Wall clock time and date at job start Tue Mar 31 2020 22:14:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09002 * 109.69538 * 2 1 4 4 C 1.53191 * 109.58500 * 239.64881 * 2 1 3 5 5 C 1.53048 * 109.30948 * 185.57312 * 4 2 1 6 6 C 1.53350 * 109.60469 * 61.37550 * 5 4 2 7 7 H 1.08999 * 109.47956 * 58.54713 * 6 5 4 8 8 N 1.46501 * 109.68152 * 178.74595 * 6 5 4 9 9 C 1.34783 * 119.99862 * 204.74895 * 8 6 5 10 10 O 1.21603 * 119.99842 * 359.97438 * 9 8 6 11 11 C 1.47427 * 119.99804 * 180.02562 * 9 8 6 12 12 C 1.38749 * 120.33780 * 359.97438 * 11 9 8 13 13 C 1.38861 * 120.72735 * 179.97438 * 12 11 9 14 14 C 1.36347 * 121.06092 * 0.02562 * 13 12 11 15 15 C 1.40443 * 120.08562 * 359.97438 * 14 13 12 16 16 C 1.40802 * 121.26735 * 180.02562 * 15 14 13 17 17 C 1.36636 * 118.15242 * 179.25984 * 16 15 14 18 18 C 1.39239 * 119.90826 * 0.70831 * 17 16 15 19 19 N 1.31231 * 121.69270 * 359.49891 * 18 17 16 20 20 C 1.33350 * 121.35182 * 0.02562 * 19 18 17 21 21 C 1.53190 * 109.15046 * 298.70723 * 6 5 4 22 22 N 1.46924 * 109.58825 * 120.35302 * 2 1 3 23 23 C 1.36932 * 120.63220 * 353.37983 * 22 2 1 24 24 H 1.07998 * 120.00257 * 29.06845 * 23 22 2 25 25 C 1.38815 * 120.00022 * 209.06619 * 23 22 2 26 26 N 1.31620 * 120.00010 * 15.04378 * 25 23 22 27 27 Si 1.86798 * 120.00070 * 195.04313 * 25 23 22 28 28 H 1.48503 * 109.47325 * 359.97438 * 27 25 23 29 29 H 1.48497 * 109.47084 * 120.00070 * 27 25 23 30 30 H 1.48498 * 109.47107 * 240.00011 * 27 25 23 31 31 H 1.09004 * 109.47399 * 299.63889 * 1 2 3 32 32 H 1.08996 * 109.47328 * 59.64426 * 1 2 3 33 33 H 1.09001 * 109.46880 * 179.64614 * 1 2 3 34 34 H 1.08994 * 109.49465 * 305.52505 * 4 2 1 35 35 H 1.08995 * 109.49846 * 65.58924 * 4 2 1 36 36 H 1.08999 * 109.45932 * 181.38026 * 5 4 2 37 37 H 1.08992 * 109.46099 * 301.35627 * 5 4 2 38 38 H 0.97001 * 120.00193 * 24.75382 * 8 6 5 39 39 H 1.08006 * 119.63139 * 359.95669 * 12 11 9 40 40 H 1.08003 * 119.46919 * 180.02562 * 13 12 11 41 41 H 1.08006 * 119.95855 * 180.02562 * 14 13 12 42 42 H 1.08003 * 120.92175 * 359.95228 * 16 15 14 43 43 H 1.08001 * 120.04806 * 180.20990 * 17 16 15 44 44 H 1.07997 * 119.15110 * 179.52979 * 18 17 16 45 45 H 1.09006 * 109.58831 * 294.72750 * 21 6 5 46 46 H 1.09000 * 109.59385 * 174.43893 * 21 6 5 47 47 H 0.96996 * 120.00153 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8974 1.0263 0.0000 4 6 2.0435 -0.7293 -1.2455 5 6 3.5675 -0.8478 -1.1702 6 6 3.9595 -1.6672 0.0653 7 1 3.5009 -2.6543 0.0073 8 7 5.4167 -1.8070 0.1226 9 6 5.9686 -2.8475 0.7780 10 8 5.2569 -3.6698 1.3221 11 6 7.4350 -2.9878 0.8362 12 6 8.2536 -2.0533 0.2183 13 6 9.6357 -2.1774 0.2685 14 6 10.2253 -3.2177 0.9236 15 6 9.4343 -4.1862 1.5628 16 6 10.0169 -5.2703 2.2468 17 6 9.1875 -6.1670 2.8591 18 6 7.8072 -6.0007 2.7822 19 7 7.2692 -4.9910 2.1395 20 6 8.0232 -4.0762 1.5289 21 6 3.4651 -0.9469 1.3236 22 7 2.0226 -0.6995 1.1945 23 6 1.1538 -1.1127 2.1689 24 1 0.1363 -1.3678 1.9124 25 6 1.5811 -1.2037 3.4866 26 7 2.7038 -0.6244 3.8559 27 14 0.5627 -2.1484 4.7355 28 1 -0.6458 -2.7010 4.0726 29 1 1.3726 -3.2599 5.2955 30 1 0.1513 -1.2347 5.8315 31 1 -0.3634 0.5082 0.8932 32 1 -0.3634 0.5193 -0.8867 33 1 -0.3633 -1.0277 -0.0063 34 1 1.6030 -1.7252 -1.2914 35 1 1.7654 -0.1670 -2.1368 36 1 3.9378 -1.3446 -2.0669 37 1 4.0061 0.1475 -1.0992 38 1 5.9844 -1.1508 -0.3110 39 1 7.8107 -1.2204 -0.3077 40 1 10.2536 -1.4379 -0.2193 41 1 11.3022 -3.2965 0.9518 42 1 11.0899 -5.3836 2.2958 43 1 9.6017 -7.0081 3.3953 44 1 7.1629 -6.7210 3.2642 45 1 3.9903 0.0022 1.4316 46 1 3.6521 -1.5695 2.1985 47 1 3.0021 -0.6877 4.7766 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001071653949.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:14:22 Heat of formation + Delta-G solvation = 24.436367 kcal Electronic energy + Delta-G solvation = -29481.573997 eV Core-core repulsion = 25628.865866 eV Total energy + Delta-G solvation = -3852.708131 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -41.96563 -40.61895 -39.14517 -37.89318 -35.95793 -34.67724 -34.41694 -32.51017 -31.77939 -31.47517 -30.78935 -27.77343 -26.83797 -25.54962 -24.45952 -24.34483 -23.84403 -22.16973 -21.42139 -20.85962 -19.21573 -18.79228 -18.34216 -17.84814 -17.24452 -17.01426 -16.56884 -16.04955 -15.74156 -15.67055 -15.47033 -15.16092 -15.08526 -14.89668 -14.85299 -14.46216 -14.12061 -14.04905 -13.85693 -13.50289 -13.10809 -13.02680 -12.80316 -12.73343 -12.70664 -12.56061 -12.30857 -12.26988 -12.12052 -11.98209 -11.67065 -11.49003 -11.41558 -11.14649 -10.96473 -10.56350 -10.10984 -10.03606 -9.80365 -9.27304 -8.64179 -7.86945 -5.33122 -0.81189 -0.16593 0.77928 1.36014 1.41665 1.49152 1.81375 2.14781 2.30713 2.48440 3.17665 3.29763 3.35938 3.53821 3.71078 3.76496 3.87351 3.93328 4.01907 4.04767 4.08814 4.18852 4.26363 4.38827 4.43960 4.51065 4.60517 4.69365 4.70977 4.80756 4.88761 4.92285 4.99089 5.00293 5.05517 5.09595 5.17788 5.21930 5.30101 5.33794 5.36556 5.50110 5.54426 5.58459 5.61340 5.68582 5.81259 5.85804 6.39534 6.67613 7.10571 7.13900 7.42301 7.88996 8.37660 9.17933 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.012387 B = 0.003545 C = 0.002957 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2259.917754 B = 7895.955658 C = 9467.372650 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.153 3.847 3 H 0.024 0.976 4 C -0.118 4.118 5 C -0.106 4.106 6 C 0.134 3.866 7 H 0.044 0.956 8 N -0.708 5.708 9 C 0.539 3.461 10 O -0.555 6.555 11 C -0.153 4.153 12 C -0.046 4.046 13 C -0.127 4.127 14 C -0.055 4.055 15 C -0.131 4.131 16 C -0.047 4.047 17 C -0.176 4.176 18 C 0.112 3.888 19 N -0.507 5.507 20 C 0.127 3.873 21 C 0.182 3.818 22 N -0.604 5.604 23 C -0.248 4.248 24 H 0.076 0.924 25 C -0.056 4.056 26 N -0.935 5.935 27 Si 0.955 3.045 28 H -0.260 1.260 29 H -0.305 1.305 30 H -0.285 1.285 31 H 0.038 0.962 32 H 0.081 0.919 33 H 0.044 0.956 34 H 0.049 0.951 35 H 0.099 0.901 36 H 0.085 0.915 37 H 0.076 0.924 38 H 0.409 0.591 39 H 0.158 0.842 40 H 0.179 0.821 41 H 0.181 0.819 42 H 0.188 0.812 43 H 0.176 0.824 44 H 0.163 0.837 45 H -0.003 1.003 46 H 0.038 0.962 47 H 0.242 0.758 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.604 -3.631 -12.201 24.219 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.048 3.952 3 H 0.042 0.958 4 C -0.157 4.157 5 C -0.144 4.144 6 C 0.027 3.973 7 H 0.062 0.938 8 N -0.361 5.361 9 C 0.327 3.673 10 O -0.433 6.433 11 C -0.157 4.157 12 C -0.066 4.066 13 C -0.145 4.145 14 C -0.073 4.073 15 C -0.133 4.133 16 C -0.073 4.073 17 C -0.196 4.196 18 C -0.059 4.059 19 N -0.215 5.215 20 C 0.005 3.995 21 C 0.055 3.945 22 N -0.328 5.328 23 C -0.379 4.379 24 H 0.094 0.906 25 C -0.250 4.250 26 N -0.581 5.581 27 Si 0.784 3.216 28 H -0.184 1.184 29 H -0.233 1.233 30 H -0.212 1.212 31 H 0.057 0.943 32 H 0.099 0.901 33 H 0.063 0.937 34 H 0.068 0.932 35 H 0.117 0.883 36 H 0.103 0.897 37 H 0.095 0.905 38 H 0.247 0.753 39 H 0.175 0.825 40 H 0.197 0.803 41 H 0.198 0.802 42 H 0.206 0.794 43 H 0.193 0.807 44 H 0.180 0.820 45 H 0.015 0.985 46 H 0.056 0.944 47 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges 19.158 -4.014 -11.777 22.844 hybrid contribution 0.053 -0.455 1.462 1.532 sum 19.210 -4.469 -10.315 22.258 Atomic orbital electron populations 1.21736 0.94690 1.01089 1.01158 1.20825 0.94342 0.93436 0.86601 0.95798 1.21958 0.94519 1.00806 0.98445 1.21696 0.97144 0.99948 0.95565 1.21522 0.79125 0.98801 0.97805 0.93763 1.45783 1.07563 1.27120 1.55651 1.18624 0.88603 0.81495 0.78572 1.90839 1.63883 1.43429 1.45160 1.19995 0.92230 0.98515 1.04912 1.21846 0.94907 0.95888 0.93968 1.21322 0.93396 0.99707 1.00040 1.21716 1.01684 0.91357 0.92581 1.19224 0.92414 0.99388 1.02266 1.22016 1.02489 0.90748 0.92054 1.22282 0.93400 1.02296 1.01599 1.23586 0.95229 0.93863 0.93270 1.68261 1.41070 1.03438 1.08685 1.19041 0.90849 0.93722 0.95929 1.20731 0.83762 0.95083 0.94971 1.44341 1.02492 1.65688 1.20286 1.19533 0.95176 1.36470 0.86711 0.90631 1.25806 0.99016 1.01146 0.99075 1.70170 1.25165 1.46531 1.16272 0.85367 0.78617 0.78009 0.79588 1.18382 1.23259 1.21184 0.94277 0.90066 0.93712 0.93194 0.88267 0.89656 0.90515 0.75341 0.82484 0.80318 0.80195 0.79446 0.80664 0.81989 0.98491 0.94378 0.94867 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.83 7.94 71.98 0.57 -4.25 16 2 C 0.15 6.33 3.50 44.97 0.16 6.49 16 3 H 0.02 1.01 8.14 -2.39 -0.02 0.99 16 4 C -0.12 -3.85 5.37 30.67 0.16 -3.69 16 5 C -0.11 -3.31 5.37 30.73 0.17 -3.15 16 6 C 0.13 5.70 2.62 45.17 0.12 5.81 16 7 H 0.04 2.22 7.58 -2.39 -0.02 2.20 16 8 N -0.71 -25.96 5.04 -444.93 -2.24 -28.20 16 9 C 0.54 23.25 7.73 86.66 0.67 23.92 16 10 O -0.56 -30.61 14.85 -4.04 -0.06 -30.67 16 11 C -0.15 -5.19 5.91 -19.86 -0.12 -5.30 16 12 C -0.05 -0.99 9.52 22.54 0.21 -0.77 16 13 C -0.13 -1.78 9.93 21.98 0.22 -1.56 16 14 C -0.05 -0.78 9.75 22.37 0.22 -0.56 16 15 C -0.13 -2.98 5.74 -21.29 -0.12 -3.10 16 16 C -0.05 -0.78 9.90 22.52 0.22 -0.55 16 17 C -0.18 -3.29 10.03 22.14 0.22 -3.07 16 18 C 0.11 3.25 11.15 85.02 0.95 4.20 16 19 N -0.51 -20.12 8.44 -187.96 -1.59 -21.70 16 20 C 0.13 4.39 6.61 40.61 0.27 4.66 16 21 C 0.18 9.76 4.86 86.36 0.42 10.18 16 22 N -0.60 -32.23 2.99 -675.22 -2.02 -34.26 16 23 C -0.25 -14.62 8.60 84.04 0.72 -13.90 16 24 H 0.08 4.27 6.21 -2.91 -0.02 4.25 16 25 C -0.06 -3.43 4.96 84.86 0.42 -3.01 16 26 N -0.93 -61.23 11.14 21.65 0.24 -60.99 16 27 Si 0.96 50.07 29.58 68.60 2.03 52.10 16 28 H -0.26 -12.71 7.11 99.48 0.71 -12.00 16 29 H -0.30 -16.64 7.11 99.48 0.71 -15.94 16 30 H -0.29 -14.49 7.11 99.48 0.71 -13.79 16 31 H 0.04 1.60 7.62 -2.38 -0.02 1.59 16 32 H 0.08 2.31 8.14 -2.39 -0.02 2.30 16 33 H 0.04 1.72 7.45 -2.39 -0.02 1.71 16 34 H 0.05 1.76 8.14 -2.39 -0.02 1.74 16 35 H 0.10 2.44 8.14 -2.39 -0.02 2.42 16 36 H 0.08 2.17 8.14 -2.39 -0.02 2.15 16 37 H 0.08 2.17 8.14 -2.39 -0.02 2.15 16 38 H 0.41 10.93 6.63 -92.71 -0.61 10.31 16 39 H 0.16 2.42 6.37 -2.91 -0.02 2.41 16 40 H 0.18 0.91 8.06 -2.91 -0.02 0.89 16 41 H 0.18 0.82 8.06 -2.91 -0.02 0.79 16 42 H 0.19 1.12 8.06 -2.91 -0.02 1.10 16 43 H 0.18 1.76 8.06 -2.91 -0.02 1.73 16 44 H 0.16 4.10 8.06 -2.91 -0.02 4.08 16 45 H 0.00 -0.16 8.14 -2.38 -0.02 -0.18 16 46 H 0.04 2.49 6.06 -2.39 -0.01 2.47 16 47 H 0.24 15.59 8.31 -92.71 -0.77 14.82 16 Total: -1.00 -95.41 376.34 2.22 -93.19 By element: Atomic # 1 Polarization: 17.81 SS G_CDS: 0.38 Total: 18.19 kcal Atomic # 6 Polarization: 6.85 SS G_CDS: 5.48 Total: 12.34 kcal Atomic # 7 Polarization: -139.54 SS G_CDS: -5.61 Total: -145.14 kcal Atomic # 8 Polarization: -30.61 SS G_CDS: -0.06 Total: -30.67 kcal Atomic # 14 Polarization: 50.07 SS G_CDS: 2.03 Total: 52.10 kcal Total: -95.41 2.22 -93.19 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071653949.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.627 kcal (2) G-P(sol) polarization free energy of solvation -95.413 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.214 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.222 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -93.191 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.436 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds