Wall clock time and date at job start Tue Mar 31 2020 22:48:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09005 * 110.63992 * 2 1 4 4 C 1.54327 * 110.87080 * 236.75766 * 2 1 3 5 5 N 1.47022 * 107.26741 * 219.37085 * 4 2 1 6 6 C 1.34778 * 125.64623 * 178.97618 * 5 4 2 7 7 O 1.21277 * 120.00433 * 0.02562 * 6 5 4 8 8 C 1.50706 * 119.99944 * 179.97438 * 6 5 4 9 9 C 1.50694 * 109.47276 * 180.02562 * 8 6 5 10 10 C 1.36106 * 120.12838 * 265.00548 * 9 8 6 11 11 C 1.39312 * 121.06794 * 180.02562 * 10 9 8 12 12 C 1.36176 * 120.87272 * 359.97438 * 11 10 9 13 13 C 1.40390 * 119.61111 * 0.02562 * 12 11 10 14 14 C 1.40771 * 121.39058 * 180.02562 * 13 12 11 15 15 C 1.36576 * 118.15664 * 179.97438 * 14 13 12 16 16 C 1.39336 * 119.93459 * 0.02562 * 15 14 13 17 17 N 1.31076 * 121.75740 * 359.97438 * 16 15 14 18 18 C 1.33687 * 121.31740 * 359.70673 * 17 16 15 19 19 C 1.47525 * 108.71940 * 358.94246 * 5 4 2 20 20 C 1.54913 * 104.78113 * 24.11599 * 19 5 4 21 21 H 1.09002 * 111.00740 * 204.90321 * 20 19 5 22 22 N 1.46506 * 111.00039 * 81.09436 * 20 19 5 23 23 C 1.36934 * 120.00324 * 89.57868 * 22 20 19 24 24 H 1.07997 * 119.99709 * 0.02562 * 23 22 20 25 25 C 1.38805 * 120.00305 * 179.97438 * 23 22 20 26 26 N 1.31623 * 119.99748 * 0.02562 * 25 23 22 27 27 Si 1.86801 * 120.00113 * 180.02562 * 25 23 22 28 28 H 1.48495 * 109.46829 * 60.00824 * 27 25 23 29 29 H 1.48509 * 109.47031 * 180.02562 * 27 25 23 30 30 H 1.48498 * 109.47179 * 300.00361 * 27 25 23 31 31 H 1.08997 * 109.46805 * 296.85318 * 1 2 3 32 32 H 1.08997 * 109.47316 * 56.85777 * 1 2 3 33 33 H 1.09005 * 109.46834 * 176.86029 * 1 2 3 34 34 H 1.08995 * 109.88249 * 338.78278 * 4 2 1 35 35 H 1.08997 * 109.88537 * 99.95368 * 4 2 1 36 36 H 1.08996 * 109.46928 * 300.00615 * 8 6 5 37 37 H 1.09007 * 109.46764 * 59.99870 * 8 6 5 38 38 H 1.08009 * 119.46698 * 359.97438 * 10 9 8 39 39 H 1.08002 * 119.56406 * 179.97438 * 11 10 9 40 40 H 1.07999 * 120.19606 * 179.97438 * 12 11 10 41 41 H 1.08007 * 120.91989 * 359.97438 * 14 13 12 42 42 H 1.07997 * 120.02875 * 180.02562 * 15 14 13 43 43 H 1.07998 * 119.11732 * 179.97438 * 16 15 14 44 44 H 1.09001 * 110.36898 * 265.30990 * 19 5 4 45 45 H 1.08991 * 110.41716 * 142.95261 * 19 5 4 46 46 H 0.97002 * 119.99472 * 269.57869 * 22 20 19 47 47 H 0.97000 * 119.99823 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9143 1.0201 0.0000 4 6 2.0798 -0.7905 -1.2060 5 7 3.2494 -1.5469 -0.7355 6 6 4.0004 -2.3783 -1.4846 7 8 3.7302 -2.5518 -2.6541 8 6 5.1768 -3.0916 -0.8693 9 6 5.8432 -3.9527 -1.9111 10 6 5.5169 -5.2697 -2.0195 11 6 6.1210 -6.0837 -2.9751 12 6 7.0562 -5.5831 -3.8291 13 6 7.4173 -4.2290 -3.7459 14 6 8.3791 -3.6722 -4.6101 15 6 8.6799 -2.3472 -4.4714 16 6 8.0401 -1.5875 -3.4942 17 7 7.1451 -2.1090 -2.6911 18 6 6.8003 -3.3977 -2.7781 19 6 3.4656 -1.2447 0.6922 20 6 2.0790 -0.7934 1.2150 21 1 2.1814 -0.1492 2.0883 22 7 1.2295 -1.9487 1.5151 23 6 1.2528 -2.5098 2.7640 24 1 1.8970 -2.1003 3.5279 25 6 0.4475 -3.6040 3.0484 26 7 -0.3380 -4.1027 2.1174 27 14 0.4787 -4.3689 4.7524 28 1 0.0732 -3.3542 5.7578 29 1 -0.4640 -5.5155 4.7976 30 1 1.8520 -4.8454 5.0560 31 1 -0.3633 0.4642 0.9168 32 1 -0.3634 0.5618 -0.8604 33 1 -0.3633 -1.0262 -0.0563 34 1 1.3191 -1.4772 -1.5771 35 1 2.3775 -0.1014 -1.9964 36 1 5.8904 -2.3584 -0.4938 37 1 4.8321 -3.7177 -0.0462 38 1 4.7782 -5.6906 -1.3534 39 1 5.8441 -7.1256 -3.0395 40 1 7.5179 -6.2241 -4.5654 41 1 8.8655 -4.2762 -5.3618 42 1 9.4129 -1.8889 -5.1187 43 1 8.2884 -0.5411 -3.3959 44 1 4.1932 -0.4408 0.8039 45 1 3.7995 -2.1360 1.2232 46 1 0.6506 -2.3162 0.8290 47 1 -0.9010 -4.8671 2.3163 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001054951136.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:48:01 Heat of formation + Delta-G solvation = 34.748411 kcal Electronic energy + Delta-G solvation = -29195.754686 eV Core-core repulsion = 25343.493719 eV Total energy + Delta-G solvation = -3852.260967 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -40.97532 -39.57387 -37.68523 -36.95587 -34.08887 -33.80468 -32.38745 -31.28569 -30.58805 -30.45010 -27.98736 -27.62808 -25.55017 -24.22113 -23.83613 -23.63400 -22.11207 -21.11247 -19.19087 -18.79365 -18.32461 -17.46430 -17.00988 -16.81445 -16.45750 -15.79718 -15.11629 -14.77258 -14.56726 -14.35311 -14.27349 -14.03778 -13.84187 -13.62373 -13.16973 -13.03699 -12.94904 -12.86994 -12.56179 -12.11932 -11.97743 -11.74516 -11.67086 -11.61286 -11.47028 -11.21627 -11.08602 -10.91266 -10.69905 -10.53925 -10.42801 -10.29457 -9.92819 -9.64871 -9.52363 -9.41123 -9.01605 -8.80254 -8.18930 -8.10420 -7.02101 -5.82456 -3.12274 0.33436 0.79060 1.92999 2.88506 3.15554 3.39820 3.44837 3.45975 3.51806 4.08778 4.26653 4.43693 4.53127 4.62239 4.74110 4.80946 4.89576 5.00559 5.09478 5.21368 5.26339 5.29693 5.36462 5.38358 5.46110 5.59037 5.66068 5.70638 5.78277 5.82998 5.88363 5.97586 5.98998 6.01829 6.08683 6.24335 6.26044 6.34365 6.39137 6.41751 6.43302 6.48168 6.55791 6.69445 6.82286 6.86023 6.96135 7.63772 7.88778 8.05404 8.35326 8.67083 9.47023 10.03180 10.38073 11.39466 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.013414 B = 0.003110 C = 0.002736 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2086.941361 B = 9001.792072 C =10231.433298 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.114 4.114 3 H 0.078 0.922 4 C 0.119 3.881 5 N -0.604 5.604 6 C 0.541 3.459 7 O -0.551 6.551 8 C -0.093 4.093 9 C -0.030 4.030 10 C -0.093 4.093 11 C -0.106 4.106 12 C -0.107 4.107 13 C -0.102 4.102 14 C -0.060 4.060 15 C -0.180 4.180 16 C 0.125 3.875 17 N -0.464 5.464 18 C 0.142 3.858 19 C 0.069 3.931 20 C 0.171 3.829 21 H 0.072 0.928 22 N -0.709 5.709 23 C -0.246 4.246 24 H 0.071 0.929 25 C -0.008 4.008 26 N -0.929 5.929 27 Si 0.906 3.094 28 H -0.286 1.286 29 H -0.292 1.292 30 H -0.286 1.286 31 H 0.059 0.941 32 H 0.043 0.957 33 H 0.068 0.932 34 H 0.065 0.935 35 H 0.055 0.945 36 H 0.108 0.892 37 H 0.104 0.896 38 H 0.132 0.868 39 H 0.128 0.872 40 H 0.128 0.872 41 H 0.136 0.864 42 H 0.134 0.866 43 H 0.156 0.844 44 H 0.056 0.944 45 H 0.079 0.921 46 H 0.387 0.613 47 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.744 3.243 -11.107 20.353 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.134 4.134 3 H 0.097 0.903 4 C -0.004 4.004 5 N -0.337 5.337 6 C 0.329 3.671 7 O -0.430 6.430 8 C -0.132 4.132 9 C -0.031 4.031 10 C -0.113 4.113 11 C -0.124 4.124 12 C -0.125 4.125 13 C -0.104 4.104 14 C -0.086 4.086 15 C -0.200 4.200 16 C -0.048 4.048 17 N -0.172 5.172 18 C 0.021 3.979 19 C -0.058 4.058 20 C 0.059 3.941 21 H 0.090 0.910 22 N -0.350 5.350 23 C -0.377 4.377 24 H 0.089 0.911 25 C -0.205 4.205 26 N -0.576 5.576 27 Si 0.737 3.263 28 H -0.212 1.212 29 H -0.218 1.218 30 H -0.212 1.212 31 H 0.078 0.922 32 H 0.062 0.938 33 H 0.087 0.913 34 H 0.083 0.917 35 H 0.074 0.926 36 H 0.126 0.874 37 H 0.122 0.878 38 H 0.150 0.850 39 H 0.146 0.854 40 H 0.146 0.854 41 H 0.153 0.847 42 H 0.152 0.848 43 H 0.173 0.827 44 H 0.074 0.926 45 H 0.098 0.902 46 H 0.223 0.777 47 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 16.148 3.463 -10.896 19.785 hybrid contribution 0.269 -1.130 0.023 1.162 sum 16.417 2.334 -10.873 19.829 Atomic orbital electron populations 1.21590 0.93537 1.02940 1.00781 1.22507 0.97018 0.98517 0.95357 0.90344 1.21891 0.87818 0.94297 0.96355 1.48303 1.29376 1.44205 1.11789 1.19853 0.82911 0.78495 0.85805 1.90658 1.71520 1.64212 1.16586 1.20513 0.96181 0.99308 0.97235 1.19027 0.94779 0.93657 0.95667 1.20884 0.98825 0.93137 0.98478 1.20899 0.96177 1.00177 0.95110 1.20915 0.98457 0.93575 0.99599 1.18793 0.98601 0.95285 0.97728 1.21418 0.94904 0.95408 0.96838 1.21840 1.02325 0.95120 1.00694 1.22922 0.91021 1.00195 0.90613 1.67984 1.12758 1.11705 1.24736 1.18614 0.95634 0.89256 0.94386 1.23422 1.01091 1.00684 0.80564 1.21359 0.88598 0.89881 0.94277 0.91036 1.42371 1.47717 1.32488 1.12408 1.19185 1.20060 1.09510 0.88970 0.91060 1.24745 0.99231 0.98828 0.97704 1.69657 1.29035 1.26410 1.32518 0.86289 0.77231 0.78695 0.84050 1.21226 1.21755 1.21242 0.92175 0.93806 0.91288 0.91690 0.92625 0.87431 0.87766 0.84972 0.85381 0.85438 0.84653 0.84796 0.82673 0.92611 0.90244 0.77749 0.93362 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.12 8.73 37.16 0.32 -1.79 16 2 C -0.11 -1.81 3.41 -88.79 -0.30 -2.12 16 3 H 0.08 1.07 8.14 -51.93 -0.42 0.64 16 4 C 0.12 2.08 6.46 -3.06 -0.02 2.06 16 5 N -0.60 -10.98 3.33 -170.44 -0.57 -11.55 16 6 C 0.54 10.34 7.84 -10.98 -0.09 10.25 16 7 O -0.55 -12.27 16.36 5.56 0.09 -12.18 16 8 C -0.09 -1.48 4.57 -29.04 -0.13 -1.61 16 9 C -0.03 -0.47 4.38 -104.52 -0.46 -0.93 16 10 C -0.09 -1.32 9.56 -39.95 -0.38 -1.70 16 11 C -0.11 -1.24 9.95 -39.92 -0.40 -1.64 16 12 C -0.11 -1.20 9.78 -39.51 -0.39 -1.58 16 13 C -0.10 -1.33 5.74 -106.80 -0.61 -1.94 16 14 C -0.06 -0.60 9.90 -39.23 -0.39 -0.99 16 15 C -0.18 -1.68 10.03 -39.77 -0.40 -2.08 16 16 C 0.13 1.43 11.14 -17.47 -0.19 1.23 16 17 N -0.46 -6.96 9.51 -10.97 -0.10 -7.06 16 18 C 0.14 2.20 6.58 -84.85 -0.56 1.64 16 19 C 0.07 1.16 6.39 -2.47 -0.02 1.14 16 20 C 0.17 3.14 3.45 -65.78 -0.23 2.92 16 21 H 0.07 1.27 8.11 -51.93 -0.42 0.85 16 22 N -0.71 -16.54 4.67 -51.35 -0.24 -16.78 16 23 C -0.25 -6.39 9.97 -15.06 -0.15 -6.54 16 24 H 0.07 1.77 7.83 -52.49 -0.41 1.36 16 25 C -0.01 -0.23 5.50 -17.43 -0.10 -0.33 16 26 N -0.93 -27.18 13.06 55.49 0.72 -26.45 16 27 Si 0.91 21.59 29.55 -169.99 -5.02 16.56 16 28 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 29 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 30 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 31 H 0.06 0.98 8.14 -51.93 -0.42 0.55 16 32 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 33 H 0.07 1.31 6.43 -51.93 -0.33 0.98 16 34 H 0.06 1.25 7.78 -51.93 -0.40 0.85 16 35 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 36 H 0.11 1.60 7.71 -51.93 -0.40 1.20 16 37 H 0.10 1.58 7.75 -51.93 -0.40 1.17 16 38 H 0.13 1.75 8.04 -52.48 -0.42 1.32 16 39 H 0.13 1.15 8.06 -52.49 -0.42 0.73 16 40 H 0.13 1.02 8.06 -52.49 -0.42 0.59 16 41 H 0.14 0.92 8.06 -52.48 -0.42 0.50 16 42 H 0.13 0.80 8.06 -52.49 -0.42 0.38 16 43 H 0.16 1.28 8.06 -52.49 -0.42 0.86 16 44 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 45 H 0.08 1.43 7.48 -51.93 -0.39 1.04 16 46 H 0.39 9.89 6.23 -40.82 -0.25 9.63 16 47 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 LS Contribution 387.86 15.07 5.84 5.84 Total: -1.00 -33.63 387.86 -10.56 -44.18 By element: Atomic # 1 Polarization: 18.26 SS G_CDS: -6.80 Total: 11.45 kcal Atomic # 6 Polarization: 0.47 SS G_CDS: -4.48 Total: -4.02 kcal Atomic # 7 Polarization: -61.66 SS G_CDS: -0.19 Total: -61.85 kcal Atomic # 8 Polarization: -12.27 SS G_CDS: 0.09 Total: -12.18 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -5.02 Total: 16.56 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -33.63 -10.56 -44.18 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054951136.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.932 kcal (2) G-P(sol) polarization free energy of solvation -33.625 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.307 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.558 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.184 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.748 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds