Wall clock time and date at job start Tue Mar 31 2020 22:48:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08992 * 110.88846 * 2 1 4 4 C 1.54909 * 111.00534 * 123.88579 * 2 1 3 5 5 N 1.47418 * 104.83184 * 155.08374 * 4 2 1 6 6 C 1.34776 * 125.65074 * 155.83634 * 5 4 2 7 7 O 1.21288 * 119.99824 * 359.97438 * 6 5 4 8 8 C 1.50695 * 120.00406 * 179.97438 * 6 5 4 9 9 C 1.50704 * 109.47528 * 179.97438 * 8 6 5 10 10 C 1.36111 * 120.12466 * 265.00494 * 9 8 6 11 11 C 1.39321 * 121.06238 * 179.97438 * 10 9 8 12 12 C 1.36178 * 120.86915 * 0.02562 * 11 10 9 13 13 C 1.40385 * 119.61502 * 359.97438 * 12 11 10 14 14 C 1.40772 * 121.38809 * 180.02562 * 13 12 11 15 15 C 1.36575 * 118.15260 * 179.97438 * 14 13 12 16 16 C 1.39335 * 119.94104 * 359.97438 * 15 14 13 17 17 N 1.31083 * 121.74930 * 0.02562 * 16 15 14 18 18 C 1.33682 * 121.32017 * 359.69834 * 17 16 15 19 19 C 1.47024 * 108.70570 * 335.86900 * 5 4 2 20 20 C 1.54326 * 107.26637 * 1.05952 * 19 5 4 21 21 H 1.08999 * 110.71537 * 140.55908 * 20 19 5 22 22 N 1.46500 * 110.72191 * 263.82679 * 20 19 5 23 23 C 1.36938 * 120.00536 * 268.52549 * 22 20 19 24 24 H 1.08002 * 119.99518 * 359.97438 * 23 22 20 25 25 C 1.38806 * 120.00413 * 179.97438 * 23 22 20 26 26 N 1.31620 * 119.99848 * 0.02562 * 25 23 22 27 27 Si 1.86801 * 120.00134 * 180.02562 * 25 23 22 28 28 H 1.48493 * 109.47138 * 359.97438 * 27 25 23 29 29 H 1.48499 * 109.47243 * 120.00231 * 27 25 23 30 30 H 1.48505 * 109.46881 * 239.99824 * 27 25 23 31 31 H 1.09001 * 109.47002 * 297.56794 * 1 2 3 32 32 H 1.08993 * 109.46955 * 57.57232 * 1 2 3 33 33 H 1.09000 * 109.47050 * 177.57060 * 1 2 3 34 34 H 1.09003 * 110.36235 * 273.92057 * 4 2 1 35 35 H 1.09000 * 110.36734 * 36.24379 * 4 2 1 36 36 H 1.09004 * 109.47560 * 300.00153 * 8 6 5 37 37 H 1.09011 * 109.47094 * 59.99880 * 8 6 5 38 38 H 1.08000 * 119.47100 * 0.02562 * 10 9 8 39 39 H 1.07996 * 119.56163 * 180.02562 * 11 10 9 40 40 H 1.07997 * 120.19084 * 179.97438 * 12 11 10 41 41 H 1.07999 * 120.92285 * 359.94756 * 14 13 12 42 42 H 1.08004 * 120.02765 * 179.97438 * 15 14 13 43 43 H 1.08005 * 119.12334 * 179.97438 * 16 15 14 44 44 H 1.08996 * 109.88300 * 120.48004 * 19 5 4 45 45 H 1.09001 * 109.88002 * 241.49547 * 19 5 4 46 46 H 0.97006 * 120.00063 * 88.52291 * 22 20 19 47 47 H 0.97004 * 120.00013 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9187 1.0183 0.0000 4 6 2.0853 -0.8063 1.2005 5 7 3.4272 -1.2428 0.7737 6 6 4.4481 -1.5598 1.5944 7 8 4.3018 -1.4964 2.7967 8 6 5.7715 -1.9930 1.0182 9 6 6.7353 -2.2869 2.1389 10 6 7.6032 -1.3277 2.5626 11 6 8.5021 -1.5781 3.5972 12 6 8.5375 -2.7918 4.2137 13 6 7.6567 -3.8047 3.8025 14 6 7.6608 -5.0727 4.4140 15 6 6.7752 -6.0089 3.9620 16 6 5.9009 -5.6950 2.9235 17 7 5.8996 -4.5132 2.3563 18 6 6.7370 -3.5503 2.7548 19 6 3.4675 -1.2744 -0.6957 20 6 2.0861 -0.8083 -1.2020 21 1 2.1922 -0.1707 -2.0796 22 7 1.2268 -1.9579 -1.4956 23 6 1.2056 -2.4928 -2.7560 24 1 1.8222 -2.0669 -3.5337 25 6 0.3918 -3.5824 -3.0340 26 7 -0.3600 -4.1011 -2.0863 27 14 0.3636 -4.3125 -4.7532 28 1 1.2912 -3.5526 -5.6290 29 1 0.7900 -5.7337 -4.6945 30 1 -1.0136 -4.2313 -5.3029 31 1 -0.3633 0.4756 0.9110 32 1 -0.3633 0.5510 -0.8674 33 1 -0.3633 -1.0267 -0.0436 34 1 2.1561 -0.1713 2.0837 35 1 1.4520 -1.6700 1.4029 36 1 5.6294 -2.8904 0.4160 37 1 6.1740 -1.1959 0.3930 38 1 7.5943 -0.3568 2.0898 39 1 9.1797 -0.7992 3.9144 40 1 9.2390 -2.9740 5.0143 41 1 8.3456 -5.2989 5.2179 42 1 6.7526 -6.9918 4.4091 43 1 5.2062 -6.4455 2.5761 44 1 4.2426 -0.6001 -1.0598 45 1 3.6677 -2.2892 -1.0393 46 1 0.6727 -2.3402 -0.7972 47 1 -0.9284 -4.8627 -2.2805 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001054951138.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:48:09 Heat of formation + Delta-G solvation = 35.847836 kcal Electronic energy + Delta-G solvation = -29053.546371 eV Core-core repulsion = 25201.333078 eV Total energy + Delta-G solvation = -3852.213293 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -40.99528 -39.62078 -37.72631 -36.99915 -34.11645 -33.87686 -32.38311 -31.31248 -30.60963 -30.43864 -28.03740 -27.60987 -25.58107 -24.23220 -23.79840 -23.65149 -22.19397 -21.15500 -19.22582 -18.77139 -18.34996 -17.53331 -17.01731 -16.85201 -16.52768 -15.69598 -15.15669 -14.81195 -14.57177 -14.45780 -14.19561 -14.10453 -13.91914 -13.61730 -13.17761 -13.06180 -12.95591 -12.91553 -12.63111 -12.09156 -11.95662 -11.81474 -11.74976 -11.63161 -11.49561 -11.28227 -11.07701 -10.92527 -10.73473 -10.55155 -10.40630 -10.21209 -9.91208 -9.65398 -9.50792 -9.44947 -8.99550 -8.82782 -8.23213 -8.14140 -7.04536 -5.82067 -3.11965 0.31408 0.77399 1.90784 2.85076 3.04958 3.40522 3.45890 3.47019 3.48641 4.07500 4.27162 4.41098 4.54298 4.63840 4.67971 4.79272 4.86343 4.96790 5.04352 5.22707 5.23756 5.24968 5.29418 5.38337 5.42568 5.56668 5.60493 5.68232 5.74225 5.84075 5.90510 5.92890 5.97391 6.00989 6.03072 6.22361 6.28222 6.30753 6.36195 6.39133 6.41815 6.45264 6.58493 6.72630 6.78646 6.80740 6.99731 7.65832 7.93062 7.99913 8.35593 8.57994 9.47577 10.02679 10.37388 11.40061 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.012597 B = 0.003037 C = 0.002682 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2222.268494 B = 9217.817464 C =10435.872717 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.115 4.115 3 H 0.077 0.923 4 C 0.117 3.883 5 N -0.608 5.608 6 C 0.537 3.463 7 O -0.551 6.551 8 C -0.093 4.093 9 C -0.029 4.029 10 C -0.098 4.098 11 C -0.111 4.111 12 C -0.104 4.104 13 C -0.103 4.103 14 C -0.062 4.062 15 C -0.176 4.176 16 C 0.130 3.870 17 N -0.462 5.462 18 C 0.142 3.858 19 C 0.070 3.930 20 C 0.173 3.827 21 H 0.072 0.928 22 N -0.711 5.711 23 C -0.245 4.245 24 H 0.073 0.927 25 C -0.009 4.009 26 N -0.928 5.928 27 Si 0.906 3.094 28 H -0.280 1.280 29 H -0.292 1.292 30 H -0.292 1.292 31 H 0.043 0.957 32 H 0.057 0.943 33 H 0.073 0.927 34 H 0.066 0.934 35 H 0.067 0.933 36 H 0.113 0.887 37 H 0.098 0.902 38 H 0.128 0.872 39 H 0.127 0.873 40 H 0.127 0.873 41 H 0.136 0.864 42 H 0.136 0.864 43 H 0.159 0.841 44 H 0.054 0.946 45 H 0.077 0.923 46 H 0.387 0.613 47 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.207 3.836 11.263 20.920 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.136 4.136 3 H 0.095 0.905 4 C -0.006 4.006 5 N -0.341 5.341 6 C 0.326 3.674 7 O -0.429 6.429 8 C -0.133 4.133 9 C -0.030 4.030 10 C -0.118 4.118 11 C -0.129 4.129 12 C -0.123 4.123 13 C -0.105 4.105 14 C -0.088 4.088 15 C -0.196 4.196 16 C -0.043 4.043 17 N -0.169 5.169 18 C 0.021 3.979 19 C -0.056 4.056 20 C 0.060 3.940 21 H 0.090 0.910 22 N -0.352 5.352 23 C -0.376 4.376 24 H 0.091 0.909 25 C -0.205 4.205 26 N -0.576 5.576 27 Si 0.737 3.263 28 H -0.205 1.205 29 H -0.219 1.219 30 H -0.219 1.219 31 H 0.062 0.938 32 H 0.076 0.924 33 H 0.092 0.908 34 H 0.085 0.915 35 H 0.085 0.915 36 H 0.131 0.869 37 H 0.116 0.884 38 H 0.146 0.854 39 H 0.145 0.855 40 H 0.145 0.855 41 H 0.154 0.846 42 H 0.154 0.846 43 H 0.176 0.824 44 H 0.072 0.928 45 H 0.096 0.904 46 H 0.223 0.777 47 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 16.626 4.074 11.034 20.366 hybrid contribution 0.367 -0.968 -0.013 1.035 sum 16.993 3.107 11.022 20.491 Atomic orbital electron populations 1.21561 0.93445 1.03520 1.00435 1.22642 0.96947 0.98386 0.95583 0.90504 1.22209 0.83044 0.98207 0.97132 1.48404 1.11862 1.66085 1.07751 1.19896 0.84555 0.76871 0.86101 1.90666 1.83428 1.54137 1.14708 1.20521 0.91876 1.04110 0.96781 1.19030 0.95854 0.91684 0.96476 1.20755 0.95373 0.98647 0.97000 1.20843 0.98766 0.97115 0.96128 1.20913 0.98408 0.93028 0.99910 1.18801 0.98286 0.95410 0.97970 1.21414 0.97504 0.91954 0.97929 1.21893 0.97651 1.00895 0.99151 1.23021 0.95845 0.93530 0.91855 1.68047 1.20221 1.00781 1.27873 1.18650 0.92290 0.93507 0.93499 1.23296 1.01412 1.02162 0.78710 1.21180 0.88257 0.89842 0.94683 0.90983 1.42458 1.48862 1.33009 1.10842 1.19276 1.20652 1.09937 0.87731 0.90948 1.24747 0.99368 0.98797 0.97627 1.69671 1.30118 1.26118 1.31690 0.86138 0.77229 0.78907 0.83992 1.20507 1.21878 1.21894 0.93800 0.92380 0.90825 0.91529 0.91455 0.86933 0.88375 0.85404 0.85539 0.85465 0.84622 0.84642 0.82368 0.92819 0.90449 0.77741 0.93459 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.14 8.98 37.16 0.33 -1.80 16 2 C -0.12 -1.85 3.51 -88.47 -0.31 -2.16 16 3 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 4 C 0.12 2.03 6.33 -2.53 -0.02 2.02 16 5 N -0.61 -10.74 3.33 -170.52 -0.57 -11.30 16 6 C 0.54 9.71 7.84 -10.99 -0.09 9.63 16 7 O -0.55 -11.67 16.29 5.55 0.09 -11.58 16 8 C -0.09 -1.38 4.75 -29.04 -0.14 -1.52 16 9 C -0.03 -0.43 4.38 -104.51 -0.46 -0.89 16 10 C -0.10 -1.17 9.57 -39.94 -0.38 -1.55 16 11 C -0.11 -1.13 9.96 -39.92 -0.40 -1.53 16 12 C -0.10 -1.08 9.78 -39.51 -0.39 -1.47 16 13 C -0.10 -1.31 5.74 -106.80 -0.61 -1.93 16 14 C -0.06 -0.64 9.90 -39.22 -0.39 -1.03 16 15 C -0.18 -1.80 10.03 -39.77 -0.40 -2.20 16 16 C 0.13 1.68 11.15 -17.46 -0.19 1.49 16 17 N -0.46 -7.49 9.51 -10.97 -0.10 -7.60 16 18 C 0.14 2.20 6.58 -84.86 -0.56 1.64 16 19 C 0.07 1.20 6.23 -3.06 -0.02 1.18 16 20 C 0.17 3.18 3.39 -66.10 -0.22 2.96 16 21 H 0.07 1.29 8.09 -51.93 -0.42 0.87 16 22 N -0.71 -16.61 4.46 -51.65 -0.23 -16.84 16 23 C -0.25 -6.40 9.96 -15.06 -0.15 -6.55 16 24 H 0.07 1.82 7.83 -52.49 -0.41 1.41 16 25 C -0.01 -0.24 5.50 -17.43 -0.10 -0.34 16 26 N -0.93 -27.20 13.06 55.49 0.72 -26.47 16 27 Si 0.91 21.72 29.55 -169.99 -5.02 16.69 16 28 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 29 H -0.29 -7.11 7.11 56.52 0.40 -6.70 16 30 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 31 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 33 H 0.07 1.41 6.27 -51.93 -0.33 1.08 16 34 H 0.07 1.12 8.04 -51.93 -0.42 0.71 16 35 H 0.07 1.30 8.04 -51.93 -0.42 0.88 16 36 H 0.11 1.75 7.72 -51.93 -0.40 1.35 16 37 H 0.10 1.15 8.04 -51.92 -0.42 0.73 16 38 H 0.13 1.24 8.04 -52.49 -0.42 0.82 16 39 H 0.13 0.90 8.06 -52.49 -0.42 0.48 16 40 H 0.13 0.92 8.06 -52.49 -0.42 0.50 16 41 H 0.14 0.94 8.06 -52.49 -0.42 0.51 16 42 H 0.14 0.94 8.06 -52.48 -0.42 0.51 16 43 H 0.16 1.68 8.06 -52.48 -0.42 1.26 16 44 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 45 H 0.08 1.49 8.05 -51.93 -0.42 1.07 16 46 H 0.39 9.81 6.25 -40.82 -0.25 9.55 16 47 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 LS Contribution 388.60 15.07 5.86 5.86 Total: -1.00 -33.76 388.60 -10.58 -44.34 By element: Atomic # 1 Polarization: 17.80 SS G_CDS: -6.84 Total: 10.95 kcal Atomic # 6 Polarization: 0.43 SS G_CDS: -4.48 Total: -4.05 kcal Atomic # 7 Polarization: -62.03 SS G_CDS: -0.18 Total: -62.21 kcal Atomic # 8 Polarization: -11.67 SS G_CDS: 0.09 Total: -11.58 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -5.02 Total: 16.69 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -33.76 -10.58 -44.34 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054951138.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.187 kcal (2) G-P(sol) polarization free energy of solvation -33.756 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.430 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.583 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.339 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.848 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds