Wall clock time and date at job start Tue Mar 31 2020 22:14:24
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52999 * 1
3 3 H 1.09002 * 109.69538 * 2 1
4 4 C 1.53191 * 109.58500 * 239.64881 * 2 1 3
5 5 C 1.53048 * 109.30948 * 185.57312 * 4 2 1
6 6 C 1.53350 * 109.60469 * 61.37550 * 5 4 2
7 7 H 1.08999 * 109.47956 * 58.54713 * 6 5 4
8 8 N 1.46501 * 109.68152 * 178.74595 * 6 5 4
9 9 C 1.34783 * 119.99862 * 204.74895 * 8 6 5
10 10 O 1.21603 * 119.99842 * 359.97438 * 9 8 6
11 11 C 1.47427 * 119.99804 * 180.02562 * 9 8 6
12 12 C 1.38749 * 120.33780 * 359.97438 * 11 9 8
13 13 C 1.38861 * 120.72735 * 179.97438 * 12 11 9
14 14 C 1.36347 * 121.06092 * 0.02562 * 13 12 11
15 15 C 1.40443 * 120.08562 * 359.97438 * 14 13 12
16 16 C 1.40802 * 121.26735 * 180.02562 * 15 14 13
17 17 C 1.36636 * 118.15242 * 179.25984 * 16 15 14
18 18 C 1.39239 * 119.90826 * 0.70831 * 17 16 15
19 19 N 1.31231 * 121.69270 * 359.49891 * 18 17 16
20 20 C 1.33350 * 121.35182 * 0.02562 * 19 18 17
21 21 C 1.53190 * 109.15046 * 298.70723 * 6 5 4
22 22 N 1.46924 * 109.58825 * 120.35302 * 2 1 3
23 23 C 1.36932 * 120.63220 * 353.37983 * 22 2 1
24 24 H 1.07998 * 120.00257 * 29.06845 * 23 22 2
25 25 C 1.38815 * 120.00022 * 209.06619 * 23 22 2
26 26 N 1.31620 * 120.00010 * 15.04378 * 25 23 22
27 27 Si 1.86798 * 120.00070 * 195.04313 * 25 23 22
28 28 H 1.48503 * 109.47325 * 359.97438 * 27 25 23
29 29 H 1.48497 * 109.47084 * 120.00070 * 27 25 23
30 30 H 1.48498 * 109.47107 * 240.00011 * 27 25 23
31 31 H 1.09004 * 109.47399 * 299.63889 * 1 2 3
32 32 H 1.08996 * 109.47328 * 59.64426 * 1 2 3
33 33 H 1.09001 * 109.46880 * 179.64614 * 1 2 3
34 34 H 1.08994 * 109.49465 * 305.52505 * 4 2 1
35 35 H 1.08995 * 109.49846 * 65.58924 * 4 2 1
36 36 H 1.08999 * 109.45932 * 181.38026 * 5 4 2
37 37 H 1.08992 * 109.46099 * 301.35627 * 5 4 2
38 38 H 0.97001 * 120.00193 * 24.75382 * 8 6 5
39 39 H 1.08006 * 119.63139 * 359.95669 * 12 11 9
40 40 H 1.08003 * 119.46919 * 180.02562 * 13 12 11
41 41 H 1.08006 * 119.95855 * 180.02562 * 14 13 12
42 42 H 1.08003 * 120.92175 * 359.95228 * 16 15 14
43 43 H 1.08001 * 120.04806 * 180.20990 * 17 16 15
44 44 H 1.07997 * 119.15110 * 179.52979 * 18 17 16
45 45 H 1.09006 * 109.58831 * 294.72750 * 21 6 5
46 46 H 1.09000 * 109.59385 * 174.43893 * 21 6 5
47 47 H 0.96996 * 120.00153 * 179.97438 * 26 25 23
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8974 1.0263 0.0000
4 6 2.0435 -0.7293 -1.2455
5 6 3.5675 -0.8478 -1.1702
6 6 3.9595 -1.6672 0.0653
7 1 3.5009 -2.6543 0.0073
8 7 5.4167 -1.8070 0.1226
9 6 5.9686 -2.8475 0.7780
10 8 5.2569 -3.6698 1.3221
11 6 7.4350 -2.9878 0.8362
12 6 8.2536 -2.0533 0.2183
13 6 9.6357 -2.1774 0.2685
14 6 10.2253 -3.2177 0.9236
15 6 9.4343 -4.1862 1.5628
16 6 10.0169 -5.2703 2.2468
17 6 9.1875 -6.1670 2.8591
18 6 7.8072 -6.0007 2.7822
19 7 7.2692 -4.9910 2.1395
20 6 8.0232 -4.0762 1.5289
21 6 3.4651 -0.9469 1.3236
22 7 2.0226 -0.6995 1.1945
23 6 1.1538 -1.1127 2.1689
24 1 0.1363 -1.3678 1.9124
25 6 1.5811 -1.2037 3.4866
26 7 2.7038 -0.6244 3.8559
27 14 0.5627 -2.1484 4.7355
28 1 -0.6458 -2.7010 4.0726
29 1 1.3726 -3.2599 5.2955
30 1 0.1513 -1.2347 5.8315
31 1 -0.3634 0.5082 0.8932
32 1 -0.3634 0.5193 -0.8867
33 1 -0.3633 -1.0277 -0.0063
34 1 1.6030 -1.7252 -1.2914
35 1 1.7654 -0.1670 -2.1368
36 1 3.9378 -1.3446 -2.0669
37 1 4.0061 0.1475 -1.0992
38 1 5.9844 -1.1508 -0.3110
39 1 7.8107 -1.2204 -0.3077
40 1 10.2536 -1.4379 -0.2193
41 1 11.3022 -3.2965 0.9518
42 1 11.0899 -5.3836 2.2958
43 1 9.6017 -7.0081 3.3953
44 1 7.1629 -6.7210 3.2642
45 1 3.9903 0.0022 1.4316
46 1 3.6521 -1.5695 2.1985
47 1 3.0021 -0.6877 4.7766
RHF calculation, no. of doubly occupied orbitals= 63
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001071653949.mol2 47
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 22:14:24
Heat of formation + Delta-G solvation = 50.200053 kcal
Electronic energy + Delta-G solvation = -29480.456800 eV
Core-core repulsion = 25628.865866 eV
Total energy + Delta-G solvation = -3851.590934 eV
No. of doubly occupied orbitals = 63
Molecular weight
(most abundant/longest-lived isotopes) = 339.169 amu
Computer time = 1.19 seconds
Orbital eigenvalues (eV)
-40.98927 -39.14910 -37.53692 -36.90657 -34.27051 -33.46979 -32.74145 -31.13860
-30.57652 -29.92338 -29.53521 -26.02657 -25.02997 -24.53940 -23.54652 -23.11585
-22.14714 -20.62805 -19.94460 -19.20785 -18.31336 -17.65900 -16.89688 -16.31327
-15.98243 -15.44493 -15.01731 -14.79119 -14.64810 -14.07808 -13.99066 -13.88773
-13.70242 -13.57181 -13.30216 -13.09818 -13.03346 -12.62152 -12.33909 -12.19236
-11.85162 -11.76989 -11.49340 -11.37539 -11.05651 -10.81517 -10.65710 -10.58187
-10.41180 -10.32125 -10.17735 -9.88432 -9.74429 -9.52069 -9.36146 -8.93195
-8.92554 -8.46313 -8.34160 -8.27728 -6.53188 -5.65700 -3.10230 0.08244
0.70508 1.70556 2.69523 3.46713 3.52204 3.55936 3.57198 3.59616
4.18967 4.23904 4.43010 4.58844 4.60866 4.68951 4.74680 4.90617
4.98362 5.13774 5.33336 5.41814 5.44436 5.50326 5.60836 5.65270
5.73566 5.74970 5.80644 5.90773 6.04363 6.04512 6.16712 6.17140
6.32914 6.33390 6.39608 6.45281 6.52169 6.58905 6.66500 6.69233
6.83062 7.07267 7.10775 7.19043 7.42354 7.85968 7.93938 7.98668
8.10280 8.58650 8.83937 9.32939 9.97448 10.52363 11.42180
Molecular weight = 339.17amu
Principal moments of inertia in cm(-1)
A = 0.012387 B = 0.003545 C = 0.002957
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2259.917754 B = 7895.955658 C = 9467.372650
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.136 4.136
2 C 0.165 3.835
3 H 0.024 0.976
4 C -0.126 4.126
5 C -0.116 4.116
6 C 0.119 3.881
7 H 0.082 0.918
8 N -0.721 5.721
9 C 0.546 3.454
10 O -0.488 6.488
11 C -0.094 4.094
12 C -0.070 4.070
13 C -0.123 4.123
14 C -0.079 4.079
15 C -0.111 4.111
16 C -0.063 4.063
17 C -0.175 4.175
18 C 0.129 3.871
19 N -0.430 5.430
20 C 0.160 3.840
21 C 0.168 3.832
22 N -0.584 5.584
23 C -0.252 4.252
24 H 0.070 0.930
25 C 0.006 3.994
26 N -0.900 5.900
27 Si 0.899 3.101
28 H -0.277 1.277
29 H -0.288 1.288
30 H -0.292 1.292
31 H 0.061 0.939
32 H 0.037 0.963
33 H 0.053 0.947
34 H 0.060 0.940
35 H 0.054 0.946
36 H 0.050 0.950
37 H 0.058 0.942
38 H 0.387 0.613
39 H 0.135 0.865
40 H 0.133 0.867
41 H 0.132 0.868
42 H 0.138 0.862
43 H 0.137 0.863
44 H 0.160 0.840
45 H 0.015 0.985
46 H 0.096 0.904
47 H 0.251 0.749
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 17.257 -4.525 -9.338 20.137
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.194 4.194
2 C 0.058 3.942
3 H 0.042 0.958
4 C -0.166 4.166
5 C -0.154 4.154
6 C 0.014 3.986
7 H 0.100 0.900
8 N -0.373 5.373
9 C 0.330 3.670
10 O -0.361 6.361
11 C -0.098 4.098
12 C -0.091 4.091
13 C -0.141 4.141
14 C -0.098 4.098
15 C -0.113 4.113
16 C -0.089 4.089
17 C -0.195 4.195
18 C -0.044 4.044
19 N -0.137 5.137
20 C 0.037 3.963
21 C 0.041 3.959
22 N -0.307 5.307
23 C -0.381 4.381
24 H 0.088 0.912
25 C -0.192 4.192
26 N -0.544 5.544
27 Si 0.729 3.271
28 H -0.202 1.202
29 H -0.215 1.215
30 H -0.219 1.219
31 H 0.080 0.920
32 H 0.056 0.944
33 H 0.072 0.928
34 H 0.079 0.921
35 H 0.073 0.927
36 H 0.069 0.931
37 H 0.076 0.924
38 H 0.221 0.779
39 H 0.152 0.848
40 H 0.151 0.849
41 H 0.149 0.851
42 H 0.156 0.844
43 H 0.154 0.846
44 H 0.177 0.823
45 H 0.033 0.967
46 H 0.114 0.886
47 H 0.062 0.938
Dipole moment (debyes) X Y Z Total
from point charges 15.806 -4.945 -8.853 18.779
hybrid contribution 0.975 -0.183 0.613 1.166
sum 16.781 -5.127 -8.239 19.385
Atomic orbital electron populations
1.21802 0.96043 1.01371 1.00169 1.20483 0.93021 0.93525 0.87128
0.95824 1.22043 0.94342 1.01317 0.98869 1.21729 0.97355 0.99559
0.96756 1.21998 0.77653 1.00850 0.98089 0.89996 1.46002 1.08492
1.26893 1.55917 1.17842 0.86701 0.82337 0.80098 1.90896 1.61900
1.40979 1.42307 1.20150 0.94438 0.95255 0.99971 1.21455 0.93670
0.97344 0.96596 1.20815 0.94518 0.98679 1.00122 1.21102 0.99620
0.93366 0.95751 1.18838 0.93978 0.97382 1.01125 1.21421 1.00275
0.92672 0.94543 1.21970 0.95223 1.00872 1.01392 1.23223 0.92828
0.94576 0.93733 1.68382 1.38332 1.01134 1.05817 1.18672 0.88675
0.93690 0.95248 1.21093 0.83371 0.96853 0.94614 1.44037 1.02708
1.64734 1.19226 1.19177 0.94696 1.38131 0.86126 0.91192 1.25063
0.97685 0.99470 0.97026 1.70001 1.23301 1.44418 1.16691 0.86273
0.79649 0.79674 0.81482 1.20229 1.21497 1.21885 0.92006 0.94391
0.92804 0.92074 0.92742 0.93148 0.92368 0.77881 0.84762 0.84929
0.85061 0.84422 0.84555 0.82311 0.96680 0.88587 0.93842
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 17.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -2.62 7.94 37.16 0.30 -2.33 16
2 C 0.17 3.46 3.50 -67.60 -0.24 3.23 16
3 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16
4 C -0.13 -2.20 5.37 -26.61 -0.14 -2.35 16
5 C -0.12 -1.93 5.37 -26.53 -0.14 -2.07 16
6 C 0.12 2.43 2.62 -67.65 -0.18 2.25 16
7 H 0.08 1.91 7.58 -51.93 -0.39 1.51 16
8 N -0.72 -12.61 5.04 -54.61 -0.28 -12.88 16
9 C 0.55 10.77 7.73 -12.52 -0.10 10.68 16
10 O -0.49 -11.97 14.85 5.27 0.08 -11.89 16
11 C -0.09 -1.52 5.91 -104.61 -0.62 -2.14 16
12 C -0.07 -0.81 9.52 -39.16 -0.37 -1.18 16
13 C -0.12 -1.13 9.93 -40.03 -0.40 -1.53 16
14 C -0.08 -0.75 9.75 -39.43 -0.38 -1.13 16
15 C -0.11 -1.37 5.74 -106.82 -0.61 -1.98 16
16 C -0.06 -0.61 9.90 -39.19 -0.39 -1.00 16
17 C -0.17 -1.74 10.03 -39.79 -0.40 -2.14 16
18 C 0.13 1.73 11.15 -17.44 -0.19 1.54 16
19 N -0.43 -7.73 8.44 -10.76 -0.09 -7.82 16
20 C 0.16 2.62 6.61 -84.58 -0.56 2.06 16
21 C 0.17 4.21 4.86 -3.71 -0.02 4.19 16
22 N -0.58 -14.95 2.99 -164.77 -0.49 -15.45 16
23 C -0.25 -7.08 8.60 -15.06 -0.13 -7.21 16
24 H 0.07 1.92 6.21 -52.49 -0.33 1.59 16
25 C 0.01 0.19 4.96 -17.43 -0.09 0.10 16
26 N -0.90 -27.51 11.14 55.49 0.62 -26.89 16
27 Si 0.90 23.07 29.58 -169.99 -5.03 18.04 16
28 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16
29 H -0.29 -7.59 7.11 56.52 0.40 -7.19 16
30 H -0.29 -7.43 7.11 56.52 0.40 -7.03 16
31 H 0.06 1.28 7.62 -51.93 -0.40 0.88 16
32 H 0.04 0.60 8.14 -51.93 -0.42 0.17 16
33 H 0.05 1.06 7.45 -51.93 -0.39 0.67 16
34 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16
35 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16
36 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16
37 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16
38 H 0.39 5.25 6.63 -40.82 -0.27 4.98 16
39 H 0.13 1.21 6.37 -52.48 -0.33 0.87 16
40 H 0.13 0.78 8.06 -52.48 -0.42 0.36 16
41 H 0.13 0.79 8.06 -52.48 -0.42 0.37 16
42 H 0.14 0.84 8.06 -52.48 -0.42 0.42 16
43 H 0.14 0.88 8.06 -52.49 -0.42 0.46 16
44 H 0.16 1.75 8.06 -52.49 -0.42 1.32 16
45 H 0.02 0.40 8.14 -51.93 -0.42 -0.03 16
46 H 0.10 2.87 6.06 -51.93 -0.31 2.56 16
47 H 0.25 7.51 8.31 -40.82 -0.34 7.17 16
LS Contribution 376.34 15.07 5.67 5.67
Total: -1.00 -36.86 376.34 -10.81 -47.67
By element:
Atomic # 1 Polarization: 11.19 SS G_CDS: -6.63 Total: 4.56 kcal
Atomic # 6 Polarization: 3.64 SS G_CDS: -4.66 Total: -1.02 kcal
Atomic # 7 Polarization: -62.80 SS G_CDS: -0.24 Total: -63.04 kcal
Atomic # 8 Polarization: -11.97 SS G_CDS: 0.08 Total: -11.89 kcal
Atomic # 14 Polarization: 23.07 SS G_CDS: -5.03 Total: 18.04 kcal
Total LS contribution 5.67 Total: 5.67 kcal
Total: -36.86 -10.81 -47.67 kcal
The number of atoms in the molecule is 47
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001071653949.mol2 47
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 97.873 kcal
(2) G-P(sol) polarization free energy of solvation -36.863 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.010 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.810 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.673 kcal
(6) G-S(sol) free energy of system = (1) + (5) 50.200 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.19 seconds