Wall clock time and date at job start Tue Mar 31 2020 22:14:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09003 * 109.58498 * 2 1 4 4 C 1.53194 * 109.59307 * 120.28765 * 2 1 3 5 5 C 1.53039 * 109.31328 * 174.42340 * 4 2 1 6 6 C 1.53040 * 109.53994 * 298.63236 * 5 4 2 7 7 H 1.08998 * 109.49724 * 301.38795 * 6 5 4 8 8 N 1.46493 * 109.49891 * 181.31843 * 6 5 4 9 9 C 1.34778 * 120.00063 * 155.06578 * 8 6 5 10 10 O 1.21605 * 119.99933 * 359.97438 * 9 8 6 11 11 C 1.47432 * 120.00088 * 180.02562 * 9 8 6 12 12 C 1.38740 * 120.33221 * 359.97438 * 11 9 8 13 13 C 1.38870 * 120.73112 * 180.29674 * 12 11 9 14 14 C 1.36359 * 121.05213 * 359.41764 * 13 12 11 15 15 C 1.40434 * 120.08023 * 0.59735 * 14 13 12 16 16 C 1.40805 * 121.25423 * 179.70180 * 15 14 13 17 17 C 1.36640 * 118.15611 * 179.97438 * 16 15 14 18 18 C 1.39231 * 119.90202 * 0.02562 * 17 16 15 19 19 N 1.31231 * 121.70194 * 359.97438 * 18 17 16 20 20 C 1.33347 * 121.35066 * 0.03708 * 19 18 17 21 21 C 1.53189 * 109.33853 * 61.34988 * 6 5 4 22 22 N 1.46929 * 109.58552 * 239.57662 * 2 1 3 23 23 C 1.36939 * 120.63083 * 6.60103 * 22 2 1 24 24 H 1.08000 * 119.99711 * 330.15714 * 23 22 2 25 25 C 1.38814 * 119.99816 * 150.15478 * 23 22 2 26 26 N 1.31618 * 120.00222 * 344.50819 * 25 23 22 27 27 Si 1.86799 * 119.99667 * 164.50391 * 25 23 22 28 28 H 1.48506 * 109.46955 * 60.00181 * 27 25 23 29 29 H 1.48497 * 109.47329 * 180.02562 * 27 25 23 30 30 H 1.48493 * 109.47324 * 300.00231 * 27 25 23 31 31 H 1.08998 * 109.47024 * 299.71093 * 1 2 3 32 32 H 1.08992 * 109.47748 * 59.71473 * 1 2 3 33 33 H 1.08999 * 109.46885 * 179.71629 * 1 2 3 34 34 H 1.08997 * 109.49400 * 54.46967 * 4 2 1 35 35 H 1.08997 * 109.49202 * 294.37150 * 4 2 1 36 36 H 1.08998 * 109.45863 * 178.61183 * 5 4 2 37 37 H 1.08998 * 109.44923 * 58.65188 * 5 4 2 38 38 H 0.96998 * 120.00271 * 335.06740 * 8 6 5 39 39 H 1.07998 * 119.63691 * 0.02562 * 12 11 9 40 40 H 1.07995 * 119.47429 * 179.72168 * 13 12 11 41 41 H 1.08001 * 119.95787 * 180.28219 * 14 13 12 42 42 H 1.07996 * 120.92667 * 359.96078 * 16 15 14 43 43 H 1.07993 * 120.04998 * 179.97438 * 17 16 15 44 44 H 1.08010 * 119.14744 * 179.97438 * 18 17 16 45 45 H 1.09002 * 109.58512 * 65.16620 * 21 6 5 46 46 H 1.08995 * 109.58891 * 185.59620 * 21 6 5 47 47 H 0.96998 * 119.99758 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8953 1.0270 0.0000 4 6 2.0437 -0.7279 1.2462 5 6 3.5676 -0.8465 1.1710 6 6 3.9570 -1.6657 -0.0616 7 1 3.4989 -2.6529 -0.0020 8 7 5.4143 -1.8053 -0.1156 9 6 5.9678 -2.8481 -0.7656 10 8 5.2574 -3.6735 -1.3070 11 6 7.4344 -2.9889 -0.8194 12 6 8.2513 -2.0517 -0.2038 13 6 9.6337 -2.1729 -0.2545 14 6 10.2249 -3.2193 -0.8986 15 6 9.4354 -4.1904 -1.5356 16 6 10.0199 -5.2777 -2.2131 17 6 9.1918 -6.1858 -2.8102 18 6 7.8114 -6.0190 -2.7377 19 7 7.2717 -5.0039 -2.1050 20 6 8.0241 -4.0830 -1.5018 21 6 3.4650 -0.9492 -1.3231 22 7 2.0225 -0.7010 -1.1937 23 6 1.1536 -1.1157 -2.1674 24 1 0.1397 -1.3827 -1.9083 25 6 1.5760 -1.1929 -3.4875 26 7 2.6866 -0.5925 -3.8593 27 14 0.5681 -2.1492 -4.7362 28 1 -0.7925 -1.5613 -4.8286 29 1 1.2293 -2.0793 -6.0640 30 1 0.4664 -3.5675 -4.3085 31 1 -0.3633 0.5093 0.8926 32 1 -0.3634 0.5182 -0.8873 33 1 -0.3633 -1.0277 -0.0051 34 1 1.6031 -1.7237 1.2933 35 1 1.7662 -0.1642 2.1369 36 1 3.9380 -1.3422 2.0683 37 1 4.0060 0.1489 1.0989 38 1 5.9809 -1.1472 0.3165 39 1 7.8073 -1.2162 0.3170 40 1 10.2504 -1.4291 0.2280 41 1 11.3017 -3.2986 -0.9232 42 1 11.0929 -5.3906 -2.2596 43 1 9.6073 -7.0311 -3.3384 44 1 7.1682 -6.7440 -3.2145 45 1 3.9901 -0.0003 -1.4327 46 1 3.6516 -1.5755 -2.1954 47 1 2.9816 -0.6461 -4.7818 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001071653950.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:14:27 Heat of formation + Delta-G solvation = 49.984261 kcal Electronic energy + Delta-G solvation = -29474.347749 eV Core-core repulsion = 25622.747458 eV Total energy + Delta-G solvation = -3851.600291 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -40.99268 -39.15980 -37.54234 -36.90891 -34.27837 -33.47316 -32.73545 -31.14233 -30.57897 -29.92973 -29.54279 -26.02349 -25.02751 -24.54081 -23.54938 -23.11755 -22.15560 -20.62507 -19.94996 -19.20655 -18.31635 -17.66097 -16.89979 -16.30889 -15.98554 -15.44345 -15.01572 -14.79319 -14.65137 -14.08326 -13.99198 -13.89944 -13.70860 -13.57852 -13.29669 -13.10036 -13.03656 -12.61550 -12.34949 -12.19709 -11.85233 -11.76223 -11.49604 -11.37134 -11.05490 -10.82593 -10.62946 -10.58390 -10.41435 -10.33428 -10.19683 -9.90330 -9.74608 -9.52460 -9.36663 -8.93425 -8.93019 -8.46593 -8.33510 -8.27956 -6.52168 -5.65967 -3.10733 0.07943 0.70214 1.70255 2.69215 3.46911 3.52400 3.54736 3.57212 3.59075 4.18802 4.23386 4.42802 4.58562 4.61093 4.68711 4.74471 4.90338 4.98114 5.13557 5.33018 5.41974 5.44464 5.50162 5.60662 5.65461 5.73311 5.74682 5.80418 5.90514 6.04245 6.04367 6.16477 6.17308 6.32781 6.33562 6.39664 6.45642 6.52289 6.58907 6.66210 6.69412 6.82922 7.06908 7.11304 7.19296 7.41701 7.83778 7.93499 7.98300 8.09921 8.58864 8.83494 9.32901 9.97347 10.52869 11.42121 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.012388 B = 0.003537 C = 0.002955 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2259.619051 B = 7913.634721 C = 9473.409090 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.165 3.835 3 H 0.024 0.976 4 C -0.126 4.126 5 C -0.116 4.116 6 C 0.119 3.881 7 H 0.082 0.918 8 N -0.721 5.721 9 C 0.545 3.455 10 O -0.488 6.488 11 C -0.094 4.094 12 C -0.070 4.070 13 C -0.123 4.123 14 C -0.079 4.079 15 C -0.111 4.111 16 C -0.063 4.063 17 C -0.175 4.175 18 C 0.129 3.871 19 N -0.430 5.430 20 C 0.160 3.840 21 C 0.170 3.830 22 N -0.583 5.583 23 C -0.255 4.255 24 H 0.069 0.931 25 C 0.008 3.992 26 N -0.900 5.900 27 Si 0.900 3.100 28 H -0.283 1.283 29 H -0.291 1.291 30 H -0.282 1.282 31 H 0.037 0.963 32 H 0.061 0.939 33 H 0.053 0.947 34 H 0.061 0.939 35 H 0.054 0.946 36 H 0.050 0.950 37 H 0.058 0.942 38 H 0.388 0.612 39 H 0.135 0.865 40 H 0.133 0.867 41 H 0.132 0.868 42 H 0.138 0.862 43 H 0.137 0.863 44 H 0.160 0.840 45 H 0.016 0.984 46 H 0.093 0.907 47 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.321 -4.564 9.352 20.206 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.059 3.941 3 H 0.042 0.958 4 C -0.166 4.166 5 C -0.154 4.154 6 C 0.014 3.986 7 H 0.100 0.900 8 N -0.373 5.373 9 C 0.330 3.670 10 O -0.361 6.361 11 C -0.098 4.098 12 C -0.091 4.091 13 C -0.141 4.141 14 C -0.098 4.098 15 C -0.113 4.113 16 C -0.089 4.089 17 C -0.195 4.195 18 C -0.044 4.044 19 N -0.137 5.137 20 C 0.037 3.963 21 C 0.043 3.957 22 N -0.306 5.306 23 C -0.384 4.384 24 H 0.086 0.914 25 C -0.191 4.191 26 N -0.543 5.543 27 Si 0.730 3.270 28 H -0.210 1.210 29 H -0.217 1.217 30 H -0.209 1.209 31 H 0.056 0.944 32 H 0.080 0.920 33 H 0.072 0.928 34 H 0.079 0.921 35 H 0.072 0.928 36 H 0.069 0.931 37 H 0.076 0.924 38 H 0.221 0.779 39 H 0.152 0.848 40 H 0.151 0.849 41 H 0.149 0.851 42 H 0.156 0.844 43 H 0.154 0.846 44 H 0.177 0.823 45 H 0.034 0.966 46 H 0.111 0.889 47 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 15.881 -4.976 8.855 18.852 hybrid contribution 0.963 -0.196 -0.606 1.154 sum 16.844 -5.172 8.249 19.456 Atomic orbital electron populations 1.21797 0.96050 1.01414 1.00100 1.20479 0.93030 0.93507 0.87111 0.95838 1.22046 0.94339 1.01319 0.98881 1.21677 0.97386 0.99574 0.96770 1.21955 0.77638 1.00871 0.98118 0.89984 1.46017 1.08511 1.26656 1.56141 1.17847 0.86693 0.82363 0.80085 1.90895 1.61995 1.40894 1.42335 1.20149 0.94443 0.95190 1.00038 1.21454 0.93682 0.97383 0.96546 1.20820 0.94508 0.98616 1.00186 1.21103 0.99627 0.93308 0.95804 1.18838 0.93978 0.97400 1.01104 1.21422 1.00277 0.92576 0.94631 1.21968 0.95228 1.00770 1.01493 1.23222 0.92815 0.94616 0.93712 1.68379 1.38346 1.01046 1.05902 1.18670 0.88679 0.93634 0.95306 1.21066 0.83460 0.96802 0.94410 1.44014 1.02661 1.64620 1.19349 1.19076 0.95063 1.38258 0.86010 0.91350 1.25071 0.97751 0.99219 0.97035 1.69991 1.24060 1.43561 1.16714 0.86415 0.79371 0.80558 0.80695 1.20975 1.21739 1.20871 0.94409 0.92034 0.92789 0.92071 0.92750 0.93127 0.92355 0.77872 0.84761 0.84925 0.85059 0.84422 0.84551 0.82308 0.96615 0.88871 0.93731 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.62 7.95 37.15 0.30 -2.33 16 2 C 0.17 3.47 3.50 -67.60 -0.24 3.24 16 3 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 4 C -0.13 -2.21 5.37 -26.61 -0.14 -2.35 16 5 C -0.12 -1.93 5.35 -26.69 -0.14 -2.07 16 6 C 0.12 2.42 2.60 -67.82 -0.18 2.25 16 7 H 0.08 1.91 7.58 -51.93 -0.39 1.51 16 8 N -0.72 -12.58 5.03 -54.77 -0.28 -12.86 16 9 C 0.55 10.74 7.73 -12.52 -0.10 10.65 16 10 O -0.49 -11.94 14.85 5.27 0.08 -11.87 16 11 C -0.09 -1.52 5.91 -104.61 -0.62 -2.14 16 12 C -0.07 -0.81 9.52 -39.16 -0.37 -1.18 16 13 C -0.12 -1.13 9.93 -40.02 -0.40 -1.53 16 14 C -0.08 -0.75 9.75 -39.43 -0.38 -1.13 16 15 C -0.11 -1.36 5.74 -106.83 -0.61 -1.98 16 16 C -0.06 -0.61 9.90 -39.19 -0.39 -1.00 16 17 C -0.17 -1.73 10.03 -39.79 -0.40 -2.13 16 18 C 0.13 1.72 11.15 -17.44 -0.19 1.53 16 19 N -0.43 -7.70 8.44 -10.76 -0.09 -7.79 16 20 C 0.16 2.61 6.61 -84.58 -0.56 2.05 16 21 C 0.17 4.25 4.86 -3.70 -0.02 4.24 16 22 N -0.58 -14.94 2.99 -164.76 -0.49 -15.43 16 23 C -0.25 -7.17 8.58 -15.06 -0.13 -7.30 16 24 H 0.07 1.87 6.23 -52.49 -0.33 1.54 16 25 C 0.01 0.24 4.94 -17.43 -0.09 0.16 16 26 N -0.90 -27.47 11.23 55.49 0.62 -26.85 16 27 Si 0.90 23.07 29.58 -169.99 -5.03 18.04 16 28 H -0.28 -7.03 7.11 56.52 0.40 -6.63 16 29 H -0.29 -7.54 7.11 56.52 0.40 -7.14 16 30 H -0.28 -7.29 7.11 56.52 0.40 -6.89 16 31 H 0.04 0.60 8.14 -51.93 -0.42 0.17 16 32 H 0.06 1.28 7.67 -51.93 -0.40 0.88 16 33 H 0.05 1.06 7.40 -51.93 -0.38 0.68 16 34 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 35 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 36 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 37 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 38 H 0.39 5.24 6.63 -40.82 -0.27 4.97 16 39 H 0.13 1.20 6.37 -52.49 -0.33 0.87 16 40 H 0.13 0.78 8.06 -52.49 -0.42 0.36 16 41 H 0.13 0.79 8.06 -52.49 -0.42 0.36 16 42 H 0.14 0.83 8.06 -52.49 -0.42 0.41 16 43 H 0.14 0.87 8.06 -52.49 -0.42 0.45 16 44 H 0.16 1.73 8.06 -52.48 -0.42 1.31 16 45 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 46 H 0.09 2.78 6.15 -51.93 -0.32 2.46 16 47 H 0.25 7.57 8.31 -40.82 -0.34 7.23 16 LS Contribution 376.45 15.07 5.67 5.67 Total: -1.00 -36.79 376.45 -10.81 -47.60 By element: Atomic # 1 Polarization: 11.14 SS G_CDS: -6.64 Total: 4.50 kcal Atomic # 6 Polarization: 3.64 SS G_CDS: -4.66 Total: -1.02 kcal Atomic # 7 Polarization: -62.69 SS G_CDS: -0.23 Total: -62.93 kcal Atomic # 8 Polarization: -11.94 SS G_CDS: 0.08 Total: -11.87 kcal Atomic # 14 Polarization: 23.07 SS G_CDS: -5.03 Total: 18.04 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -36.79 -10.81 -47.60 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071653950.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.580 kcal (2) G-P(sol) polarization free energy of solvation -36.789 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.791 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.807 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.596 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.984 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds