Wall clock time and date at job start Tue Mar 31 2020 22:14:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09001 * 109.58519 * 2 1 4 4 C 1.53191 * 109.58469 * 120.27770 * 2 1 3 5 5 C 1.53041 * 109.31394 * 174.56870 * 4 2 1 6 6 C 1.53040 * 109.53557 * 298.63509 * 5 4 2 7 7 H 1.09002 * 109.49919 * 181.30928 * 6 5 4 8 8 N 1.46500 * 109.49829 * 301.41173 * 6 5 4 9 9 C 1.34777 * 120.00079 * 204.99629 * 8 6 5 10 10 O 1.21613 * 119.99665 * 0.02562 * 9 8 6 11 11 C 1.47427 * 120.00047 * 180.02562 * 9 8 6 12 12 C 1.38744 * 120.33153 * 0.02562 * 11 9 8 13 13 C 1.38878 * 120.72025 * 179.97438 * 12 11 9 14 14 C 1.36351 * 121.06101 * 359.96059 * 13 12 11 15 15 C 1.40443 * 120.08409 * 0.02562 * 14 13 12 16 16 C 1.40805 * 121.26368 * 180.02562 * 15 14 13 17 17 C 1.36634 * 118.14942 * 179.97438 * 16 15 14 18 18 C 1.39234 * 119.91413 * 359.97438 * 17 16 15 19 19 N 1.31236 * 121.69068 * 359.97438 * 18 17 16 20 20 C 1.33346 * 121.35246 * 359.78876 * 19 18 17 21 21 C 1.53197 * 109.31384 * 61.36343 * 6 5 4 22 22 N 1.46921 * 109.70759 * 239.63920 * 2 1 3 23 23 C 1.36942 * 120.62940 * 6.51290 * 22 2 1 24 24 H 1.08001 * 119.99595 * 330.20678 * 23 22 2 25 25 C 1.38810 * 120.00016 * 150.20036 * 23 22 2 26 26 N 1.31620 * 119.99942 * 344.47828 * 25 23 22 27 27 Si 1.86795 * 119.99872 * 164.47425 * 25 23 22 28 28 H 1.48502 * 109.47291 * 0.02562 * 27 25 23 29 29 H 1.48507 * 109.46879 * 120.00159 * 27 25 23 30 30 H 1.48499 * 109.47336 * 240.00094 * 27 25 23 31 31 H 1.09000 * 109.47586 * 300.00585 * 1 2 3 32 32 H 1.09001 * 109.46932 * 60.00680 * 1 2 3 33 33 H 1.09000 * 109.46812 * 180.02562 * 1 2 3 34 34 H 1.09000 * 109.49925 * 294.51830 * 4 2 1 35 35 H 1.08999 * 109.49936 * 54.61865 * 4 2 1 36 36 H 1.09006 * 109.45921 * 58.65326 * 5 4 2 37 37 H 1.08998 * 109.46555 * 178.61825 * 5 4 2 38 38 H 0.96994 * 119.99858 * 25.00696 * 8 6 5 39 39 H 1.07996 * 119.64048 * 359.97438 * 12 11 9 40 40 H 1.07997 * 119.46809 * 179.97438 * 13 12 11 41 41 H 1.07996 * 119.95401 * 180.02562 * 14 13 12 42 42 H 1.07993 * 120.92632 * 359.96603 * 16 15 14 43 43 H 1.08001 * 120.04255 * 180.02562 * 17 16 15 44 44 H 1.07996 * 119.15715 * 180.02562 * 18 17 16 45 45 H 1.09011 * 109.58304 * 65.15280 * 21 6 5 46 46 H 1.08994 * 109.58664 * 185.43222 * 21 6 5 47 47 H 0.97005 * 119.99905 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8954 1.0270 0.0000 4 6 2.0435 -0.7277 1.2464 5 6 3.5678 -0.8432 1.1731 6 6 3.9604 -1.6607 -0.0596 7 1 5.0449 -1.7624 -0.0985 8 7 3.3466 -2.9887 0.0186 9 6 3.9060 -4.0289 -0.6306 10 8 4.9206 -3.8652 -1.2810 11 6 3.2881 -5.3651 -0.5524 12 6 2.1304 -5.5595 0.1871 13 6 1.5412 -6.8146 0.2659 14 6 2.0815 -7.8872 -0.3797 15 6 3.2528 -7.7348 -1.1396 16 6 3.8316 -8.8252 -1.8167 17 6 4.9710 -8.6049 -2.5379 18 6 5.5255 -7.3286 -2.5875 19 7 4.9813 -6.3155 -1.9553 20 6 3.8668 -6.4629 -1.2382 21 6 3.4686 -0.9436 -1.3209 22 7 2.0254 -0.6991 -1.1935 23 6 1.1585 -1.1153 -2.1684 24 1 0.1448 -1.3840 -1.9107 25 6 1.5828 -1.1917 -3.4879 26 7 2.6926 -0.5887 -3.8583 27 14 0.5787 -2.1503 -4.7378 28 1 -0.6163 -2.7296 -4.0733 29 1 0.1455 -1.2396 -5.8280 30 1 1.4082 -3.2431 -5.3060 31 1 -0.3634 0.5139 0.8899 32 1 -0.3633 0.5137 -0.8901 33 1 -0.3633 -1.0277 0.0005 34 1 1.7637 -0.1653 2.1372 35 1 1.6049 -1.7245 1.2923 36 1 4.0045 0.1531 1.1023 37 1 3.9381 -1.3389 2.0705 38 1 2.5376 -3.1192 0.5374 39 1 1.6825 -4.7257 0.7071 40 1 0.6404 -6.9431 0.8476 41 1 1.6082 -8.8552 -0.3065 42 1 3.3875 -9.8083 -1.7672 43 1 5.4404 -9.4194 -3.0695 44 1 6.4260 -7.1682 -3.1616 45 1 3.9921 0.0064 -1.4286 46 1 3.6600 -1.5674 -2.1940 47 1 2.9889 -0.6418 -4.7805 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001071653947.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:14:16 Heat of formation + Delta-G solvation = 51.504956 kcal Electronic energy + Delta-G solvation = -30339.441215 eV Core-core repulsion = 26487.906866 eV Total energy + Delta-G solvation = -3851.534349 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -40.88135 -39.19251 -37.48640 -36.78457 -34.00464 -33.36507 -32.66932 -31.12159 -30.46866 -29.91040 -29.47985 -26.18525 -24.97889 -24.52804 -23.45705 -23.15395 -22.11335 -20.60114 -20.15224 -18.76562 -18.16724 -17.67414 -16.78935 -16.25663 -15.92174 -15.28899 -14.94038 -14.69547 -14.51204 -14.05844 -14.04284 -13.86447 -13.65521 -13.57658 -13.23434 -13.01848 -12.83525 -12.71083 -12.42932 -12.10135 -11.86746 -11.67626 -11.39791 -11.14104 -11.12503 -10.90622 -10.82102 -10.67316 -10.46458 -10.33180 -10.26402 -9.91263 -9.60076 -9.44104 -9.37970 -8.84419 -8.81613 -8.38461 -8.32983 -8.12422 -6.52662 -5.68774 -3.12984 0.20148 0.81445 1.81315 2.81481 3.41977 3.48455 3.51343 3.63779 3.79319 4.30386 4.35927 4.54951 4.55738 4.69214 4.79940 4.84146 5.03568 5.10896 5.24295 5.36495 5.41566 5.43444 5.51011 5.56237 5.65442 5.69153 5.85795 5.90019 6.00297 6.06468 6.15962 6.17702 6.20559 6.28857 6.36920 6.38877 6.44947 6.49150 6.58927 6.65796 6.76535 6.77465 6.98263 7.09272 7.18032 7.49261 7.78267 7.90370 8.08689 8.26227 8.56029 8.99129 9.30035 9.94768 10.51007 11.39141 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.010988 B = 0.004475 C = 0.003988 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2547.565909 B = 6254.820381 C = 7018.855670 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.165 3.835 3 H 0.024 0.976 4 C -0.130 4.130 5 C -0.118 4.118 6 C 0.121 3.879 7 H 0.076 0.924 8 N -0.700 5.700 9 C 0.550 3.450 10 O -0.504 6.504 11 C -0.091 4.091 12 C -0.067 4.067 13 C -0.121 4.121 14 C -0.082 4.082 15 C -0.111 4.111 16 C -0.063 4.063 17 C -0.176 4.176 18 C 0.126 3.874 19 N -0.429 5.429 20 C 0.160 3.840 21 C 0.163 3.837 22 N -0.582 5.582 23 C -0.250 4.250 24 H 0.067 0.933 25 C 0.008 3.992 26 N -0.897 5.897 27 Si 0.892 3.108 28 H -0.279 1.279 29 H -0.291 1.291 30 H -0.290 1.290 31 H 0.036 0.964 32 H 0.060 0.940 33 H 0.051 0.949 34 H 0.052 0.948 35 H 0.053 0.947 36 H 0.070 0.930 37 H 0.051 0.949 38 H 0.391 0.609 39 H 0.134 0.866 40 H 0.132 0.868 41 H 0.131 0.869 42 H 0.137 0.863 43 H 0.135 0.865 44 H 0.158 0.842 45 H 0.024 0.976 46 H 0.095 0.905 47 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.143 -14.285 10.756 17.882 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.059 3.941 3 H 0.042 0.958 4 C -0.169 4.169 5 C -0.157 4.157 6 C 0.015 3.985 7 H 0.094 0.906 8 N -0.352 5.352 9 C 0.335 3.665 10 O -0.379 6.379 11 C -0.095 4.095 12 C -0.088 4.088 13 C -0.139 4.139 14 C -0.101 4.101 15 C -0.113 4.113 16 C -0.089 4.089 17 C -0.196 4.196 18 C -0.047 4.047 19 N -0.135 5.135 20 C 0.037 3.963 21 C 0.036 3.964 22 N -0.305 5.305 23 C -0.379 4.379 24 H 0.085 0.915 25 C -0.191 4.191 26 N -0.540 5.540 27 Si 0.722 3.278 28 H -0.204 1.204 29 H -0.218 1.218 30 H -0.217 1.217 31 H 0.055 0.945 32 H 0.079 0.921 33 H 0.070 0.930 34 H 0.071 0.929 35 H 0.072 0.928 36 H 0.089 0.911 37 H 0.069 0.931 38 H 0.226 0.774 39 H 0.152 0.848 40 H 0.150 0.850 41 H 0.149 0.851 42 H 0.155 0.845 43 H 0.153 0.847 44 H 0.176 0.824 45 H 0.042 0.958 46 H 0.114 0.886 47 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 0.983 -13.208 10.124 16.670 hybrid contribution -1.349 -1.433 -0.594 2.056 sum -0.366 -14.641 9.529 17.473 Atomic orbital electron populations 1.21788 0.96182 1.01152 1.00133 1.20449 0.92804 0.93645 0.87233 0.95828 1.22067 0.95231 1.00540 0.99094 1.21692 0.96925 1.00163 0.96874 1.21744 0.97023 0.81660 0.98064 0.90621 1.45774 1.29294 1.08483 1.51654 1.17757 0.84778 0.83468 0.80510 1.90829 1.23852 1.84232 1.38992 1.20139 0.96418 0.93905 0.99073 1.21464 0.93403 0.97728 0.96183 1.20825 1.00409 0.92390 1.00262 1.21079 0.94141 0.99366 0.95551 1.18828 0.97527 0.94334 1.00587 1.21406 0.94934 0.98049 0.94533 1.21938 0.97524 0.99092 1.01076 1.23183 0.98661 0.88029 0.94816 1.68357 1.08112 1.31909 1.05159 1.18663 0.91863 0.90948 0.94815 1.21163 0.83660 0.96982 0.94581 1.44029 1.02691 1.64756 1.19046 1.19073 0.95028 1.37820 0.86007 0.91542 1.25042 0.97704 0.99386 0.96980 1.69993 1.23905 1.43526 1.16622 0.86388 0.79594 0.79885 0.81910 1.20363 1.21781 1.21699 0.94474 0.92068 0.93025 0.92910 0.92849 0.91128 0.93071 0.77400 0.84806 0.84964 0.85129 0.84504 0.84671 0.82443 0.95774 0.88648 0.93760 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.44 7.95 37.16 0.30 -2.15 16 2 C 0.17 3.27 3.49 -67.60 -0.24 3.04 16 3 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 4 C -0.13 -2.07 5.21 -26.61 -0.14 -2.21 16 5 C -0.12 -1.91 5.59 -26.69 -0.15 -2.05 16 6 C 0.12 2.39 2.81 -67.81 -0.19 2.20 16 7 H 0.08 1.55 7.58 -51.93 -0.39 1.16 16 8 N -0.70 -13.16 4.87 -54.76 -0.27 -13.43 16 9 C 0.55 11.47 7.73 -12.52 -0.10 11.37 16 10 O -0.50 -12.39 14.85 5.27 0.08 -12.31 16 11 C -0.09 -1.64 5.90 -104.62 -0.62 -2.25 16 12 C -0.07 -0.93 9.52 -39.16 -0.37 -1.30 16 13 C -0.12 -1.34 9.93 -40.02 -0.40 -1.74 16 14 C -0.08 -0.91 9.75 -39.43 -0.38 -1.29 16 15 C -0.11 -1.51 5.74 -106.82 -0.61 -2.13 16 16 C -0.06 -0.69 9.90 -39.19 -0.39 -1.07 16 17 C -0.18 -1.91 10.03 -39.79 -0.40 -2.31 16 18 C 0.13 1.77 11.15 -17.44 -0.19 1.58 16 19 N -0.43 -8.06 8.44 -10.76 -0.09 -8.15 16 20 C 0.16 2.84 6.61 -84.58 -0.56 2.28 16 21 C 0.16 3.98 4.88 -3.71 -0.02 3.96 16 22 N -0.58 -14.00 2.90 -164.78 -0.48 -14.48 16 23 C -0.25 -6.68 8.58 -15.06 -0.13 -6.81 16 24 H 0.07 1.74 6.25 -52.49 -0.33 1.41 16 25 C 0.01 0.23 4.94 -17.43 -0.09 0.14 16 26 N -0.90 -27.00 11.23 55.49 0.62 -26.38 16 27 Si 0.89 22.67 29.58 -169.99 -5.03 17.64 16 28 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 29 H -0.29 -7.39 7.11 56.52 0.40 -6.99 16 30 H -0.29 -7.66 7.11 56.52 0.40 -7.26 16 31 H 0.04 0.55 8.14 -51.93 -0.42 0.13 16 32 H 0.06 1.22 7.66 -51.93 -0.40 0.82 16 33 H 0.05 0.93 7.42 -51.93 -0.39 0.55 16 34 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 35 H 0.05 0.82 6.40 -51.93 -0.33 0.49 16 36 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 37 H 0.05 0.72 8.14 -51.93 -0.42 0.29 16 38 H 0.39 6.43 4.79 -40.82 -0.20 6.23 16 39 H 0.13 1.60 6.37 -52.49 -0.33 1.26 16 40 H 0.13 1.03 8.06 -52.49 -0.42 0.61 16 41 H 0.13 0.97 8.06 -52.49 -0.42 0.55 16 42 H 0.14 0.98 8.06 -52.49 -0.42 0.56 16 43 H 0.14 0.97 8.06 -52.49 -0.42 0.55 16 44 H 0.16 1.79 8.06 -52.49 -0.42 1.37 16 45 H 0.02 0.63 8.14 -51.92 -0.42 0.20 16 46 H 0.10 2.78 6.15 -51.93 -0.32 2.46 16 47 H 0.25 7.47 8.31 -40.82 -0.34 7.13 16 LS Contribution 372.96 15.07 5.62 5.62 Total: -1.00 -35.35 372.96 -10.69 -46.03 By element: Atomic # 1 Polarization: 12.67 SS G_CDS: -6.47 Total: 6.20 kcal Atomic # 6 Polarization: 3.93 SS G_CDS: -4.67 Total: -0.75 kcal Atomic # 7 Polarization: -62.23 SS G_CDS: -0.21 Total: -62.44 kcal Atomic # 8 Polarization: -12.39 SS G_CDS: 0.08 Total: -12.31 kcal Atomic # 14 Polarization: 22.67 SS G_CDS: -5.03 Total: 17.64 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -35.35 -10.69 -46.03 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071653947.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.540 kcal (2) G-P(sol) polarization free energy of solvation -35.346 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.194 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.689 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.035 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.505 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds