Wall clock time and date at job start Tue Mar 31 2020 22:14:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09002 * 109.59185 * 2 1 4 4 C 1.53199 * 109.58870 * 239.56793 * 2 1 3 5 5 C 1.53036 * 109.31484 * 185.58163 * 4 2 1 6 6 C 1.53033 * 109.53865 * 61.36667 * 5 4 2 7 7 H 1.08998 * 109.52468 * 178.66658 * 6 5 4 8 8 N 1.46502 * 109.49807 * 58.58587 * 6 5 4 9 9 C 1.34780 * 119.99655 * 155.16358 * 8 6 5 10 10 O 1.21593 * 120.00342 * 359.72283 * 9 8 6 11 11 C 1.47432 * 119.99367 * 180.02562 * 9 8 6 12 12 C 1.38744 * 120.33729 * 359.72289 * 11 9 8 13 13 C 1.38866 * 120.72609 * 180.02562 * 12 11 9 14 14 C 1.36349 * 121.05884 * 359.97438 * 13 12 11 15 15 C 1.40441 * 120.08789 * 0.02562 * 14 13 12 16 16 C 1.40808 * 121.26973 * 179.97438 * 15 14 13 17 17 C 1.36636 * 118.15139 * 179.97438 * 16 15 14 18 18 C 1.39237 * 119.90906 * 0.02562 * 17 16 15 19 19 N 1.31228 * 121.69612 * 359.97438 * 18 17 16 20 20 C 1.33347 * 121.35260 * 359.69865 * 19 18 17 21 21 C 1.53193 * 109.31379 * 298.63498 * 6 5 4 22 22 N 1.46922 * 108.77490 * 54.63474 * 21 6 5 23 23 C 1.36939 * 120.63191 * 126.41293 * 22 21 6 24 24 H 1.07996 * 120.00303 * 209.01598 * 23 22 21 25 25 C 1.38817 * 119.99628 * 29.01772 * 23 22 21 26 26 N 1.31617 * 119.99983 * 15.01578 * 25 23 22 27 27 Si 1.86800 * 119.99942 * 195.01069 * 25 23 22 28 28 H 1.48503 * 109.46928 * 59.99756 * 27 25 23 29 29 H 1.48496 * 109.47390 * 180.02562 * 27 25 23 30 30 H 1.48503 * 109.47341 * 300.00514 * 27 25 23 31 31 H 1.08994 * 109.47288 * 299.72188 * 1 2 3 32 32 H 1.09001 * 109.47002 * 59.71891 * 1 2 3 33 33 H 1.09000 * 109.47620 * 179.71797 * 1 2 3 34 34 H 1.09001 * 109.49402 * 305.53630 * 4 2 1 35 35 H 1.09002 * 109.48980 * 65.62845 * 4 2 1 36 36 H 1.09003 * 109.45920 * 301.34419 * 5 4 2 37 37 H 1.08995 * 109.45812 * 181.39120 * 5 4 2 38 38 H 0.96994 * 119.99898 * 335.16058 * 8 6 5 39 39 H 1.08001 * 119.63405 * 0.02562 * 12 11 9 40 40 H 1.08000 * 119.47041 * 180.02562 * 13 12 11 41 41 H 1.08006 * 119.95757 * 179.97438 * 14 13 12 42 42 H 1.07995 * 120.92783 * 359.96676 * 16 15 14 43 43 H 1.07995 * 120.04452 * 179.97438 * 17 16 15 44 44 H 1.08005 * 119.14683 * 179.97438 * 18 17 16 45 45 H 1.09000 * 109.59120 * 174.42543 * 21 6 5 46 46 H 1.09000 * 109.58637 * 294.84468 * 21 6 5 47 47 H 0.97007 * 119.99583 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8955 1.0269 0.0000 4 6 2.0436 -0.7311 -1.2445 5 6 3.5675 -0.8496 -1.1690 6 6 3.9568 -1.6658 0.0656 7 1 5.0410 -1.7702 0.1062 8 7 3.3403 -2.9926 -0.0109 9 6 3.8950 -4.0321 0.6435 10 8 4.9099 -3.8698 1.2933 11 6 3.2749 -5.3674 0.5659 12 6 2.1173 -5.5605 -0.1740 13 6 1.5261 -6.8147 -0.2521 14 6 2.0652 -7.8879 0.3934 15 6 3.2364 -7.7369 1.1535 16 6 3.8140 -8.8280 1.8306 17 6 4.9541 -8.6092 2.5512 18 6 5.5105 -7.3338 2.6001 19 7 4.9682 -6.3203 1.9671 20 6 3.8593 -6.4685 1.2415 21 6 3.4650 -0.9454 1.3250 22 7 2.0225 -0.6981 1.1954 23 6 1.1536 -1.1100 2.1703 24 1 0.1359 -1.3648 1.9142 25 6 1.5810 -1.1999 3.4880 26 7 2.7043 -0.6212 3.8564 27 14 0.5619 -2.1421 4.7382 28 1 0.4320 -3.5568 4.3058 29 1 1.2302 -2.0883 6.0632 30 1 -0.7872 -1.5297 4.8396 31 1 -0.3633 0.5095 0.8924 32 1 -0.3633 0.5182 -0.8875 33 1 -0.3634 -1.0276 -0.0051 34 1 1.6029 -1.7270 -1.2891 35 1 1.7660 -0.1696 -2.1366 36 1 4.0062 0.1458 -1.0995 37 1 3.9377 -1.3476 -2.0651 38 1 2.5330 -3.1229 -0.5326 39 1 1.6710 -4.7263 -0.6948 40 1 0.6254 -6.9422 -0.8342 41 1 1.5903 -8.8553 0.3208 42 1 3.3683 -9.8105 1.7819 43 1 5.4226 -9.4243 3.0827 44 1 6.4117 -7.1747 3.1737 45 1 3.6517 -1.5690 2.1992 46 1 3.9903 0.0037 1.4317 47 1 3.0031 -0.6844 4.7772 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001071653948.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:14:19 Heat of formation + Delta-G solvation = 28.519010 kcal Electronic energy + Delta-G solvation = -30348.685047 eV Core-core repulsion = 26496.153953 eV Total energy + Delta-G solvation = -3852.531094 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -41.94629 -40.69788 -39.03910 -37.86870 -35.73717 -34.50998 -34.39397 -32.49862 -31.75275 -31.46050 -30.71155 -27.86199 -26.79953 -25.59236 -24.47866 -24.32471 -23.84489 -22.14371 -21.55231 -20.39779 -19.24122 -18.85205 -18.18232 -17.77589 -17.22899 -16.92109 -16.45406 -16.01656 -15.75961 -15.65857 -15.51039 -15.13239 -15.06392 -14.88206 -14.69519 -14.35441 -14.09649 -14.01285 -13.82519 -13.59816 -13.07505 -12.95928 -12.87194 -12.70497 -12.60631 -12.57458 -12.41541 -12.28161 -12.14368 -12.08365 -11.57982 -11.46731 -11.21985 -11.05267 -10.95034 -10.52766 -10.07621 -9.90222 -9.79122 -9.24620 -8.57654 -7.82391 -5.27297 -0.78819 -0.15590 0.80238 1.34869 1.39897 1.43869 1.83604 2.25375 2.42090 2.48365 3.19500 3.33697 3.37819 3.60857 3.63828 3.77535 3.89214 3.97926 4.05082 4.06840 4.10877 4.17976 4.21526 4.44635 4.50368 4.51743 4.64849 4.69846 4.77814 4.83097 4.93314 4.96858 4.99865 5.05630 5.08852 5.11424 5.13559 5.23184 5.27363 5.32976 5.36317 5.58233 5.58849 5.62697 5.70111 5.75779 5.78790 5.86829 6.43591 6.75251 7.11710 7.17890 7.49142 7.93366 8.43916 9.22504 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.010993 B = 0.004479 C = 0.003993 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2546.533164 B = 6250.493275 C = 7011.058490 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C 0.153 3.847 3 H 0.013 0.987 4 C -0.118 4.118 5 C -0.109 4.109 6 C 0.130 3.870 7 H 0.057 0.943 8 N -0.690 5.690 9 C 0.542 3.458 10 O -0.561 6.561 11 C -0.150 4.150 12 C -0.051 4.051 13 C -0.127 4.127 14 C -0.059 4.059 15 C -0.131 4.131 16 C -0.050 4.050 17 C -0.176 4.176 18 C 0.112 3.888 19 N -0.502 5.502 20 C 0.126 3.874 21 C 0.173 3.827 22 N -0.593 5.593 23 C -0.232 4.232 24 H 0.080 0.920 25 C -0.058 4.058 26 N -0.938 5.938 27 Si 0.948 3.052 28 H -0.288 1.288 29 H -0.306 1.306 30 H -0.264 1.264 31 H 0.033 0.967 32 H 0.077 0.923 33 H 0.053 0.947 34 H 0.064 0.936 35 H 0.093 0.907 36 H 0.072 0.928 37 H 0.085 0.915 38 H 0.403 0.597 39 H 0.149 0.851 40 H 0.177 0.823 41 H 0.181 0.819 42 H 0.187 0.813 43 H 0.177 0.823 44 H 0.167 0.833 45 H 0.044 0.956 46 H -0.006 1.006 47 H 0.240 0.760 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.576 -17.643 -13.894 22.740 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.048 3.952 3 H 0.031 0.969 4 C -0.157 4.157 5 C -0.147 4.147 6 C 0.023 3.977 7 H 0.075 0.925 8 N -0.342 5.342 9 C 0.329 3.671 10 O -0.440 6.440 11 C -0.154 4.154 12 C -0.071 4.071 13 C -0.145 4.145 14 C -0.077 4.077 15 C -0.133 4.133 16 C -0.075 4.075 17 C -0.195 4.195 18 C -0.060 4.060 19 N -0.210 5.210 20 C 0.004 3.996 21 C 0.046 3.954 22 N -0.317 5.317 23 C -0.363 4.363 24 H 0.097 0.903 25 C -0.252 4.252 26 N -0.585 5.585 27 Si 0.778 3.222 28 H -0.215 1.215 29 H -0.233 1.233 30 H -0.189 1.189 31 H 0.053 0.947 32 H 0.096 0.904 33 H 0.072 0.928 34 H 0.083 0.917 35 H 0.112 0.888 36 H 0.091 0.909 37 H 0.103 0.897 38 H 0.241 0.759 39 H 0.166 0.834 40 H 0.194 0.806 41 H 0.198 0.802 42 H 0.204 0.796 43 H 0.195 0.805 44 H 0.184 0.816 45 H 0.062 0.938 46 H 0.012 0.988 47 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges -2.503 -16.562 -13.309 21.393 hybrid contribution -0.322 -0.432 1.532 1.624 sum -2.825 -16.994 -11.776 20.867 Atomic orbital electron populations 1.21723 0.94435 1.01496 1.00861 1.20795 0.94358 0.93151 0.86905 0.96928 1.21959 0.94380 1.01130 0.98192 1.21659 0.97624 0.99742 0.95717 1.21442 0.95985 0.82481 0.97769 0.92476 1.45636 1.29790 1.07723 1.51080 1.18464 0.84198 0.85096 0.79312 1.90768 1.26358 1.85302 1.41526 1.20069 0.99201 0.92411 1.03711 1.21781 0.91526 0.99831 0.94002 1.21297 1.01575 0.90943 1.00677 1.21692 0.92188 1.01377 0.92455 1.19228 0.98612 0.93619 1.01836 1.22002 0.94143 0.99055 0.92319 1.22292 0.97669 0.98445 1.01104 1.23626 0.98988 0.89125 0.94253 1.68244 1.10453 1.34617 1.07679 1.19015 0.92337 0.92777 0.95483 1.20815 0.84352 0.94988 0.95221 1.44244 1.02047 1.65546 1.19877 1.19391 0.95049 1.35533 0.86324 0.90293 1.25747 0.98873 1.01506 0.99115 1.70160 1.25234 1.46899 1.16213 0.85615 0.79016 0.79009 0.78593 1.21506 1.23275 1.18928 0.94730 0.90423 0.92760 0.91738 0.88823 0.90922 0.89686 0.75867 0.83369 0.80577 0.80208 0.79560 0.80543 0.81578 0.93797 0.98846 0.95086 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.28 7.94 71.98 0.57 -3.71 16 2 C 0.15 5.85 3.50 44.98 0.16 6.01 16 3 H 0.01 0.53 8.14 -2.39 -0.02 0.51 16 4 C -0.12 -3.36 5.21 30.67 0.16 -3.20 16 5 C -0.11 -3.36 5.58 30.62 0.17 -3.19 16 6 C 0.13 5.38 2.81 45.07 0.13 5.50 16 7 H 0.06 2.56 7.58 -2.39 -0.02 2.54 16 8 N -0.69 -26.92 4.87 -445.44 -2.17 -29.09 16 9 C 0.54 24.40 7.73 86.66 0.67 25.07 16 10 O -0.56 -30.65 14.85 -4.01 -0.06 -30.71 16 11 C -0.15 -5.61 5.91 -19.86 -0.12 -5.73 16 12 C -0.05 -1.34 9.52 22.54 0.21 -1.13 16 13 C -0.13 -2.32 9.93 21.98 0.22 -2.10 16 14 C -0.06 -1.03 9.75 22.37 0.22 -0.81 16 15 C -0.13 -3.32 5.74 -21.29 -0.12 -3.44 16 16 C -0.05 -0.90 9.90 22.52 0.22 -0.68 16 17 C -0.18 -3.46 10.03 22.13 0.22 -3.24 16 18 C 0.11 3.30 11.15 85.02 0.95 4.25 16 19 N -0.50 -20.41 8.44 -187.95 -1.59 -21.99 16 20 C 0.13 4.66 6.61 40.62 0.27 4.92 16 21 C 0.17 9.12 4.89 86.36 0.42 9.54 16 22 N -0.59 -29.33 2.91 -675.22 -1.96 -31.29 16 23 C -0.23 -12.70 8.60 84.03 0.72 -11.98 16 24 H 0.08 4.07 6.21 -2.91 -0.02 4.05 16 25 C -0.06 -3.44 4.96 84.86 0.42 -3.02 16 26 N -0.94 -60.68 11.14 21.65 0.24 -60.44 16 27 Si 0.95 48.52 29.58 68.60 2.03 50.55 16 28 H -0.29 -14.65 7.11 99.48 0.71 -13.94 16 29 H -0.31 -16.24 7.11 99.48 0.71 -15.53 16 30 H -0.26 -12.51 7.11 99.48 0.71 -11.80 16 31 H 0.03 1.32 7.62 -2.39 -0.02 1.30 16 32 H 0.08 1.98 8.14 -2.39 -0.02 1.97 16 33 H 0.05 1.78 7.45 -2.39 -0.02 1.76 16 34 H 0.06 1.73 6.40 -2.39 -0.02 1.72 16 35 H 0.09 2.04 8.14 -2.39 -0.02 2.02 16 36 H 0.07 2.22 8.14 -2.39 -0.02 2.20 16 37 H 0.08 2.12 8.14 -2.39 -0.02 2.10 16 38 H 0.40 13.04 4.79 -92.71 -0.44 12.59 16 39 H 0.15 3.23 6.37 -2.91 -0.02 3.21 16 40 H 0.18 1.65 8.06 -2.91 -0.02 1.63 16 41 H 0.18 1.36 8.06 -2.91 -0.02 1.34 16 42 H 0.19 1.47 8.06 -2.91 -0.02 1.45 16 43 H 0.18 1.89 8.06 -2.91 -0.02 1.87 16 44 H 0.17 4.14 8.06 -2.91 -0.02 4.11 16 45 H 0.04 2.80 6.06 -2.39 -0.01 2.79 16 46 H -0.01 -0.36 8.14 -2.39 -0.02 -0.38 16 47 H 0.24 15.50 8.31 -92.70 -0.77 14.73 16 Total: -1.00 -90.21 372.77 2.54 -87.67 By element: Atomic # 1 Polarization: 21.67 SS G_CDS: 0.55 Total: 22.22 kcal Atomic # 6 Polarization: 7.59 SS G_CDS: 5.49 Total: 13.08 kcal Atomic # 7 Polarization: -137.34 SS G_CDS: -5.48 Total: -142.82 kcal Atomic # 8 Polarization: -30.65 SS G_CDS: -0.06 Total: -30.71 kcal Atomic # 14 Polarization: 48.52 SS G_CDS: 2.03 Total: 50.55 kcal Total: -90.21 2.54 -87.67 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071653948.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.190 kcal (2) G-P(sol) polarization free energy of solvation -90.211 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.980 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.539 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.671 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.519 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds