Wall clock time and date at job start Tue Mar 31 2020 22:48:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08992 * 110.88846 * 2 1 4 4 C 1.54909 * 111.00534 * 123.88579 * 2 1 3 5 5 N 1.47418 * 104.83184 * 155.08374 * 4 2 1 6 6 C 1.34776 * 125.65074 * 155.83634 * 5 4 2 7 7 O 1.21288 * 119.99824 * 359.97438 * 6 5 4 8 8 C 1.50695 * 120.00406 * 179.97438 * 6 5 4 9 9 C 1.50704 * 109.47528 * 179.97438 * 8 6 5 10 10 C 1.36111 * 120.12466 * 265.00494 * 9 8 6 11 11 C 1.39321 * 121.06238 * 179.97438 * 10 9 8 12 12 C 1.36178 * 120.86915 * 0.02562 * 11 10 9 13 13 C 1.40385 * 119.61502 * 359.97438 * 12 11 10 14 14 C 1.40772 * 121.38809 * 180.02562 * 13 12 11 15 15 C 1.36575 * 118.15260 * 179.97438 * 14 13 12 16 16 C 1.39335 * 119.94104 * 359.97438 * 15 14 13 17 17 N 1.31083 * 121.74930 * 0.02562 * 16 15 14 18 18 C 1.33682 * 121.32017 * 359.69834 * 17 16 15 19 19 C 1.47024 * 108.70570 * 335.86900 * 5 4 2 20 20 C 1.54326 * 107.26637 * 1.05952 * 19 5 4 21 21 H 1.08999 * 110.71537 * 140.55908 * 20 19 5 22 22 N 1.46500 * 110.72191 * 263.82679 * 20 19 5 23 23 C 1.36938 * 120.00536 * 268.52549 * 22 20 19 24 24 H 1.08002 * 119.99518 * 359.97438 * 23 22 20 25 25 C 1.38806 * 120.00413 * 179.97438 * 23 22 20 26 26 N 1.31620 * 119.99848 * 0.02562 * 25 23 22 27 27 Si 1.86801 * 120.00134 * 180.02562 * 25 23 22 28 28 H 1.48493 * 109.47138 * 359.97438 * 27 25 23 29 29 H 1.48499 * 109.47243 * 120.00231 * 27 25 23 30 30 H 1.48505 * 109.46881 * 239.99824 * 27 25 23 31 31 H 1.09001 * 109.47002 * 297.56794 * 1 2 3 32 32 H 1.08993 * 109.46955 * 57.57232 * 1 2 3 33 33 H 1.09000 * 109.47050 * 177.57060 * 1 2 3 34 34 H 1.09003 * 110.36235 * 273.92057 * 4 2 1 35 35 H 1.09000 * 110.36734 * 36.24379 * 4 2 1 36 36 H 1.09004 * 109.47560 * 300.00153 * 8 6 5 37 37 H 1.09011 * 109.47094 * 59.99880 * 8 6 5 38 38 H 1.08000 * 119.47100 * 0.02562 * 10 9 8 39 39 H 1.07996 * 119.56163 * 180.02562 * 11 10 9 40 40 H 1.07997 * 120.19084 * 179.97438 * 12 11 10 41 41 H 1.07999 * 120.92285 * 359.94756 * 14 13 12 42 42 H 1.08004 * 120.02765 * 179.97438 * 15 14 13 43 43 H 1.08005 * 119.12334 * 179.97438 * 16 15 14 44 44 H 1.08996 * 109.88300 * 120.48004 * 19 5 4 45 45 H 1.09001 * 109.88002 * 241.49547 * 19 5 4 46 46 H 0.97006 * 120.00063 * 88.52291 * 22 20 19 47 47 H 0.97004 * 120.00013 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9187 1.0183 0.0000 4 6 2.0853 -0.8063 1.2005 5 7 3.4272 -1.2428 0.7737 6 6 4.4481 -1.5598 1.5944 7 8 4.3018 -1.4964 2.7967 8 6 5.7715 -1.9930 1.0182 9 6 6.7353 -2.2869 2.1389 10 6 7.6032 -1.3277 2.5626 11 6 8.5021 -1.5781 3.5972 12 6 8.5375 -2.7918 4.2137 13 6 7.6567 -3.8047 3.8025 14 6 7.6608 -5.0727 4.4140 15 6 6.7752 -6.0089 3.9620 16 6 5.9009 -5.6950 2.9235 17 7 5.8996 -4.5132 2.3563 18 6 6.7370 -3.5503 2.7548 19 6 3.4675 -1.2744 -0.6957 20 6 2.0861 -0.8083 -1.2020 21 1 2.1922 -0.1707 -2.0796 22 7 1.2268 -1.9579 -1.4956 23 6 1.2056 -2.4928 -2.7560 24 1 1.8222 -2.0669 -3.5337 25 6 0.3918 -3.5824 -3.0340 26 7 -0.3600 -4.1011 -2.0863 27 14 0.3636 -4.3125 -4.7532 28 1 1.2912 -3.5526 -5.6290 29 1 0.7900 -5.7337 -4.6945 30 1 -1.0136 -4.2313 -5.3029 31 1 -0.3633 0.4756 0.9110 32 1 -0.3633 0.5510 -0.8674 33 1 -0.3633 -1.0267 -0.0436 34 1 2.1561 -0.1713 2.0837 35 1 1.4520 -1.6700 1.4029 36 1 5.6294 -2.8904 0.4160 37 1 6.1740 -1.1959 0.3930 38 1 7.5943 -0.3568 2.0898 39 1 9.1797 -0.7992 3.9144 40 1 9.2390 -2.9740 5.0143 41 1 8.3456 -5.2989 5.2179 42 1 6.7526 -6.9918 4.4091 43 1 5.2062 -6.4455 2.5761 44 1 4.2426 -0.6001 -1.0598 45 1 3.6677 -2.2892 -1.0393 46 1 0.6727 -2.3402 -0.7972 47 1 -0.9284 -4.8627 -2.2805 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001054951138.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:48:07 Heat of formation + Delta-G solvation = 15.438991 kcal Electronic energy + Delta-G solvation = -29054.431365 eV Core-core repulsion = 25201.333078 eV Total energy + Delta-G solvation = -3853.098287 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -41.92496 -40.99715 -39.09255 -37.98235 -35.68398 -35.06168 -33.92050 -32.43231 -32.07778 -31.46278 -29.36433 -29.02335 -26.85240 -25.74460 -25.11203 -24.51787 -23.61486 -22.16716 -20.69928 -20.11052 -19.40449 -19.18904 -18.02727 -17.90990 -17.74799 -17.14125 -16.54656 -16.25342 -15.91381 -15.61903 -15.40144 -15.20388 -15.08443 -14.87956 -14.59338 -14.43245 -14.15904 -13.91905 -13.81886 -13.50042 -13.35419 -13.04642 -12.93000 -12.87049 -12.79768 -12.66247 -12.55748 -12.31571 -12.14982 -12.06280 -11.96124 -11.49189 -11.44914 -11.36759 -11.03246 -10.84846 -10.39575 -9.70426 -9.61875 -9.12319 -8.99813 -7.90997 -5.19367 -0.53581 -0.10369 1.02327 1.49662 1.50362 1.59745 1.63895 1.96890 2.17085 2.58501 3.13320 3.39067 3.40949 3.50942 3.54927 3.78865 3.87533 3.91200 3.93602 3.99185 4.05792 4.09286 4.12951 4.27985 4.34329 4.42831 4.44120 4.55469 4.59798 4.63177 4.64793 4.72251 4.87282 4.88471 4.97950 5.01326 5.07287 5.13455 5.14834 5.21943 5.29471 5.35788 5.46219 5.47537 5.55730 5.61535 5.64137 5.96754 6.30177 6.58673 7.00889 7.16791 7.37294 8.11699 8.34304 9.32630 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.012597 B = 0.003037 C = 0.002682 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2222.268494 B = 9217.817464 C =10435.872717 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.098 4.098 3 H 0.112 0.888 4 C 0.116 3.884 5 N -0.611 5.611 6 C 0.533 3.467 7 O -0.586 6.586 8 C -0.082 4.082 9 C -0.070 4.070 10 C -0.094 4.094 11 C -0.117 4.117 12 C -0.098 4.098 13 C -0.126 4.126 14 C -0.056 4.056 15 C -0.178 4.178 16 C 0.111 3.889 17 N -0.514 5.514 18 C 0.108 3.892 19 C 0.080 3.920 20 C 0.163 3.837 21 H 0.089 0.911 22 N -0.723 5.723 23 C -0.232 4.232 24 H 0.085 0.915 25 C -0.076 4.076 26 N -0.970 5.970 27 Si 0.968 3.032 28 H -0.261 1.261 29 H -0.301 1.301 30 H -0.297 1.297 31 H 0.067 0.933 32 H 0.061 0.939 33 H 0.036 0.964 34 H 0.073 0.927 35 H 0.036 0.964 36 H 0.095 0.905 37 H 0.129 0.871 38 H 0.149 0.851 39 H 0.163 0.837 40 H 0.165 0.835 41 H 0.177 0.823 42 H 0.171 0.829 43 H 0.166 0.834 44 H 0.094 0.906 45 H 0.050 0.950 46 H 0.373 0.627 47 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.230 5.661 11.900 24.143 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.118 4.118 3 H 0.130 0.870 4 C -0.007 4.007 5 N -0.343 5.343 6 C 0.323 3.677 7 O -0.467 6.467 8 C -0.121 4.121 9 C -0.071 4.071 10 C -0.113 4.113 11 C -0.134 4.134 12 C -0.116 4.116 13 C -0.128 4.128 14 C -0.082 4.082 15 C -0.197 4.197 16 C -0.061 4.061 17 N -0.222 5.222 18 C -0.013 4.013 19 C -0.045 4.045 20 C 0.053 3.947 21 H 0.106 0.894 22 N -0.362 5.362 23 C -0.364 4.364 24 H 0.103 0.897 25 C -0.268 4.268 26 N -0.621 5.621 27 Si 0.798 3.202 28 H -0.185 1.185 29 H -0.229 1.229 30 H -0.225 1.225 31 H 0.086 0.914 32 H 0.080 0.920 33 H 0.055 0.945 34 H 0.092 0.908 35 H 0.055 0.945 36 H 0.113 0.887 37 H 0.147 0.853 38 H 0.166 0.834 39 H 0.181 0.819 40 H 0.182 0.818 41 H 0.194 0.806 42 H 0.188 0.812 43 H 0.183 0.817 44 H 0.112 0.888 45 H 0.068 0.932 46 H 0.206 0.794 47 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 19.693 5.946 11.645 23.639 hybrid contribution -0.499 -1.494 -0.103 1.579 sum 19.194 4.452 11.542 22.835 Atomic orbital electron populations 1.21486 0.93637 1.01454 1.01831 1.22601 0.96656 0.99332 0.93214 0.86992 1.22175 0.82858 0.97384 0.98275 1.48525 1.11830 1.65903 1.08043 1.20541 0.85561 0.75873 0.85698 1.90628 1.84202 1.55607 1.16304 1.20446 0.90383 1.04062 0.97234 1.19189 0.97497 0.92660 0.97756 1.21130 0.94485 0.98721 0.96993 1.21281 0.98713 0.98123 0.95298 1.21388 0.97790 0.92312 1.00102 1.19211 0.98502 0.97314 0.97789 1.21918 0.97488 0.90762 0.98044 1.22203 0.96740 1.02572 0.98184 1.23412 0.96786 0.93087 0.92823 1.67974 1.22085 1.02244 1.29944 1.19033 0.93386 0.93843 0.95023 1.23118 1.01557 1.01524 0.78306 1.21478 0.88150 0.88731 0.96379 0.89363 1.42637 1.49597 1.34322 1.09691 1.19710 1.18915 1.08940 0.88855 0.89739 1.25508 1.00210 1.00117 1.00946 1.69838 1.31780 1.26886 1.33632 0.85144 0.77005 0.77625 0.80420 1.18497 1.22899 1.22499 0.91430 0.91988 0.94477 0.90822 0.94530 0.88673 0.85317 0.83368 0.81946 0.81780 0.80598 0.81165 0.81682 0.88782 0.93181 0.79354 0.94348 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.02 8.98 71.98 0.65 -3.38 16 2 C -0.10 -3.01 3.51 -9.40 -0.03 -3.05 16 3 H 0.11 2.75 8.14 -2.39 -0.02 2.73 16 4 C 0.12 4.07 6.33 86.86 0.55 4.62 16 5 N -0.61 -21.63 3.33 -811.80 -2.70 -24.33 16 6 C 0.53 19.60 7.84 87.66 0.69 20.29 16 7 O -0.59 -25.55 16.29 -3.06 -0.05 -25.60 16 8 C -0.08 -2.45 4.75 29.10 0.14 -2.31 16 9 C -0.07 -2.06 4.38 -19.79 -0.09 -2.14 16 10 C -0.09 -2.09 9.57 22.04 0.21 -1.88 16 11 C -0.12 -2.03 9.96 22.05 0.22 -1.81 16 12 C -0.10 -1.75 9.78 22.31 0.22 -1.53 16 13 C -0.13 -3.08 5.74 -21.28 -0.12 -3.20 16 14 C -0.06 -1.05 9.90 22.50 0.22 -0.82 16 15 C -0.18 -3.45 10.03 22.14 0.22 -3.23 16 16 C 0.11 3.00 11.15 85.07 0.95 3.95 16 17 N -0.51 -17.71 9.51 -188.63 -1.79 -19.51 16 18 C 0.11 3.43 6.58 40.29 0.27 3.69 16 19 C 0.08 2.67 6.23 86.73 0.54 3.21 16 20 C 0.16 5.83 3.39 46.18 0.16 5.99 16 21 H 0.09 2.92 8.09 -2.39 -0.02 2.90 16 22 N -0.72 -34.37 4.46 -317.33 -1.42 -35.79 16 23 C -0.23 -12.20 9.96 84.03 0.84 -11.36 16 24 H 0.08 4.15 7.83 -2.91 -0.02 4.13 16 25 C -0.08 -4.25 5.50 84.86 0.47 -3.78 16 26 N -0.97 -59.19 13.06 21.65 0.28 -58.91 16 27 Si 0.97 45.46 29.55 68.60 2.03 47.49 16 28 H -0.26 -11.27 7.11 99.48 0.71 -10.57 16 29 H -0.30 -14.47 7.11 99.48 0.71 -13.76 16 30 H -0.30 -14.10 7.11 99.48 0.71 -13.40 16 31 H 0.07 1.81 8.14 -2.39 -0.02 1.79 16 32 H 0.06 1.91 8.14 -2.39 -0.02 1.89 16 33 H 0.04 1.46 6.27 -2.39 -0.01 1.44 16 34 H 0.07 2.48 8.04 -2.39 -0.02 2.46 16 35 H 0.04 1.50 8.04 -2.39 -0.02 1.48 16 36 H 0.10 3.14 7.72 -2.38 -0.02 3.13 16 37 H 0.13 2.85 8.04 -2.38 -0.02 2.83 16 38 H 0.15 2.50 8.04 -2.91 -0.02 2.48 16 39 H 0.16 1.58 8.06 -2.91 -0.02 1.56 16 40 H 0.16 1.61 8.06 -2.91 -0.02 1.59 16 41 H 0.18 1.69 8.06 -2.91 -0.02 1.67 16 42 H 0.17 1.95 8.06 -2.91 -0.02 1.93 16 43 H 0.17 3.83 8.06 -2.91 -0.02 3.81 16 44 H 0.09 2.40 8.14 -2.39 -0.02 2.38 16 45 H 0.05 1.96 8.05 -2.39 -0.02 1.94 16 46 H 0.37 19.80 6.25 -92.70 -0.58 19.22 16 47 H 0.25 14.79 8.31 -92.71 -0.77 14.02 16 Total: -1.00 -78.55 388.60 2.84 -75.71 By element: Atomic # 1 Polarization: 37.26 SS G_CDS: 0.40 Total: 37.66 kcal Atomic # 6 Polarization: -2.82 SS G_CDS: 6.09 Total: 3.27 kcal Atomic # 7 Polarization: -132.90 SS G_CDS: -5.63 Total: -138.52 kcal Atomic # 8 Polarization: -25.55 SS G_CDS: -0.05 Total: -25.60 kcal Atomic # 14 Polarization: 45.46 SS G_CDS: 2.03 Total: 47.49 kcal Total: -78.55 2.84 -75.71 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054951138.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.147 kcal (2) G-P(sol) polarization free energy of solvation -78.546 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.601 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.838 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.708 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.439 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds