Wall clock time and date at job start Tue Mar 31 2020 22:14:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09002 * 109.59185 * 2 1 4 4 C 1.53199 * 109.58870 * 239.56793 * 2 1 3 5 5 C 1.53036 * 109.31484 * 185.58163 * 4 2 1 6 6 C 1.53033 * 109.53865 * 61.36667 * 5 4 2 7 7 H 1.08998 * 109.52468 * 178.66658 * 6 5 4 8 8 N 1.46502 * 109.49807 * 58.58587 * 6 5 4 9 9 C 1.34780 * 119.99655 * 155.16358 * 8 6 5 10 10 O 1.21593 * 120.00342 * 359.72283 * 9 8 6 11 11 C 1.47432 * 119.99367 * 180.02562 * 9 8 6 12 12 C 1.38744 * 120.33729 * 359.72289 * 11 9 8 13 13 C 1.38866 * 120.72609 * 180.02562 * 12 11 9 14 14 C 1.36349 * 121.05884 * 359.97438 * 13 12 11 15 15 C 1.40441 * 120.08789 * 0.02562 * 14 13 12 16 16 C 1.40808 * 121.26973 * 179.97438 * 15 14 13 17 17 C 1.36636 * 118.15139 * 179.97438 * 16 15 14 18 18 C 1.39237 * 119.90906 * 0.02562 * 17 16 15 19 19 N 1.31228 * 121.69612 * 359.97438 * 18 17 16 20 20 C 1.33347 * 121.35260 * 359.69865 * 19 18 17 21 21 C 1.53193 * 109.31379 * 298.63498 * 6 5 4 22 22 N 1.46922 * 108.77490 * 54.63474 * 21 6 5 23 23 C 1.36939 * 120.63191 * 126.41293 * 22 21 6 24 24 H 1.07996 * 120.00303 * 209.01598 * 23 22 21 25 25 C 1.38817 * 119.99628 * 29.01772 * 23 22 21 26 26 N 1.31617 * 119.99983 * 15.01578 * 25 23 22 27 27 Si 1.86800 * 119.99942 * 195.01069 * 25 23 22 28 28 H 1.48503 * 109.46928 * 59.99756 * 27 25 23 29 29 H 1.48496 * 109.47390 * 180.02562 * 27 25 23 30 30 H 1.48503 * 109.47341 * 300.00514 * 27 25 23 31 31 H 1.08994 * 109.47288 * 299.72188 * 1 2 3 32 32 H 1.09001 * 109.47002 * 59.71891 * 1 2 3 33 33 H 1.09000 * 109.47620 * 179.71797 * 1 2 3 34 34 H 1.09001 * 109.49402 * 305.53630 * 4 2 1 35 35 H 1.09002 * 109.48980 * 65.62845 * 4 2 1 36 36 H 1.09003 * 109.45920 * 301.34419 * 5 4 2 37 37 H 1.08995 * 109.45812 * 181.39120 * 5 4 2 38 38 H 0.96994 * 119.99898 * 335.16058 * 8 6 5 39 39 H 1.08001 * 119.63405 * 0.02562 * 12 11 9 40 40 H 1.08000 * 119.47041 * 180.02562 * 13 12 11 41 41 H 1.08006 * 119.95757 * 179.97438 * 14 13 12 42 42 H 1.07995 * 120.92783 * 359.96676 * 16 15 14 43 43 H 1.07995 * 120.04452 * 179.97438 * 17 16 15 44 44 H 1.08005 * 119.14683 * 179.97438 * 18 17 16 45 45 H 1.09000 * 109.59120 * 174.42543 * 21 6 5 46 46 H 1.09000 * 109.58637 * 294.84468 * 21 6 5 47 47 H 0.97007 * 119.99583 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8955 1.0269 0.0000 4 6 2.0436 -0.7311 -1.2445 5 6 3.5675 -0.8496 -1.1690 6 6 3.9568 -1.6658 0.0656 7 1 5.0410 -1.7702 0.1062 8 7 3.3403 -2.9926 -0.0109 9 6 3.8950 -4.0321 0.6435 10 8 4.9099 -3.8698 1.2933 11 6 3.2749 -5.3674 0.5659 12 6 2.1173 -5.5605 -0.1740 13 6 1.5261 -6.8147 -0.2521 14 6 2.0652 -7.8879 0.3934 15 6 3.2364 -7.7369 1.1535 16 6 3.8140 -8.8280 1.8306 17 6 4.9541 -8.6092 2.5512 18 6 5.5105 -7.3338 2.6001 19 7 4.9682 -6.3203 1.9671 20 6 3.8593 -6.4685 1.2415 21 6 3.4650 -0.9454 1.3250 22 7 2.0225 -0.6981 1.1954 23 6 1.1536 -1.1100 2.1703 24 1 0.1359 -1.3648 1.9142 25 6 1.5810 -1.1999 3.4880 26 7 2.7043 -0.6212 3.8564 27 14 0.5619 -2.1421 4.7382 28 1 0.4320 -3.5568 4.3058 29 1 1.2302 -2.0883 6.0632 30 1 -0.7872 -1.5297 4.8396 31 1 -0.3633 0.5095 0.8924 32 1 -0.3633 0.5182 -0.8875 33 1 -0.3634 -1.0276 -0.0051 34 1 1.6029 -1.7270 -1.2891 35 1 1.7660 -0.1696 -2.1366 36 1 4.0062 0.1458 -1.0995 37 1 3.9377 -1.3476 -2.0651 38 1 2.5330 -3.1229 -0.5326 39 1 1.6710 -4.7263 -0.6948 40 1 0.6254 -6.9422 -0.8342 41 1 1.5903 -8.8553 0.3208 42 1 3.3683 -9.8105 1.7819 43 1 5.4226 -9.4243 3.0827 44 1 6.4117 -7.1747 3.1737 45 1 3.6517 -1.5690 2.1992 46 1 3.9903 0.0037 1.4317 47 1 3.0031 -0.6844 4.7772 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001071653948.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:14:20 Heat of formation + Delta-G solvation = 52.143632 kcal Electronic energy + Delta-G solvation = -30347.660607 eV Core-core repulsion = 26496.153953 eV Total energy + Delta-G solvation = -3851.506654 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.25 seconds Orbital eigenvalues (eV) -40.87651 -39.18837 -37.48444 -36.78088 -34.00339 -33.36051 -32.67169 -31.11934 -30.46441 -29.90014 -29.47183 -26.17945 -24.98023 -24.52415 -23.45261 -23.14810 -22.10334 -20.59744 -20.14709 -18.76013 -18.16232 -17.66924 -16.78477 -16.25395 -15.91627 -15.28888 -14.93629 -14.68455 -14.51005 -14.05611 -14.04443 -13.86237 -13.64882 -13.57547 -13.23319 -13.01473 -12.82990 -12.69824 -12.42565 -12.09592 -11.86281 -11.67036 -11.39353 -11.13343 -11.12249 -10.89299 -10.82721 -10.64819 -10.46048 -10.34515 -10.28054 -9.91075 -9.59748 -9.43474 -9.38283 -8.83959 -8.81122 -8.37446 -8.32377 -8.11845 -6.53173 -5.67793 -3.11838 0.20714 0.81880 1.81808 2.82049 3.42184 3.49029 3.49977 3.65049 3.79426 4.30632 4.36718 4.55430 4.56145 4.69620 4.80380 4.84513 5.04122 5.11385 5.24674 5.36907 5.41940 5.43799 5.51393 5.56595 5.65834 5.69642 5.86264 5.90452 6.00709 6.06785 6.16199 6.18164 6.20744 6.29319 6.36931 6.38937 6.45391 6.49330 6.59243 6.66182 6.77129 6.77953 6.98771 7.09287 7.18319 7.50299 7.79752 7.90299 8.09134 8.26929 8.56543 8.99866 9.30613 9.95390 10.51138 11.39902 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.010993 B = 0.004479 C = 0.003993 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2546.533164 B = 6250.493275 C = 7011.058490 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.165 3.835 3 H 0.024 0.976 4 C -0.130 4.130 5 C -0.118 4.118 6 C 0.121 3.879 7 H 0.076 0.924 8 N -0.700 5.700 9 C 0.550 3.450 10 O -0.504 6.504 11 C -0.091 4.091 12 C -0.067 4.067 13 C -0.121 4.121 14 C -0.083 4.083 15 C -0.110 4.110 16 C -0.063 4.063 17 C -0.176 4.176 18 C 0.126 3.874 19 N -0.429 5.429 20 C 0.160 3.840 21 C 0.162 3.838 22 N -0.582 5.582 23 C -0.250 4.250 24 H 0.067 0.933 25 C 0.008 3.992 26 N -0.898 5.898 27 Si 0.894 3.106 28 H -0.286 1.286 29 H -0.291 1.291 30 H -0.284 1.284 31 H 0.060 0.940 32 H 0.036 0.964 33 H 0.051 0.949 34 H 0.053 0.947 35 H 0.052 0.948 36 H 0.070 0.930 37 H 0.050 0.950 38 H 0.390 0.610 39 H 0.134 0.866 40 H 0.132 0.868 41 H 0.131 0.869 42 H 0.137 0.863 43 H 0.135 0.865 44 H 0.158 0.842 45 H 0.098 0.902 46 H 0.024 0.976 47 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.159 -14.210 -10.674 17.773 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.058 3.942 3 H 0.042 0.958 4 C -0.169 4.169 5 C -0.157 4.157 6 C 0.015 3.985 7 H 0.094 0.906 8 N -0.352 5.352 9 C 0.335 3.665 10 O -0.379 6.379 11 C -0.095 4.095 12 C -0.088 4.088 13 C -0.139 4.139 14 C -0.102 4.102 15 C -0.113 4.113 16 C -0.089 4.089 17 C -0.196 4.196 18 C -0.047 4.047 19 N -0.135 5.135 20 C 0.037 3.963 21 C 0.035 3.965 22 N -0.305 5.305 23 C -0.380 4.380 24 H 0.084 0.916 25 C -0.192 4.192 26 N -0.542 5.542 27 Si 0.725 3.275 28 H -0.213 1.213 29 H -0.217 1.217 30 H -0.210 1.210 31 H 0.079 0.921 32 H 0.055 0.945 33 H 0.070 0.930 34 H 0.072 0.928 35 H 0.071 0.929 36 H 0.089 0.911 37 H 0.069 0.931 38 H 0.226 0.774 39 H 0.152 0.848 40 H 0.150 0.850 41 H 0.149 0.851 42 H 0.155 0.845 43 H 0.153 0.847 44 H 0.176 0.824 45 H 0.116 0.884 46 H 0.042 0.958 47 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 0.975 -13.129 -10.025 16.547 hybrid contribution -1.385 -1.435 0.571 2.074 sum -0.410 -14.563 -9.454 17.368 Atomic orbital electron populations 1.21794 0.96206 1.01125 1.00162 1.20455 0.92807 0.93644 0.87246 0.95808 1.22063 0.95244 1.00530 0.99072 1.21688 0.96922 1.00167 0.96877 1.21747 0.96988 0.81700 0.98065 0.90635 1.45775 1.29506 1.08605 1.51324 1.17745 0.84765 0.83448 0.80514 1.90822 1.23775 1.84185 1.39115 1.20144 0.96325 0.93847 0.99184 1.21461 0.93476 0.97737 0.96120 1.20821 1.00385 0.92392 1.00266 1.21078 0.94188 0.99350 0.95551 1.18829 0.97407 0.94420 1.00598 1.21406 0.94945 0.98014 0.94564 1.21938 0.97514 0.99106 1.01073 1.23182 0.98610 0.88011 0.94910 1.68353 1.08307 1.31855 1.05001 1.18666 0.91842 0.90963 0.94851 1.21200 0.83593 0.96993 0.94712 1.44032 1.02761 1.64841 1.18908 1.19003 0.94569 1.38264 0.86140 0.91586 1.25027 0.97618 0.99558 0.96948 1.69964 1.23064 1.44215 1.16921 0.86501 0.79583 0.80287 0.81173 1.21262 1.21691 1.21019 0.92050 0.94483 0.93035 0.92844 0.92916 0.91135 0.93082 0.77420 0.84816 0.84968 0.85133 0.84510 0.84674 0.82443 0.88380 0.95812 0.93648 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.45 7.94 37.16 0.30 -2.15 16 2 C 0.17 3.27 3.50 -67.60 -0.24 3.03 16 3 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 4 C -0.13 -2.07 5.21 -26.61 -0.14 -2.21 16 5 C -0.12 -1.91 5.58 -26.70 -0.15 -2.06 16 6 C 0.12 2.39 2.81 -67.81 -0.19 2.20 16 7 H 0.08 1.55 7.58 -51.93 -0.39 1.16 16 8 N -0.70 -13.22 4.87 -54.77 -0.27 -13.49 16 9 C 0.55 11.53 7.73 -12.52 -0.10 11.43 16 10 O -0.50 -12.41 14.85 5.28 0.08 -12.33 16 11 C -0.09 -1.64 5.91 -104.61 -0.62 -2.26 16 12 C -0.07 -0.94 9.52 -39.16 -0.37 -1.31 16 13 C -0.12 -1.35 9.93 -40.03 -0.40 -1.75 16 14 C -0.08 -0.92 9.75 -39.43 -0.38 -1.30 16 15 C -0.11 -1.52 5.74 -106.82 -0.61 -2.13 16 16 C -0.06 -0.69 9.90 -39.19 -0.39 -1.08 16 17 C -0.18 -1.91 10.03 -39.79 -0.40 -2.31 16 18 C 0.13 1.77 11.15 -17.44 -0.19 1.58 16 19 N -0.43 -8.06 8.44 -10.76 -0.09 -8.15 16 20 C 0.16 2.84 6.61 -84.58 -0.56 2.28 16 21 C 0.16 3.96 4.89 -3.71 -0.02 3.94 16 22 N -0.58 -14.02 2.91 -164.77 -0.48 -14.50 16 23 C -0.25 -6.69 8.60 -15.06 -0.13 -6.82 16 24 H 0.07 1.72 6.21 -52.49 -0.33 1.39 16 25 C 0.01 0.22 4.96 -17.43 -0.09 0.13 16 26 N -0.90 -27.03 11.14 55.49 0.62 -26.41 16 27 Si 0.89 22.71 29.58 -169.99 -5.03 17.68 16 28 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 29 H -0.29 -7.54 7.11 56.52 0.40 -7.13 16 30 H -0.28 -6.99 7.11 56.52 0.40 -6.59 16 31 H 0.06 1.23 7.62 -51.93 -0.40 0.83 16 32 H 0.04 0.55 8.14 -51.93 -0.42 0.13 16 33 H 0.05 0.93 7.45 -51.93 -0.39 0.54 16 34 H 0.05 0.83 6.40 -51.93 -0.33 0.49 16 35 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 36 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 37 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 38 H 0.39 6.45 4.79 -40.82 -0.20 6.26 16 39 H 0.13 1.61 6.37 -52.49 -0.33 1.28 16 40 H 0.13 1.04 8.06 -52.49 -0.42 0.62 16 41 H 0.13 0.99 8.06 -52.48 -0.42 0.56 16 42 H 0.14 0.99 8.06 -52.49 -0.42 0.57 16 43 H 0.14 0.97 8.06 -52.49 -0.42 0.55 16 44 H 0.16 1.79 8.06 -52.48 -0.42 1.36 16 45 H 0.10 2.86 6.06 -51.93 -0.31 2.55 16 46 H 0.02 0.62 8.14 -51.93 -0.42 0.19 16 47 H 0.25 7.54 8.31 -40.82 -0.34 7.20 16 LS Contribution 372.77 15.07 5.62 5.62 Total: -1.00 -35.26 372.77 -10.69 -45.95 By element: Atomic # 1 Polarization: 12.89 SS G_CDS: -6.46 Total: 6.43 kcal Atomic # 6 Polarization: 3.88 SS G_CDS: -4.68 Total: -0.80 kcal Atomic # 7 Polarization: -62.33 SS G_CDS: -0.22 Total: -62.55 kcal Atomic # 8 Polarization: -12.41 SS G_CDS: 0.08 Total: -12.33 kcal Atomic # 14 Polarization: 22.71 SS G_CDS: -5.03 Total: 17.68 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -35.26 -10.69 -45.95 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071653948.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.094 kcal (2) G-P(sol) polarization free energy of solvation -35.259 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.835 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.692 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.951 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.144 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.25 seconds