Wall clock time and date at job start Tue Mar 31 2020 22:14:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09002 * 109.69538 * 2 1 4 4 C 1.53191 * 109.58500 * 239.64881 * 2 1 3 5 5 C 1.53048 * 109.30948 * 185.57312 * 4 2 1 6 6 C 1.53350 * 109.60469 * 61.37550 * 5 4 2 7 7 H 1.08999 * 109.47956 * 58.54713 * 6 5 4 8 8 N 1.46501 * 109.68152 * 178.74595 * 6 5 4 9 9 C 1.34783 * 119.99862 * 204.74895 * 8 6 5 10 10 O 1.21603 * 119.99842 * 359.97438 * 9 8 6 11 11 C 1.47427 * 119.99804 * 180.02562 * 9 8 6 12 12 C 1.38749 * 120.33780 * 359.97438 * 11 9 8 13 13 C 1.38861 * 120.72735 * 179.97438 * 12 11 9 14 14 C 1.36347 * 121.06092 * 0.02562 * 13 12 11 15 15 C 1.40443 * 120.08562 * 359.97438 * 14 13 12 16 16 C 1.40802 * 121.26735 * 180.02562 * 15 14 13 17 17 C 1.36636 * 118.15242 * 179.25984 * 16 15 14 18 18 C 1.39239 * 119.90826 * 0.70831 * 17 16 15 19 19 N 1.31231 * 121.69270 * 359.49891 * 18 17 16 20 20 C 1.33350 * 121.35182 * 0.02562 * 19 18 17 21 21 C 1.53190 * 109.15046 * 298.70723 * 6 5 4 22 22 N 1.46924 * 109.58825 * 120.35302 * 2 1 3 23 23 C 1.36932 * 120.63220 * 353.37983 * 22 2 1 24 24 H 1.07998 * 120.00257 * 29.06845 * 23 22 2 25 25 C 1.38815 * 120.00022 * 209.06619 * 23 22 2 26 26 N 1.31620 * 120.00010 * 15.04378 * 25 23 22 27 27 Si 1.86798 * 120.00070 * 195.04313 * 25 23 22 28 28 H 1.48503 * 109.47325 * 359.97438 * 27 25 23 29 29 H 1.48497 * 109.47084 * 120.00070 * 27 25 23 30 30 H 1.48498 * 109.47107 * 240.00011 * 27 25 23 31 31 H 1.09004 * 109.47399 * 299.63889 * 1 2 3 32 32 H 1.08996 * 109.47328 * 59.64426 * 1 2 3 33 33 H 1.09001 * 109.46880 * 179.64614 * 1 2 3 34 34 H 1.08994 * 109.49465 * 305.52505 * 4 2 1 35 35 H 1.08995 * 109.49846 * 65.58924 * 4 2 1 36 36 H 1.08999 * 109.45932 * 181.38026 * 5 4 2 37 37 H 1.08992 * 109.46099 * 301.35627 * 5 4 2 38 38 H 0.97001 * 120.00193 * 24.75382 * 8 6 5 39 39 H 1.08006 * 119.63139 * 359.95669 * 12 11 9 40 40 H 1.08003 * 119.46919 * 180.02562 * 13 12 11 41 41 H 1.08006 * 119.95855 * 180.02562 * 14 13 12 42 42 H 1.08003 * 120.92175 * 359.95228 * 16 15 14 43 43 H 1.08001 * 120.04806 * 180.20990 * 17 16 15 44 44 H 1.07997 * 119.15110 * 179.52979 * 18 17 16 45 45 H 1.09006 * 109.58831 * 294.72750 * 21 6 5 46 46 H 1.09000 * 109.59385 * 174.43893 * 21 6 5 47 47 H 0.96996 * 120.00153 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8974 1.0263 0.0000 4 6 2.0435 -0.7293 -1.2455 5 6 3.5675 -0.8478 -1.1702 6 6 3.9595 -1.6672 0.0653 7 1 3.5009 -2.6543 0.0073 8 7 5.4167 -1.8070 0.1226 9 6 5.9686 -2.8475 0.7780 10 8 5.2569 -3.6698 1.3221 11 6 7.4350 -2.9878 0.8362 12 6 8.2536 -2.0533 0.2183 13 6 9.6357 -2.1774 0.2685 14 6 10.2253 -3.2177 0.9236 15 6 9.4343 -4.1862 1.5628 16 6 10.0169 -5.2703 2.2468 17 6 9.1875 -6.1670 2.8591 18 6 7.8072 -6.0007 2.7822 19 7 7.2692 -4.9910 2.1395 20 6 8.0232 -4.0762 1.5289 21 6 3.4651 -0.9469 1.3236 22 7 2.0226 -0.6995 1.1945 23 6 1.1538 -1.1127 2.1689 24 1 0.1363 -1.3678 1.9124 25 6 1.5811 -1.2037 3.4866 26 7 2.7038 -0.6244 3.8559 27 14 0.5627 -2.1484 4.7355 28 1 -0.6458 -2.7010 4.0726 29 1 1.3726 -3.2599 5.2955 30 1 0.1513 -1.2347 5.8315 31 1 -0.3634 0.5082 0.8932 32 1 -0.3634 0.5193 -0.8867 33 1 -0.3633 -1.0277 -0.0063 34 1 1.6030 -1.7252 -1.2914 35 1 1.7654 -0.1670 -2.1368 36 1 3.9378 -1.3446 -2.0669 37 1 4.0061 0.1475 -1.0992 38 1 5.9844 -1.1508 -0.3110 39 1 7.8107 -1.2204 -0.3077 40 1 10.2536 -1.4379 -0.2193 41 1 11.3022 -3.2965 0.9518 42 1 11.0899 -5.3836 2.2958 43 1 9.6017 -7.0081 3.3953 44 1 7.1629 -6.7210 3.2642 45 1 3.9903 0.0022 1.4316 46 1 3.6521 -1.5695 2.1985 47 1 3.0021 -0.6877 4.7766 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001071653949.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:14:24 Heat of formation + Delta-G solvation = 50.200053 kcal Electronic energy + Delta-G solvation = -29480.456800 eV Core-core repulsion = 25628.865866 eV Total energy + Delta-G solvation = -3851.590934 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -40.98927 -39.14910 -37.53692 -36.90657 -34.27051 -33.46979 -32.74145 -31.13860 -30.57652 -29.92338 -29.53521 -26.02657 -25.02997 -24.53940 -23.54652 -23.11585 -22.14714 -20.62805 -19.94460 -19.20785 -18.31336 -17.65900 -16.89688 -16.31327 -15.98243 -15.44493 -15.01731 -14.79119 -14.64810 -14.07808 -13.99066 -13.88773 -13.70242 -13.57181 -13.30216 -13.09818 -13.03346 -12.62152 -12.33909 -12.19236 -11.85162 -11.76989 -11.49340 -11.37539 -11.05651 -10.81517 -10.65710 -10.58187 -10.41180 -10.32125 -10.17735 -9.88432 -9.74429 -9.52069 -9.36146 -8.93195 -8.92554 -8.46313 -8.34160 -8.27728 -6.53188 -5.65700 -3.10230 0.08244 0.70508 1.70556 2.69523 3.46713 3.52204 3.55936 3.57198 3.59616 4.18967 4.23904 4.43010 4.58844 4.60866 4.68951 4.74680 4.90617 4.98362 5.13774 5.33336 5.41814 5.44436 5.50326 5.60836 5.65270 5.73566 5.74970 5.80644 5.90773 6.04363 6.04512 6.16712 6.17140 6.32914 6.33390 6.39608 6.45281 6.52169 6.58905 6.66500 6.69233 6.83062 7.07267 7.10775 7.19043 7.42354 7.85968 7.93938 7.98668 8.10280 8.58650 8.83937 9.32939 9.97448 10.52363 11.42180 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.012387 B = 0.003545 C = 0.002957 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2259.917754 B = 7895.955658 C = 9467.372650 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.165 3.835 3 H 0.024 0.976 4 C -0.126 4.126 5 C -0.116 4.116 6 C 0.119 3.881 7 H 0.082 0.918 8 N -0.721 5.721 9 C 0.546 3.454 10 O -0.488 6.488 11 C -0.094 4.094 12 C -0.070 4.070 13 C -0.123 4.123 14 C -0.079 4.079 15 C -0.111 4.111 16 C -0.063 4.063 17 C -0.175 4.175 18 C 0.129 3.871 19 N -0.430 5.430 20 C 0.160 3.840 21 C 0.168 3.832 22 N -0.584 5.584 23 C -0.252 4.252 24 H 0.070 0.930 25 C 0.006 3.994 26 N -0.900 5.900 27 Si 0.899 3.101 28 H -0.277 1.277 29 H -0.288 1.288 30 H -0.292 1.292 31 H 0.061 0.939 32 H 0.037 0.963 33 H 0.053 0.947 34 H 0.060 0.940 35 H 0.054 0.946 36 H 0.050 0.950 37 H 0.058 0.942 38 H 0.387 0.613 39 H 0.135 0.865 40 H 0.133 0.867 41 H 0.132 0.868 42 H 0.138 0.862 43 H 0.137 0.863 44 H 0.160 0.840 45 H 0.015 0.985 46 H 0.096 0.904 47 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.257 -4.525 -9.338 20.137 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.058 3.942 3 H 0.042 0.958 4 C -0.166 4.166 5 C -0.154 4.154 6 C 0.014 3.986 7 H 0.100 0.900 8 N -0.373 5.373 9 C 0.330 3.670 10 O -0.361 6.361 11 C -0.098 4.098 12 C -0.091 4.091 13 C -0.141 4.141 14 C -0.098 4.098 15 C -0.113 4.113 16 C -0.089 4.089 17 C -0.195 4.195 18 C -0.044 4.044 19 N -0.137 5.137 20 C 0.037 3.963 21 C 0.041 3.959 22 N -0.307 5.307 23 C -0.381 4.381 24 H 0.088 0.912 25 C -0.192 4.192 26 N -0.544 5.544 27 Si 0.729 3.271 28 H -0.202 1.202 29 H -0.215 1.215 30 H -0.219 1.219 31 H 0.080 0.920 32 H 0.056 0.944 33 H 0.072 0.928 34 H 0.079 0.921 35 H 0.073 0.927 36 H 0.069 0.931 37 H 0.076 0.924 38 H 0.221 0.779 39 H 0.152 0.848 40 H 0.151 0.849 41 H 0.149 0.851 42 H 0.156 0.844 43 H 0.154 0.846 44 H 0.177 0.823 45 H 0.033 0.967 46 H 0.114 0.886 47 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 15.806 -4.945 -8.853 18.779 hybrid contribution 0.975 -0.183 0.613 1.166 sum 16.781 -5.127 -8.239 19.385 Atomic orbital electron populations 1.21802 0.96043 1.01371 1.00169 1.20483 0.93021 0.93525 0.87128 0.95824 1.22043 0.94342 1.01317 0.98869 1.21729 0.97355 0.99559 0.96756 1.21998 0.77653 1.00850 0.98089 0.89996 1.46002 1.08492 1.26893 1.55917 1.17842 0.86701 0.82337 0.80098 1.90896 1.61900 1.40979 1.42307 1.20150 0.94438 0.95255 0.99971 1.21455 0.93670 0.97344 0.96596 1.20815 0.94518 0.98679 1.00122 1.21102 0.99620 0.93366 0.95751 1.18838 0.93978 0.97382 1.01125 1.21421 1.00275 0.92672 0.94543 1.21970 0.95223 1.00872 1.01392 1.23223 0.92828 0.94576 0.93733 1.68382 1.38332 1.01134 1.05817 1.18672 0.88675 0.93690 0.95248 1.21093 0.83371 0.96853 0.94614 1.44037 1.02708 1.64734 1.19226 1.19177 0.94696 1.38131 0.86126 0.91192 1.25063 0.97685 0.99470 0.97026 1.70001 1.23301 1.44418 1.16691 0.86273 0.79649 0.79674 0.81482 1.20229 1.21497 1.21885 0.92006 0.94391 0.92804 0.92074 0.92742 0.93148 0.92368 0.77881 0.84762 0.84929 0.85061 0.84422 0.84555 0.82311 0.96680 0.88587 0.93842 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.62 7.94 37.16 0.30 -2.33 16 2 C 0.17 3.46 3.50 -67.60 -0.24 3.23 16 3 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 4 C -0.13 -2.20 5.37 -26.61 -0.14 -2.35 16 5 C -0.12 -1.93 5.37 -26.53 -0.14 -2.07 16 6 C 0.12 2.43 2.62 -67.65 -0.18 2.25 16 7 H 0.08 1.91 7.58 -51.93 -0.39 1.51 16 8 N -0.72 -12.61 5.04 -54.61 -0.28 -12.88 16 9 C 0.55 10.77 7.73 -12.52 -0.10 10.68 16 10 O -0.49 -11.97 14.85 5.27 0.08 -11.89 16 11 C -0.09 -1.52 5.91 -104.61 -0.62 -2.14 16 12 C -0.07 -0.81 9.52 -39.16 -0.37 -1.18 16 13 C -0.12 -1.13 9.93 -40.03 -0.40 -1.53 16 14 C -0.08 -0.75 9.75 -39.43 -0.38 -1.13 16 15 C -0.11 -1.37 5.74 -106.82 -0.61 -1.98 16 16 C -0.06 -0.61 9.90 -39.19 -0.39 -1.00 16 17 C -0.17 -1.74 10.03 -39.79 -0.40 -2.14 16 18 C 0.13 1.73 11.15 -17.44 -0.19 1.54 16 19 N -0.43 -7.73 8.44 -10.76 -0.09 -7.82 16 20 C 0.16 2.62 6.61 -84.58 -0.56 2.06 16 21 C 0.17 4.21 4.86 -3.71 -0.02 4.19 16 22 N -0.58 -14.95 2.99 -164.77 -0.49 -15.45 16 23 C -0.25 -7.08 8.60 -15.06 -0.13 -7.21 16 24 H 0.07 1.92 6.21 -52.49 -0.33 1.59 16 25 C 0.01 0.19 4.96 -17.43 -0.09 0.10 16 26 N -0.90 -27.51 11.14 55.49 0.62 -26.89 16 27 Si 0.90 23.07 29.58 -169.99 -5.03 18.04 16 28 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 29 H -0.29 -7.59 7.11 56.52 0.40 -7.19 16 30 H -0.29 -7.43 7.11 56.52 0.40 -7.03 16 31 H 0.06 1.28 7.62 -51.93 -0.40 0.88 16 32 H 0.04 0.60 8.14 -51.93 -0.42 0.17 16 33 H 0.05 1.06 7.45 -51.93 -0.39 0.67 16 34 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 35 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 36 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 37 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 38 H 0.39 5.25 6.63 -40.82 -0.27 4.98 16 39 H 0.13 1.21 6.37 -52.48 -0.33 0.87 16 40 H 0.13 0.78 8.06 -52.48 -0.42 0.36 16 41 H 0.13 0.79 8.06 -52.48 -0.42 0.37 16 42 H 0.14 0.84 8.06 -52.48 -0.42 0.42 16 43 H 0.14 0.88 8.06 -52.49 -0.42 0.46 16 44 H 0.16 1.75 8.06 -52.49 -0.42 1.32 16 45 H 0.02 0.40 8.14 -51.93 -0.42 -0.03 16 46 H 0.10 2.87 6.06 -51.93 -0.31 2.56 16 47 H 0.25 7.51 8.31 -40.82 -0.34 7.17 16 LS Contribution 376.34 15.07 5.67 5.67 Total: -1.00 -36.86 376.34 -10.81 -47.67 By element: Atomic # 1 Polarization: 11.19 SS G_CDS: -6.63 Total: 4.56 kcal Atomic # 6 Polarization: 3.64 SS G_CDS: -4.66 Total: -1.02 kcal Atomic # 7 Polarization: -62.80 SS G_CDS: -0.24 Total: -63.04 kcal Atomic # 8 Polarization: -11.97 SS G_CDS: 0.08 Total: -11.89 kcal Atomic # 14 Polarization: 23.07 SS G_CDS: -5.03 Total: 18.04 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -36.86 -10.81 -47.67 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071653949.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.873 kcal (2) G-P(sol) polarization free energy of solvation -36.863 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.010 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.810 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.673 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.200 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds