.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.855 kcal (2) G-P(sol) polarization free energy of solvation -31.582 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.273 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.515 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.097 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.758 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds