Wall clock time and date at job start Tue Mar 31 2020 22:14:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09003 * 109.58498 * 2 1 4 4 C 1.53194 * 109.59307 * 120.28765 * 2 1 3 5 5 C 1.53039 * 109.31328 * 174.42340 * 4 2 1 6 6 C 1.53040 * 109.53994 * 298.63236 * 5 4 2 7 7 H 1.08998 * 109.49724 * 301.38795 * 6 5 4 8 8 N 1.46493 * 109.49891 * 181.31843 * 6 5 4 9 9 C 1.34778 * 120.00063 * 155.06578 * 8 6 5 10 10 O 1.21605 * 119.99933 * 359.97438 * 9 8 6 11 11 C 1.47432 * 120.00088 * 180.02562 * 9 8 6 12 12 C 1.38740 * 120.33221 * 359.97438 * 11 9 8 13 13 C 1.38870 * 120.73112 * 180.29674 * 12 11 9 14 14 C 1.36359 * 121.05213 * 359.41764 * 13 12 11 15 15 C 1.40434 * 120.08023 * 0.59735 * 14 13 12 16 16 C 1.40805 * 121.25423 * 179.70180 * 15 14 13 17 17 C 1.36640 * 118.15611 * 179.97438 * 16 15 14 18 18 C 1.39231 * 119.90202 * 0.02562 * 17 16 15 19 19 N 1.31231 * 121.70194 * 359.97438 * 18 17 16 20 20 C 1.33347 * 121.35066 * 0.03708 * 19 18 17 21 21 C 1.53189 * 109.33853 * 61.34988 * 6 5 4 22 22 N 1.46929 * 109.58552 * 239.57662 * 2 1 3 23 23 C 1.36939 * 120.63083 * 6.60103 * 22 2 1 24 24 H 1.08000 * 119.99711 * 330.15714 * 23 22 2 25 25 C 1.38814 * 119.99816 * 150.15478 * 23 22 2 26 26 N 1.31618 * 120.00222 * 344.50819 * 25 23 22 27 27 Si 1.86799 * 119.99667 * 164.50391 * 25 23 22 28 28 H 1.48506 * 109.46955 * 60.00181 * 27 25 23 29 29 H 1.48497 * 109.47329 * 180.02562 * 27 25 23 30 30 H 1.48493 * 109.47324 * 300.00231 * 27 25 23 31 31 H 1.08998 * 109.47024 * 299.71093 * 1 2 3 32 32 H 1.08992 * 109.47748 * 59.71473 * 1 2 3 33 33 H 1.08999 * 109.46885 * 179.71629 * 1 2 3 34 34 H 1.08997 * 109.49400 * 54.46967 * 4 2 1 35 35 H 1.08997 * 109.49202 * 294.37150 * 4 2 1 36 36 H 1.08998 * 109.45863 * 178.61183 * 5 4 2 37 37 H 1.08998 * 109.44923 * 58.65188 * 5 4 2 38 38 H 0.96998 * 120.00271 * 335.06740 * 8 6 5 39 39 H 1.07998 * 119.63691 * 0.02562 * 12 11 9 40 40 H 1.07995 * 119.47429 * 179.72168 * 13 12 11 41 41 H 1.08001 * 119.95787 * 180.28219 * 14 13 12 42 42 H 1.07996 * 120.92667 * 359.96078 * 16 15 14 43 43 H 1.07993 * 120.04998 * 179.97438 * 17 16 15 44 44 H 1.08010 * 119.14744 * 179.97438 * 18 17 16 45 45 H 1.09002 * 109.58512 * 65.16620 * 21 6 5 46 46 H 1.08995 * 109.58891 * 185.59620 * 21 6 5 47 47 H 0.96998 * 119.99758 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8953 1.0270 0.0000 4 6 2.0437 -0.7279 1.2462 5 6 3.5676 -0.8465 1.1710 6 6 3.9570 -1.6657 -0.0616 7 1 3.4989 -2.6529 -0.0020 8 7 5.4143 -1.8053 -0.1156 9 6 5.9678 -2.8481 -0.7656 10 8 5.2574 -3.6735 -1.3070 11 6 7.4344 -2.9889 -0.8194 12 6 8.2513 -2.0517 -0.2038 13 6 9.6337 -2.1729 -0.2545 14 6 10.2249 -3.2193 -0.8986 15 6 9.4354 -4.1904 -1.5356 16 6 10.0199 -5.2777 -2.2131 17 6 9.1918 -6.1858 -2.8102 18 6 7.8114 -6.0190 -2.7377 19 7 7.2717 -5.0039 -2.1050 20 6 8.0241 -4.0830 -1.5018 21 6 3.4650 -0.9492 -1.3231 22 7 2.0225 -0.7010 -1.1937 23 6 1.1536 -1.1157 -2.1674 24 1 0.1397 -1.3827 -1.9083 25 6 1.5760 -1.1929 -3.4875 26 7 2.6866 -0.5925 -3.8593 27 14 0.5681 -2.1492 -4.7362 28 1 -0.7925 -1.5613 -4.8286 29 1 1.2293 -2.0793 -6.0640 30 1 0.4664 -3.5675 -4.3085 31 1 -0.3633 0.5093 0.8926 32 1 -0.3634 0.5182 -0.8873 33 1 -0.3633 -1.0277 -0.0051 34 1 1.6031 -1.7237 1.2933 35 1 1.7662 -0.1642 2.1369 36 1 3.9380 -1.3422 2.0683 37 1 4.0060 0.1489 1.0989 38 1 5.9809 -1.1472 0.3165 39 1 7.8073 -1.2162 0.3170 40 1 10.2504 -1.4291 0.2280 41 1 11.3017 -3.2986 -0.9232 42 1 11.0929 -5.3906 -2.2596 43 1 9.6073 -7.0311 -3.3384 44 1 7.1682 -6.7440 -3.2145 45 1 3.9901 -0.0003 -1.4327 46 1 3.6516 -1.5755 -2.1954 47 1 2.9816 -0.6461 -4.7818 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001071653950.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:14:26 Heat of formation + Delta-G solvation = 24.308987 kcal Electronic energy + Delta-G solvation = -29475.461113 eV Core-core repulsion = 25622.747458 eV Total energy + Delta-G solvation = -3852.713655 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -41.96596 -40.62738 -39.14735 -37.89228 -35.96531 -34.67177 -34.41608 -32.51242 -31.79127 -31.47421 -30.78955 -27.76949 -26.83478 -25.54847 -24.46004 -24.34623 -23.84926 -22.16724 -21.42505 -20.85632 -19.21535 -18.79185 -18.33606 -17.84683 -17.23875 -17.01363 -16.56874 -16.05503 -15.75588 -15.67030 -15.46951 -15.15977 -15.08242 -14.89949 -14.85115 -14.45715 -14.13299 -14.04916 -13.85571 -13.49234 -13.09302 -13.02177 -12.79627 -12.73630 -12.68777 -12.57856 -12.32052 -12.28307 -12.14425 -11.99586 -11.67004 -11.48923 -11.41459 -11.15342 -10.96456 -10.55010 -10.11078 -10.03592 -9.80290 -9.27232 -8.63070 -7.87218 -5.33649 -0.81153 -0.16512 0.77976 1.36263 1.43626 1.46900 1.81382 2.14967 2.30529 2.48696 3.17771 3.29463 3.35932 3.53851 3.71098 3.76595 3.87364 3.93578 4.02184 4.04922 4.08664 4.18826 4.26092 4.38791 4.44053 4.51104 4.60333 4.69433 4.71106 4.80698 4.88799 4.92348 4.99168 5.00315 5.05538 5.09694 5.17872 5.21985 5.29983 5.33598 5.36557 5.49416 5.54479 5.58417 5.60475 5.68645 5.79846 5.85837 6.39579 6.67488 7.10624 7.14038 7.42138 7.88880 8.38136 9.17657 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.012388 B = 0.003537 C = 0.002955 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2259.619051 B = 7913.634721 C = 9473.409090 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.153 3.847 3 H 0.024 0.976 4 C -0.118 4.118 5 C -0.106 4.106 6 C 0.134 3.866 7 H 0.044 0.956 8 N -0.708 5.708 9 C 0.539 3.461 10 O -0.556 6.556 11 C -0.152 4.152 12 C -0.046 4.046 13 C -0.127 4.127 14 C -0.055 4.055 15 C -0.131 4.131 16 C -0.048 4.048 17 C -0.176 4.176 18 C 0.112 3.888 19 N -0.506 5.506 20 C 0.127 3.873 21 C 0.184 3.816 22 N -0.603 5.603 23 C -0.253 4.253 24 H 0.075 0.925 25 C -0.053 4.053 26 N -0.934 5.934 27 Si 0.955 3.045 28 H -0.263 1.263 29 H -0.297 1.297 30 H -0.288 1.288 31 H 0.080 0.920 32 H 0.037 0.963 33 H 0.044 0.956 34 H 0.049 0.951 35 H 0.099 0.901 36 H 0.085 0.915 37 H 0.077 0.923 38 H 0.409 0.591 39 H 0.158 0.842 40 H 0.179 0.821 41 H 0.181 0.819 42 H 0.188 0.812 43 H 0.176 0.824 44 H 0.163 0.837 45 H -0.002 1.002 46 H 0.035 0.965 47 H 0.243 0.757 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.700 -3.666 12.149 24.280 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.048 3.952 3 H 0.042 0.958 4 C -0.157 4.157 5 C -0.144 4.144 6 C 0.028 3.972 7 H 0.062 0.938 8 N -0.361 5.361 9 C 0.327 3.673 10 O -0.433 6.433 11 C -0.156 4.156 12 C -0.066 4.066 13 C -0.145 4.145 14 C -0.073 4.073 15 C -0.133 4.133 16 C -0.073 4.073 17 C -0.196 4.196 18 C -0.059 4.059 19 N -0.214 5.214 20 C 0.005 3.995 21 C 0.057 3.943 22 N -0.328 5.328 23 C -0.383 4.383 24 H 0.092 0.908 25 C -0.248 4.248 26 N -0.580 5.580 27 Si 0.784 3.216 28 H -0.188 1.188 29 H -0.224 1.224 30 H -0.215 1.215 31 H 0.099 0.901 32 H 0.057 0.943 33 H 0.063 0.937 34 H 0.068 0.932 35 H 0.117 0.883 36 H 0.104 0.896 37 H 0.095 0.905 38 H 0.247 0.753 39 H 0.175 0.825 40 H 0.197 0.803 41 H 0.198 0.802 42 H 0.205 0.795 43 H 0.193 0.807 44 H 0.180 0.820 45 H 0.016 0.984 46 H 0.053 0.947 47 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges 19.267 -4.041 11.711 22.906 hybrid contribution 0.028 -0.474 -1.433 1.509 sum 19.295 -4.516 10.278 22.323 Atomic orbital electron populations 1.21730 0.94720 1.01076 1.01118 1.20819 0.94335 0.93415 0.86608 0.95822 1.21960 0.94532 1.00803 0.98440 1.21645 0.97160 0.99972 0.95601 1.21474 0.79126 0.98822 0.97800 0.93766 1.45798 1.07570 1.26896 1.55879 1.18628 0.88598 0.81523 0.78554 1.90839 1.63971 1.43330 1.45184 1.19992 0.92226 0.98418 1.05003 1.21844 0.94923 0.95939 0.93911 1.21326 0.93385 0.99670 1.00090 1.21716 1.01689 0.91325 0.92615 1.19223 0.92420 0.99411 1.02241 1.22017 1.02488 0.90680 0.92137 1.22281 0.93418 1.02220 1.01655 1.23588 0.95205 0.93898 0.93242 1.68260 1.41069 1.03331 1.08776 1.19038 0.90847 0.93652 0.95999 1.20704 0.83837 0.95026 0.94779 1.44318 1.02451 1.65589 1.20399 1.19446 0.95563 1.36670 0.86640 0.90782 1.25815 0.99091 1.00845 0.99066 1.70160 1.25924 1.45672 1.16233 0.85510 0.78940 0.78908 0.78238 1.18795 1.22360 1.21505 0.90075 0.94335 0.93716 0.93204 0.88277 0.89634 0.90487 0.75332 0.82490 0.80331 0.80206 0.79463 0.80666 0.81958 0.98402 0.94676 0.94807 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.83 7.95 71.98 0.57 -4.26 16 2 C 0.15 6.36 3.50 44.97 0.16 6.52 16 3 H 0.02 1.00 8.14 -2.39 -0.02 0.98 16 4 C -0.12 -3.86 5.37 30.67 0.16 -3.70 16 5 C -0.11 -3.32 5.35 30.62 0.16 -3.16 16 6 C 0.13 5.70 2.60 45.07 0.12 5.82 16 7 H 0.04 2.22 7.58 -2.39 -0.02 2.20 16 8 N -0.71 -25.91 5.03 -445.44 -2.24 -28.15 16 9 C 0.54 23.18 7.73 86.67 0.67 23.85 16 10 O -0.56 -30.53 14.85 -4.05 -0.06 -30.59 16 11 C -0.15 -5.17 5.91 -19.86 -0.12 -5.28 16 12 C -0.05 -0.99 9.52 22.54 0.21 -0.77 16 13 C -0.13 -1.77 9.93 21.98 0.22 -1.56 16 14 C -0.06 -0.78 9.75 22.37 0.22 -0.56 16 15 C -0.13 -2.97 5.74 -21.29 -0.12 -3.09 16 16 C -0.05 -0.77 9.90 22.52 0.22 -0.55 16 17 C -0.18 -3.27 10.03 22.13 0.22 -3.04 16 18 C 0.11 3.24 11.15 85.02 0.95 4.18 16 19 N -0.51 -20.01 8.44 -187.95 -1.59 -21.60 16 20 C 0.13 4.37 6.61 40.61 0.27 4.64 16 21 C 0.18 9.86 4.86 86.36 0.42 10.28 16 22 N -0.60 -32.25 2.99 -675.19 -2.02 -34.26 16 23 C -0.25 -14.90 8.58 84.03 0.72 -14.18 16 24 H 0.07 4.19 6.23 -2.91 -0.02 4.17 16 25 C -0.05 -3.27 4.94 84.86 0.42 -2.85 16 26 N -0.93 -61.04 11.23 21.65 0.24 -60.80 16 27 Si 0.96 50.02 29.58 68.60 2.03 52.05 16 28 H -0.26 -12.75 7.11 99.48 0.71 -12.04 16 29 H -0.30 -15.69 7.11 99.48 0.71 -14.98 16 30 H -0.29 -15.19 7.11 99.48 0.71 -14.48 16 31 H 0.08 2.32 8.14 -2.39 -0.02 2.30 16 32 H 0.04 1.59 7.67 -2.39 -0.02 1.57 16 33 H 0.04 1.73 7.40 -2.39 -0.02 1.71 16 34 H 0.05 1.76 8.14 -2.39 -0.02 1.74 16 35 H 0.10 2.44 8.14 -2.39 -0.02 2.42 16 36 H 0.09 2.17 8.14 -2.39 -0.02 2.16 16 37 H 0.08 2.18 8.14 -2.39 -0.02 2.16 16 38 H 0.41 10.90 6.63 -92.71 -0.61 10.29 16 39 H 0.16 2.41 6.37 -2.91 -0.02 2.40 16 40 H 0.18 0.91 8.06 -2.91 -0.02 0.88 16 41 H 0.18 0.81 8.06 -2.91 -0.02 0.79 16 42 H 0.19 1.11 8.06 -2.91 -0.02 1.09 16 43 H 0.18 1.73 8.06 -2.91 -0.02 1.71 16 44 H 0.16 4.07 8.06 -2.91 -0.02 4.05 16 45 H 0.00 -0.11 8.14 -2.39 -0.02 -0.13 16 46 H 0.03 2.29 6.15 -2.39 -0.01 2.27 16 47 H 0.24 15.66 8.31 -92.71 -0.77 14.89 16 Total: -1.00 -95.15 376.45 2.22 -92.93 By element: Atomic # 1 Polarization: 17.76 SS G_CDS: 0.38 Total: 18.13 kcal Atomic # 6 Polarization: 6.81 SS G_CDS: 5.48 Total: 12.28 kcal Atomic # 7 Polarization: -139.21 SS G_CDS: -5.60 Total: -144.81 kcal Atomic # 8 Polarization: -30.53 SS G_CDS: -0.06 Total: -30.59 kcal Atomic # 14 Polarization: 50.02 SS G_CDS: 2.03 Total: 52.05 kcal Total: -95.15 2.22 -92.93 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071653950.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.235 kcal (2) G-P(sol) polarization free energy of solvation -95.150 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.085 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.224 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -92.926 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.309 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds