Wall clock time and date at job start Tue Mar 31 2020 22:48:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09005 * 110.63992 * 2 1 4 4 C 1.54327 * 110.87080 * 236.75766 * 2 1 3 5 5 N 1.47022 * 107.26741 * 219.37085 * 4 2 1 6 6 C 1.34778 * 125.64623 * 178.97618 * 5 4 2 7 7 O 1.21277 * 120.00433 * 0.02562 * 6 5 4 8 8 C 1.50706 * 119.99944 * 179.97438 * 6 5 4 9 9 C 1.50694 * 109.47276 * 180.02562 * 8 6 5 10 10 C 1.36106 * 120.12838 * 265.00548 * 9 8 6 11 11 C 1.39312 * 121.06794 * 180.02562 * 10 9 8 12 12 C 1.36176 * 120.87272 * 359.97438 * 11 10 9 13 13 C 1.40390 * 119.61111 * 0.02562 * 12 11 10 14 14 C 1.40771 * 121.39058 * 180.02562 * 13 12 11 15 15 C 1.36576 * 118.15664 * 179.97438 * 14 13 12 16 16 C 1.39336 * 119.93459 * 0.02562 * 15 14 13 17 17 N 1.31076 * 121.75740 * 359.97438 * 16 15 14 18 18 C 1.33687 * 121.31740 * 359.70673 * 17 16 15 19 19 C 1.47525 * 108.71940 * 358.94246 * 5 4 2 20 20 C 1.54913 * 104.78113 * 24.11599 * 19 5 4 21 21 H 1.09002 * 111.00740 * 204.90321 * 20 19 5 22 22 N 1.46506 * 111.00039 * 81.09436 * 20 19 5 23 23 C 1.36934 * 120.00324 * 89.57868 * 22 20 19 24 24 H 1.07997 * 119.99709 * 0.02562 * 23 22 20 25 25 C 1.38805 * 120.00305 * 179.97438 * 23 22 20 26 26 N 1.31623 * 119.99748 * 0.02562 * 25 23 22 27 27 Si 1.86801 * 120.00113 * 180.02562 * 25 23 22 28 28 H 1.48495 * 109.46829 * 60.00824 * 27 25 23 29 29 H 1.48509 * 109.47031 * 180.02562 * 27 25 23 30 30 H 1.48498 * 109.47179 * 300.00361 * 27 25 23 31 31 H 1.08997 * 109.46805 * 296.85318 * 1 2 3 32 32 H 1.08997 * 109.47316 * 56.85777 * 1 2 3 33 33 H 1.09005 * 109.46834 * 176.86029 * 1 2 3 34 34 H 1.08995 * 109.88249 * 338.78278 * 4 2 1 35 35 H 1.08997 * 109.88537 * 99.95368 * 4 2 1 36 36 H 1.08996 * 109.46928 * 300.00615 * 8 6 5 37 37 H 1.09007 * 109.46764 * 59.99870 * 8 6 5 38 38 H 1.08009 * 119.46698 * 359.97438 * 10 9 8 39 39 H 1.08002 * 119.56406 * 179.97438 * 11 10 9 40 40 H 1.07999 * 120.19606 * 179.97438 * 12 11 10 41 41 H 1.08007 * 120.91989 * 359.97438 * 14 13 12 42 42 H 1.07997 * 120.02875 * 180.02562 * 15 14 13 43 43 H 1.07998 * 119.11732 * 179.97438 * 16 15 14 44 44 H 1.09001 * 110.36898 * 265.30990 * 19 5 4 45 45 H 1.08991 * 110.41716 * 142.95261 * 19 5 4 46 46 H 0.97002 * 119.99472 * 269.57869 * 22 20 19 47 47 H 0.97000 * 119.99823 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9143 1.0201 0.0000 4 6 2.0798 -0.7905 -1.2060 5 7 3.2494 -1.5469 -0.7355 6 6 4.0004 -2.3783 -1.4846 7 8 3.7302 -2.5518 -2.6541 8 6 5.1768 -3.0916 -0.8693 9 6 5.8432 -3.9527 -1.9111 10 6 5.5169 -5.2697 -2.0195 11 6 6.1210 -6.0837 -2.9751 12 6 7.0562 -5.5831 -3.8291 13 6 7.4173 -4.2290 -3.7459 14 6 8.3791 -3.6722 -4.6101 15 6 8.6799 -2.3472 -4.4714 16 6 8.0401 -1.5875 -3.4942 17 7 7.1451 -2.1090 -2.6911 18 6 6.8003 -3.3977 -2.7781 19 6 3.4656 -1.2447 0.6922 20 6 2.0790 -0.7934 1.2150 21 1 2.1814 -0.1492 2.0883 22 7 1.2295 -1.9487 1.5151 23 6 1.2528 -2.5098 2.7640 24 1 1.8970 -2.1003 3.5279 25 6 0.4475 -3.6040 3.0484 26 7 -0.3380 -4.1027 2.1174 27 14 0.4787 -4.3689 4.7524 28 1 0.0732 -3.3542 5.7578 29 1 -0.4640 -5.5155 4.7976 30 1 1.8520 -4.8454 5.0560 31 1 -0.3633 0.4642 0.9168 32 1 -0.3634 0.5618 -0.8604 33 1 -0.3633 -1.0262 -0.0563 34 1 1.3191 -1.4772 -1.5771 35 1 2.3775 -0.1014 -1.9964 36 1 5.8904 -2.3584 -0.4938 37 1 4.8321 -3.7177 -0.0462 38 1 4.7782 -5.6906 -1.3534 39 1 5.8441 -7.1256 -3.0395 40 1 7.5179 -6.2241 -4.5654 41 1 8.8655 -4.2762 -5.3618 42 1 9.4129 -1.8889 -5.1187 43 1 8.2884 -0.5411 -3.3959 44 1 4.1932 -0.4408 0.8039 45 1 3.7995 -2.1360 1.2232 46 1 0.6506 -2.3162 0.8290 47 1 -0.9010 -4.8671 2.3163 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001054951136.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:48:00 Heat of formation + Delta-G solvation = 14.539525 kcal Electronic energy + Delta-G solvation = -29196.631009 eV Core-core repulsion = 25343.493719 eV Total energy + Delta-G solvation = -3853.137290 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -41.92417 -40.98212 -39.07249 -37.98664 -35.63569 -35.06651 -33.91433 -32.43416 -32.08373 -31.46301 -29.37488 -29.04120 -26.84817 -25.77091 -25.08893 -24.52164 -23.53870 -22.18491 -20.65669 -20.19146 -19.32637 -19.19679 -18.02729 -17.91852 -17.67287 -17.27152 -16.59732 -16.18546 -15.87538 -15.59799 -15.43867 -15.21611 -15.01701 -14.84496 -14.63746 -14.43186 -14.03605 -13.88637 -13.84925 -13.55661 -13.39875 -13.05087 -12.91282 -12.86645 -12.75309 -12.67689 -12.58521 -12.26817 -12.18189 -12.16218 -11.95853 -11.49543 -11.45730 -11.35297 -11.01200 -10.84217 -10.39347 -9.70971 -9.64204 -9.13334 -8.93905 -7.90336 -5.18588 -0.53628 -0.10510 1.02288 1.50113 1.51903 1.57709 1.66335 1.96150 2.18439 2.58683 3.13737 3.38648 3.40596 3.50170 3.54015 3.78867 3.89034 3.89056 3.94254 3.99304 4.07965 4.11347 4.12079 4.24506 4.34019 4.42385 4.42794 4.56167 4.59187 4.63588 4.66309 4.77796 4.85377 4.86489 4.96888 5.00572 5.06735 5.13589 5.14947 5.20242 5.26289 5.42279 5.44157 5.47858 5.53727 5.60033 5.63080 5.94940 6.30310 6.58858 7.01149 7.18713 7.37574 8.12951 8.35773 9.32867 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.013414 B = 0.003110 C = 0.002736 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2086.941361 B = 9001.792072 C =10231.433298 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.098 4.098 3 H 0.117 0.883 4 C 0.118 3.882 5 N -0.608 5.608 6 C 0.533 3.467 7 O -0.589 6.589 8 C -0.080 4.080 9 C -0.065 4.065 10 C -0.107 4.107 11 C -0.121 4.121 12 C -0.095 4.095 13 C -0.126 4.126 14 C -0.058 4.058 15 C -0.175 4.175 16 C 0.118 3.882 17 N -0.507 5.507 18 C 0.114 3.886 19 C 0.077 3.923 20 C 0.161 3.839 21 H 0.088 0.912 22 N -0.721 5.721 23 C -0.234 4.234 24 H 0.084 0.916 25 C -0.075 4.075 26 N -0.971 5.971 27 Si 0.968 3.032 28 H -0.277 1.277 29 H -0.304 1.304 30 H -0.278 1.278 31 H 0.060 0.940 32 H 0.069 0.931 33 H 0.031 0.969 34 H 0.036 0.964 35 H 0.067 0.933 36 H 0.114 0.886 37 H 0.102 0.898 38 H 0.126 0.874 39 H 0.154 0.846 40 H 0.166 0.834 41 H 0.174 0.826 42 H 0.175 0.825 43 H 0.181 0.819 44 H 0.092 0.908 45 H 0.065 0.935 46 H 0.372 0.628 47 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.588 4.537 -11.943 23.387 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.118 4.118 3 H 0.135 0.865 4 C -0.005 4.005 5 N -0.340 5.340 6 C 0.324 3.676 7 O -0.471 6.471 8 C -0.120 4.120 9 C -0.066 4.066 10 C -0.126 4.126 11 C -0.138 4.138 12 C -0.113 4.113 13 C -0.128 4.128 14 C -0.083 4.083 15 C -0.194 4.194 16 C -0.054 4.054 17 N -0.215 5.215 18 C -0.007 4.007 19 C -0.048 4.048 20 C 0.050 3.950 21 H 0.106 0.894 22 N -0.360 5.360 23 C -0.366 4.366 24 H 0.102 0.898 25 C -0.267 4.267 26 N -0.622 5.622 27 Si 0.798 3.202 28 H -0.203 1.203 29 H -0.231 1.231 30 H -0.204 1.204 31 H 0.079 0.921 32 H 0.088 0.912 33 H 0.050 0.950 34 H 0.055 0.945 35 H 0.086 0.914 36 H 0.132 0.868 37 H 0.120 0.880 38 H 0.144 0.856 39 H 0.172 0.828 40 H 0.184 0.816 41 H 0.191 0.809 42 H 0.192 0.808 43 H 0.198 0.802 44 H 0.110 0.890 45 H 0.084 0.916 46 H 0.205 0.795 47 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 19.037 4.812 -11.698 22.856 hybrid contribution -0.507 -1.404 0.170 1.502 sum 18.529 3.408 -11.529 22.088 Atomic orbital electron populations 1.21514 0.93839 1.00968 1.01944 1.22494 0.96640 0.99684 0.92953 0.86460 1.21936 0.87086 0.93994 0.97504 1.48458 1.29262 1.43972 1.12279 1.20441 0.83480 0.78233 0.85487 1.90615 1.72697 1.65448 1.18308 1.20400 0.95005 0.99248 0.97302 1.19133 0.96380 0.94262 0.96858 1.21062 0.99050 0.93269 0.99270 1.21189 0.96564 1.01212 0.94856 1.21374 0.97285 0.93371 0.99311 1.19193 0.99541 0.95999 0.98036 1.21899 0.93728 0.96158 0.96554 1.22268 1.02174 0.94877 1.00103 1.23563 0.89933 1.01657 0.90237 1.67943 1.14806 1.11959 1.26822 1.18822 0.96342 0.90119 0.95382 1.23367 1.00793 1.01208 0.79480 1.21667 0.88562 0.88755 0.95999 0.89396 1.42543 1.48411 1.33800 1.11280 1.19632 1.18416 1.08547 0.90001 0.89780 1.25499 0.99996 1.00188 1.00988 1.69834 1.30734 1.27127 1.34471 0.85284 0.77038 0.77495 0.80361 1.20287 1.23066 1.20432 0.92135 0.91248 0.94983 0.94548 0.91428 0.86767 0.87976 0.85589 0.82800 0.81628 0.80852 0.80768 0.80177 0.89002 0.91615 0.79459 0.94371 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.98 8.73 71.98 0.63 -3.35 16 2 C -0.10 -2.97 3.41 -9.61 -0.03 -3.00 16 3 H 0.12 2.74 8.14 -2.38 -0.02 2.72 16 4 C 0.12 4.11 6.46 86.73 0.56 4.67 16 5 N -0.61 -22.33 3.33 -811.54 -2.70 -25.03 16 6 C 0.53 21.20 7.84 87.66 0.69 21.89 16 7 O -0.59 -27.49 16.36 -3.02 -0.05 -27.54 16 8 C -0.08 -2.69 4.57 29.10 0.13 -2.56 16 9 C -0.07 -2.15 4.38 -19.80 -0.09 -2.24 16 10 C -0.11 -3.17 9.56 22.03 0.21 -2.95 16 11 C -0.12 -2.79 9.95 22.05 0.22 -2.57 16 12 C -0.10 -1.96 9.78 22.31 0.22 -1.74 16 13 C -0.13 -3.10 5.74 -21.28 -0.12 -3.22 16 14 C -0.06 -0.98 9.90 22.50 0.22 -0.76 16 15 C -0.17 -2.70 10.03 22.15 0.22 -2.48 16 16 C 0.12 2.50 11.14 85.07 0.95 3.45 16 17 N -0.51 -15.17 9.51 -188.63 -1.79 -16.97 16 18 C 0.11 3.56 6.58 40.29 0.27 3.83 16 19 C 0.08 2.52 6.39 86.84 0.55 3.07 16 20 C 0.16 5.70 3.45 46.38 0.16 5.86 16 21 H 0.09 2.88 8.11 -2.39 -0.02 2.86 16 22 N -0.72 -34.08 4.67 -316.38 -1.48 -35.56 16 23 C -0.23 -12.20 9.97 84.03 0.84 -11.36 16 24 H 0.08 4.08 7.83 -2.91 -0.02 4.06 16 25 C -0.07 -4.16 5.50 84.86 0.47 -3.69 16 26 N -0.97 -59.01 13.06 21.65 0.28 -58.73 16 27 Si 0.97 45.10 29.55 68.60 2.03 47.13 16 28 H -0.28 -12.33 7.11 99.48 0.71 -11.63 16 29 H -0.30 -14.63 7.11 99.48 0.71 -13.92 16 30 H -0.28 -12.44 7.11 99.48 0.71 -11.73 16 31 H 0.06 1.91 8.14 -2.39 -0.02 1.89 16 32 H 0.07 1.83 8.14 -2.39 -0.02 1.81 16 33 H 0.03 1.25 6.43 -2.38 -0.02 1.24 16 34 H 0.04 1.47 7.78 -2.39 -0.02 1.45 16 35 H 0.07 2.19 8.14 -2.39 -0.02 2.17 16 36 H 0.11 3.55 7.71 -2.39 -0.02 3.53 16 37 H 0.10 3.33 7.75 -2.38 -0.02 3.31 16 38 H 0.13 3.65 8.04 -2.91 -0.02 3.63 16 39 H 0.15 2.59 8.06 -2.91 -0.02 2.56 16 40 H 0.17 2.01 8.06 -2.91 -0.02 1.99 16 41 H 0.17 1.51 8.06 -2.91 -0.02 1.48 16 42 H 0.17 1.22 8.06 -2.91 -0.02 1.19 16 43 H 0.18 2.59 8.06 -2.91 -0.02 2.56 16 44 H 0.09 2.41 8.14 -2.39 -0.02 2.39 16 45 H 0.07 2.36 7.48 -2.39 -0.02 2.34 16 46 H 0.37 19.80 6.23 -92.71 -0.58 19.23 16 47 H 0.25 14.82 8.31 -92.71 -0.77 14.05 16 Total: -1.00 -77.46 387.86 2.79 -74.67 By element: Atomic # 1 Polarization: 38.78 SS G_CDS: 0.40 Total: 39.18 kcal Atomic # 6 Polarization: -3.25 SS G_CDS: 6.09 Total: 2.85 kcal Atomic # 7 Polarization: -130.59 SS G_CDS: -5.69 Total: -136.28 kcal Atomic # 8 Polarization: -27.49 SS G_CDS: -0.05 Total: -27.54 kcal Atomic # 14 Polarization: 45.10 SS G_CDS: 2.03 Total: 47.13 kcal Total: -77.46 2.79 -74.67 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054951136.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.213 kcal (2) G-P(sol) polarization free energy of solvation -77.460 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.753 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.786 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.673 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.540 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds