Wall clock time and date at job start Tue Mar 31 2020 22:14:22
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52999 * 1
3 3 H 1.09002 * 109.69538 * 2 1
4 4 C 1.53191 * 109.58500 * 239.64881 * 2 1 3
5 5 C 1.53048 * 109.30948 * 185.57312 * 4 2 1
6 6 C 1.53350 * 109.60469 * 61.37550 * 5 4 2
7 7 H 1.08999 * 109.47956 * 58.54713 * 6 5 4
8 8 N 1.46501 * 109.68152 * 178.74595 * 6 5 4
9 9 C 1.34783 * 119.99862 * 204.74895 * 8 6 5
10 10 O 1.21603 * 119.99842 * 359.97438 * 9 8 6
11 11 C 1.47427 * 119.99804 * 180.02562 * 9 8 6
12 12 C 1.38749 * 120.33780 * 359.97438 * 11 9 8
13 13 C 1.38861 * 120.72735 * 179.97438 * 12 11 9
14 14 C 1.36347 * 121.06092 * 0.02562 * 13 12 11
15 15 C 1.40443 * 120.08562 * 359.97438 * 14 13 12
16 16 C 1.40802 * 121.26735 * 180.02562 * 15 14 13
17 17 C 1.36636 * 118.15242 * 179.25984 * 16 15 14
18 18 C 1.39239 * 119.90826 * 0.70831 * 17 16 15
19 19 N 1.31231 * 121.69270 * 359.49891 * 18 17 16
20 20 C 1.33350 * 121.35182 * 0.02562 * 19 18 17
21 21 C 1.53190 * 109.15046 * 298.70723 * 6 5 4
22 22 N 1.46924 * 109.58825 * 120.35302 * 2 1 3
23 23 C 1.36932 * 120.63220 * 353.37983 * 22 2 1
24 24 H 1.07998 * 120.00257 * 29.06845 * 23 22 2
25 25 C 1.38815 * 120.00022 * 209.06619 * 23 22 2
26 26 N 1.31620 * 120.00010 * 15.04378 * 25 23 22
27 27 Si 1.86798 * 120.00070 * 195.04313 * 25 23 22
28 28 H 1.48503 * 109.47325 * 359.97438 * 27 25 23
29 29 H 1.48497 * 109.47084 * 120.00070 * 27 25 23
30 30 H 1.48498 * 109.47107 * 240.00011 * 27 25 23
31 31 H 1.09004 * 109.47399 * 299.63889 * 1 2 3
32 32 H 1.08996 * 109.47328 * 59.64426 * 1 2 3
33 33 H 1.09001 * 109.46880 * 179.64614 * 1 2 3
34 34 H 1.08994 * 109.49465 * 305.52505 * 4 2 1
35 35 H 1.08995 * 109.49846 * 65.58924 * 4 2 1
36 36 H 1.08999 * 109.45932 * 181.38026 * 5 4 2
37 37 H 1.08992 * 109.46099 * 301.35627 * 5 4 2
38 38 H 0.97001 * 120.00193 * 24.75382 * 8 6 5
39 39 H 1.08006 * 119.63139 * 359.95669 * 12 11 9
40 40 H 1.08003 * 119.46919 * 180.02562 * 13 12 11
41 41 H 1.08006 * 119.95855 * 180.02562 * 14 13 12
42 42 H 1.08003 * 120.92175 * 359.95228 * 16 15 14
43 43 H 1.08001 * 120.04806 * 180.20990 * 17 16 15
44 44 H 1.07997 * 119.15110 * 179.52979 * 18 17 16
45 45 H 1.09006 * 109.58831 * 294.72750 * 21 6 5
46 46 H 1.09000 * 109.59385 * 174.43893 * 21 6 5
47 47 H 0.96996 * 120.00153 * 179.97438 * 26 25 23
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8974 1.0263 0.0000
4 6 2.0435 -0.7293 -1.2455
5 6 3.5675 -0.8478 -1.1702
6 6 3.9595 -1.6672 0.0653
7 1 3.5009 -2.6543 0.0073
8 7 5.4167 -1.8070 0.1226
9 6 5.9686 -2.8475 0.7780
10 8 5.2569 -3.6698 1.3221
11 6 7.4350 -2.9878 0.8362
12 6 8.2536 -2.0533 0.2183
13 6 9.6357 -2.1774 0.2685
14 6 10.2253 -3.2177 0.9236
15 6 9.4343 -4.1862 1.5628
16 6 10.0169 -5.2703 2.2468
17 6 9.1875 -6.1670 2.8591
18 6 7.8072 -6.0007 2.7822
19 7 7.2692 -4.9910 2.1395
20 6 8.0232 -4.0762 1.5289
21 6 3.4651 -0.9469 1.3236
22 7 2.0226 -0.6995 1.1945
23 6 1.1538 -1.1127 2.1689
24 1 0.1363 -1.3678 1.9124
25 6 1.5811 -1.2037 3.4866
26 7 2.7038 -0.6244 3.8559
27 14 0.5627 -2.1484 4.7355
28 1 -0.6458 -2.7010 4.0726
29 1 1.3726 -3.2599 5.2955
30 1 0.1513 -1.2347 5.8315
31 1 -0.3634 0.5082 0.8932
32 1 -0.3634 0.5193 -0.8867
33 1 -0.3633 -1.0277 -0.0063
34 1 1.6030 -1.7252 -1.2914
35 1 1.7654 -0.1670 -2.1368
36 1 3.9378 -1.3446 -2.0669
37 1 4.0061 0.1475 -1.0992
38 1 5.9844 -1.1508 -0.3110
39 1 7.8107 -1.2204 -0.3077
40 1 10.2536 -1.4379 -0.2193
41 1 11.3022 -3.2965 0.9518
42 1 11.0899 -5.3836 2.2958
43 1 9.6017 -7.0081 3.3953
44 1 7.1629 -6.7210 3.2642
45 1 3.9903 0.0022 1.4316
46 1 3.6521 -1.5695 2.1985
47 1 3.0021 -0.6877 4.7766
RHF calculation, no. of doubly occupied orbitals= 63
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001071653949.mol2 47
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 22:14:22
Heat of formation + Delta-G solvation = 24.436367 kcal
Electronic energy + Delta-G solvation = -29481.573997 eV
Core-core repulsion = 25628.865866 eV
Total energy + Delta-G solvation = -3852.708131 eV
No. of doubly occupied orbitals = 63
Molecular weight
(most abundant/longest-lived isotopes) = 339.169 amu
Computer time = 1.21 seconds
Orbital eigenvalues (eV)
-41.96563 -40.61895 -39.14517 -37.89318 -35.95793 -34.67724 -34.41694 -32.51017
-31.77939 -31.47517 -30.78935 -27.77343 -26.83797 -25.54962 -24.45952 -24.34483
-23.84403 -22.16973 -21.42139 -20.85962 -19.21573 -18.79228 -18.34216 -17.84814
-17.24452 -17.01426 -16.56884 -16.04955 -15.74156 -15.67055 -15.47033 -15.16092
-15.08526 -14.89668 -14.85299 -14.46216 -14.12061 -14.04905 -13.85693 -13.50289
-13.10809 -13.02680 -12.80316 -12.73343 -12.70664 -12.56061 -12.30857 -12.26988
-12.12052 -11.98209 -11.67065 -11.49003 -11.41558 -11.14649 -10.96473 -10.56350
-10.10984 -10.03606 -9.80365 -9.27304 -8.64179 -7.86945 -5.33122 -0.81189
-0.16593 0.77928 1.36014 1.41665 1.49152 1.81375 2.14781 2.30713
2.48440 3.17665 3.29763 3.35938 3.53821 3.71078 3.76496 3.87351
3.93328 4.01907 4.04767 4.08814 4.18852 4.26363 4.38827 4.43960
4.51065 4.60517 4.69365 4.70977 4.80756 4.88761 4.92285 4.99089
5.00293 5.05517 5.09595 5.17788 5.21930 5.30101 5.33794 5.36556
5.50110 5.54426 5.58459 5.61340 5.68582 5.81259 5.85804 6.39534
6.67613 7.10571 7.13900 7.42301 7.88996 8.37660 9.17933
Molecular weight = 339.17amu
Principal moments of inertia in cm(-1)
A = 0.012387 B = 0.003545 C = 0.002957
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2259.917754 B = 7895.955658 C = 9467.372650
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.129 4.129
2 C 0.153 3.847
3 H 0.024 0.976
4 C -0.118 4.118
5 C -0.106 4.106
6 C 0.134 3.866
7 H 0.044 0.956
8 N -0.708 5.708
9 C 0.539 3.461
10 O -0.555 6.555
11 C -0.153 4.153
12 C -0.046 4.046
13 C -0.127 4.127
14 C -0.055 4.055
15 C -0.131 4.131
16 C -0.047 4.047
17 C -0.176 4.176
18 C 0.112 3.888
19 N -0.507 5.507
20 C 0.127 3.873
21 C 0.182 3.818
22 N -0.604 5.604
23 C -0.248 4.248
24 H 0.076 0.924
25 C -0.056 4.056
26 N -0.935 5.935
27 Si 0.955 3.045
28 H -0.260 1.260
29 H -0.305 1.305
30 H -0.285 1.285
31 H 0.038 0.962
32 H 0.081 0.919
33 H 0.044 0.956
34 H 0.049 0.951
35 H 0.099 0.901
36 H 0.085 0.915
37 H 0.076 0.924
38 H 0.409 0.591
39 H 0.158 0.842
40 H 0.179 0.821
41 H 0.181 0.819
42 H 0.188 0.812
43 H 0.176 0.824
44 H 0.163 0.837
45 H -0.003 1.003
46 H 0.038 0.962
47 H 0.242 0.758
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 20.604 -3.631 -12.201 24.219
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.187 4.187
2 C 0.048 3.952
3 H 0.042 0.958
4 C -0.157 4.157
5 C -0.144 4.144
6 C 0.027 3.973
7 H 0.062 0.938
8 N -0.361 5.361
9 C 0.327 3.673
10 O -0.433 6.433
11 C -0.157 4.157
12 C -0.066 4.066
13 C -0.145 4.145
14 C -0.073 4.073
15 C -0.133 4.133
16 C -0.073 4.073
17 C -0.196 4.196
18 C -0.059 4.059
19 N -0.215 5.215
20 C 0.005 3.995
21 C 0.055 3.945
22 N -0.328 5.328
23 C -0.379 4.379
24 H 0.094 0.906
25 C -0.250 4.250
26 N -0.581 5.581
27 Si 0.784 3.216
28 H -0.184 1.184
29 H -0.233 1.233
30 H -0.212 1.212
31 H 0.057 0.943
32 H 0.099 0.901
33 H 0.063 0.937
34 H 0.068 0.932
35 H 0.117 0.883
36 H 0.103 0.897
37 H 0.095 0.905
38 H 0.247 0.753
39 H 0.175 0.825
40 H 0.197 0.803
41 H 0.198 0.802
42 H 0.206 0.794
43 H 0.193 0.807
44 H 0.180 0.820
45 H 0.015 0.985
46 H 0.056 0.944
47 H 0.051 0.949
Dipole moment (debyes) X Y Z Total
from point charges 19.158 -4.014 -11.777 22.844
hybrid contribution 0.053 -0.455 1.462 1.532
sum 19.210 -4.469 -10.315 22.258
Atomic orbital electron populations
1.21736 0.94690 1.01089 1.01158 1.20825 0.94342 0.93436 0.86601
0.95798 1.21958 0.94519 1.00806 0.98445 1.21696 0.97144 0.99948
0.95565 1.21522 0.79125 0.98801 0.97805 0.93763 1.45783 1.07563
1.27120 1.55651 1.18624 0.88603 0.81495 0.78572 1.90839 1.63883
1.43429 1.45160 1.19995 0.92230 0.98515 1.04912 1.21846 0.94907
0.95888 0.93968 1.21322 0.93396 0.99707 1.00040 1.21716 1.01684
0.91357 0.92581 1.19224 0.92414 0.99388 1.02266 1.22016 1.02489
0.90748 0.92054 1.22282 0.93400 1.02296 1.01599 1.23586 0.95229
0.93863 0.93270 1.68261 1.41070 1.03438 1.08685 1.19041 0.90849
0.93722 0.95929 1.20731 0.83762 0.95083 0.94971 1.44341 1.02492
1.65688 1.20286 1.19533 0.95176 1.36470 0.86711 0.90631 1.25806
0.99016 1.01146 0.99075 1.70170 1.25165 1.46531 1.16272 0.85367
0.78617 0.78009 0.79588 1.18382 1.23259 1.21184 0.94277 0.90066
0.93712 0.93194 0.88267 0.89656 0.90515 0.75341 0.82484 0.80318
0.80195 0.79446 0.80664 0.81989 0.98491 0.94378 0.94867
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 17.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.13 -4.83 7.94 71.98 0.57 -4.25 16
2 C 0.15 6.33 3.50 44.97 0.16 6.49 16
3 H 0.02 1.01 8.14 -2.39 -0.02 0.99 16
4 C -0.12 -3.85 5.37 30.67 0.16 -3.69 16
5 C -0.11 -3.31 5.37 30.73 0.17 -3.15 16
6 C 0.13 5.70 2.62 45.17 0.12 5.81 16
7 H 0.04 2.22 7.58 -2.39 -0.02 2.20 16
8 N -0.71 -25.96 5.04 -444.93 -2.24 -28.20 16
9 C 0.54 23.25 7.73 86.66 0.67 23.92 16
10 O -0.56 -30.61 14.85 -4.04 -0.06 -30.67 16
11 C -0.15 -5.19 5.91 -19.86 -0.12 -5.30 16
12 C -0.05 -0.99 9.52 22.54 0.21 -0.77 16
13 C -0.13 -1.78 9.93 21.98 0.22 -1.56 16
14 C -0.05 -0.78 9.75 22.37 0.22 -0.56 16
15 C -0.13 -2.98 5.74 -21.29 -0.12 -3.10 16
16 C -0.05 -0.78 9.90 22.52 0.22 -0.55 16
17 C -0.18 -3.29 10.03 22.14 0.22 -3.07 16
18 C 0.11 3.25 11.15 85.02 0.95 4.20 16
19 N -0.51 -20.12 8.44 -187.96 -1.59 -21.70 16
20 C 0.13 4.39 6.61 40.61 0.27 4.66 16
21 C 0.18 9.76 4.86 86.36 0.42 10.18 16
22 N -0.60 -32.23 2.99 -675.22 -2.02 -34.26 16
23 C -0.25 -14.62 8.60 84.04 0.72 -13.90 16
24 H 0.08 4.27 6.21 -2.91 -0.02 4.25 16
25 C -0.06 -3.43 4.96 84.86 0.42 -3.01 16
26 N -0.93 -61.23 11.14 21.65 0.24 -60.99 16
27 Si 0.96 50.07 29.58 68.60 2.03 52.10 16
28 H -0.26 -12.71 7.11 99.48 0.71 -12.00 16
29 H -0.30 -16.64 7.11 99.48 0.71 -15.94 16
30 H -0.29 -14.49 7.11 99.48 0.71 -13.79 16
31 H 0.04 1.60 7.62 -2.38 -0.02 1.59 16
32 H 0.08 2.31 8.14 -2.39 -0.02 2.30 16
33 H 0.04 1.72 7.45 -2.39 -0.02 1.71 16
34 H 0.05 1.76 8.14 -2.39 -0.02 1.74 16
35 H 0.10 2.44 8.14 -2.39 -0.02 2.42 16
36 H 0.08 2.17 8.14 -2.39 -0.02 2.15 16
37 H 0.08 2.17 8.14 -2.39 -0.02 2.15 16
38 H 0.41 10.93 6.63 -92.71 -0.61 10.31 16
39 H 0.16 2.42 6.37 -2.91 -0.02 2.41 16
40 H 0.18 0.91 8.06 -2.91 -0.02 0.89 16
41 H 0.18 0.82 8.06 -2.91 -0.02 0.79 16
42 H 0.19 1.12 8.06 -2.91 -0.02 1.10 16
43 H 0.18 1.76 8.06 -2.91 -0.02 1.73 16
44 H 0.16 4.10 8.06 -2.91 -0.02 4.08 16
45 H 0.00 -0.16 8.14 -2.38 -0.02 -0.18 16
46 H 0.04 2.49 6.06 -2.39 -0.01 2.47 16
47 H 0.24 15.59 8.31 -92.71 -0.77 14.82 16
Total: -1.00 -95.41 376.34 2.22 -93.19
By element:
Atomic # 1 Polarization: 17.81 SS G_CDS: 0.38 Total: 18.19 kcal
Atomic # 6 Polarization: 6.85 SS G_CDS: 5.48 Total: 12.34 kcal
Atomic # 7 Polarization: -139.54 SS G_CDS: -5.61 Total: -145.14 kcal
Atomic # 8 Polarization: -30.61 SS G_CDS: -0.06 Total: -30.67 kcal
Atomic # 14 Polarization: 50.07 SS G_CDS: 2.03 Total: 52.10 kcal
Total: -95.41 2.22 -93.19 kcal
The number of atoms in the molecule is 47
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001071653949.mol2 47
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 117.627 kcal
(2) G-P(sol) polarization free energy of solvation -95.413 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.214 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.222 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -93.191 kcal
(6) G-S(sol) free energy of system = (1) + (5) 24.436 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.21 seconds