Wall clock time and date at job start Tue Mar 31 2020 22:14:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08998 * 109.58477 * 2 1 4 4 C 1.53193 * 109.58692 * 120.27973 * 2 1 3 5 5 C 1.53042 * 109.31590 * 174.56843 * 4 2 1 6 6 C 1.53041 * 109.53770 * 298.63696 * 5 4 2 7 7 H 1.09000 * 109.49443 * 301.41315 * 6 5 4 8 8 N 1.46495 * 109.50171 * 181.31469 * 6 5 4 9 9 C 1.34777 * 120.00184 * 154.99944 * 8 6 5 10 10 O 1.21545 * 119.99848 * 359.97438 * 9 8 6 11 11 C 1.47900 * 119.99841 * 180.02562 * 9 8 6 12 12 C 1.38888 * 121.11819 * 6.06854 * 11 9 8 13 13 C 1.39264 * 119.58548 * 179.97438 * 12 11 9 14 14 N 1.30991 * 121.88292 * 359.97438 * 13 12 11 15 15 C 1.33536 * 121.82731 * 0.02562 * 14 13 12 16 16 C 1.40716 * 120.96841 * 180.02562 * 15 14 13 17 17 C 1.36070 * 119.73691 * 179.29216 * 16 15 14 18 18 C 1.39354 * 121.05367 * 0.67056 * 17 16 15 19 19 C 1.36247 * 120.83726 * 359.53917 * 18 17 16 20 20 C 1.40105 * 119.64691 * 0.02562 * 19 18 17 21 21 C 1.53196 * 109.31536 * 61.35954 * 6 5 4 22 22 N 1.46926 * 109.70743 * 239.64384 * 2 1 3 23 23 C 1.36933 * 120.62816 * 6.50636 * 22 2 1 24 24 H 1.08001 * 120.00489 * 329.75108 * 23 22 2 25 25 C 1.38819 * 119.99855 * 149.74967 * 23 22 2 26 26 N 1.31618 * 119.99617 * 345.37893 * 25 23 22 27 27 Si 1.86799 * 119.99986 * 165.37608 * 25 23 22 28 28 H 1.48492 * 109.47374 * 59.99658 * 27 25 23 29 29 H 1.48497 * 109.47053 * 180.02562 * 27 25 23 30 30 H 1.48503 * 109.46695 * 299.99692 * 27 25 23 31 31 H 1.09002 * 109.47383 * 299.99975 * 1 2 3 32 32 H 1.08999 * 109.47140 * 60.00619 * 1 2 3 33 33 H 1.09004 * 109.46751 * 180.02562 * 1 2 3 34 34 H 1.09006 * 109.49942 * 294.51951 * 4 2 1 35 35 H 1.08996 * 109.50102 * 54.61430 * 4 2 1 36 36 H 1.09008 * 109.46197 * 58.65341 * 5 4 2 37 37 H 1.08993 * 109.46075 * 178.61590 * 5 4 2 38 38 H 0.96996 * 120.00034 * 334.99930 * 8 6 5 39 39 H 1.08004 * 120.20328 * 359.97438 * 12 11 9 40 40 H 1.08000 * 119.06106 * 179.97438 * 13 12 11 41 41 H 1.07994 * 120.13150 * 359.97263 * 16 15 14 42 42 H 1.08001 * 119.46689 * 180.20998 * 17 16 15 43 43 H 1.07999 * 119.57652 * 179.56934 * 18 17 16 44 44 H 1.08001 * 120.17417 * 180.02562 * 19 18 17 45 45 H 1.08997 * 109.58243 * 65.15440 * 21 6 5 46 46 H 1.08995 * 109.58680 * 185.43908 * 21 6 5 47 47 H 0.96998 * 119.99507 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8953 1.0269 0.0000 4 6 2.0435 -0.7277 1.2464 5 6 3.5678 -0.8432 1.1731 6 6 3.9605 -1.6607 -0.0597 7 1 3.5038 -2.6487 -0.0016 8 7 5.4181 -1.7974 -0.1119 9 6 5.9744 -2.8394 -0.7610 10 8 5.2667 -3.6659 -1.3025 11 6 7.4460 -2.9776 -0.8132 12 6 8.2733 -2.1204 -0.0991 13 6 9.6549 -2.2797 -0.1710 14 7 10.2060 -3.2209 -0.8965 15 6 9.4735 -4.0808 -1.6089 16 6 10.0845 -5.0855 -2.3818 17 6 9.3136 -5.9574 -3.0866 18 6 7.9232 -5.8648 -3.0682 19 6 7.2971 -4.9023 -2.3348 20 6 8.0594 -3.9931 -1.5896 21 6 3.4686 -0.9436 -1.3209 22 7 2.0254 -0.6990 -1.1936 23 6 1.1585 -1.1152 -2.1684 24 1 0.1469 -1.3911 -1.9097 25 6 1.5800 -1.1826 -3.4894 26 7 2.6947 -0.5863 -3.8556 27 14 0.5651 -2.1195 -4.7470 28 1 -0.7913 -1.5213 -4.8332 29 1 1.2265 -2.0412 -6.0742 30 1 0.4537 -3.5413 -4.3330 31 1 -0.3634 0.5138 0.8900 32 1 -0.3633 0.5137 -0.8900 33 1 -0.3633 -1.0277 0.0005 34 1 1.7637 -0.1653 2.1373 35 1 1.6050 -1.7245 1.2923 36 1 4.0046 0.1530 1.1023 37 1 3.9380 -1.3389 2.0704 38 1 5.9828 -1.1380 0.3206 39 1 7.8477 -1.3351 0.5081 40 1 10.2902 -1.6082 0.3873 41 1 11.1608 -5.1711 -2.4066 42 1 9.7870 -6.7289 -3.6757 43 1 7.3347 -6.5652 -3.6421 44 1 6.2189 -4.8406 -2.3278 45 1 3.9920 0.0064 -1.4287 46 1 3.6600 -1.5673 -2.1940 47 1 2.9890 -0.6330 -4.7787 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001071663843.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:14:31 Heat of formation + Delta-G solvation = 46.131719 kcal Electronic energy + Delta-G solvation = -29492.031128 eV Core-core repulsion = 25640.263778 eV Total energy + Delta-G solvation = -3851.767350 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -41.11699 -39.35416 -37.65712 -37.15494 -34.59807 -33.49271 -32.85056 -31.03301 -30.58226 -29.98090 -29.65809 -26.29992 -25.29640 -24.56415 -23.63084 -22.75425 -22.28621 -20.82852 -20.35651 -19.33487 -18.18178 -17.56381 -17.35474 -16.44210 -15.68341 -15.58685 -15.15609 -14.88346 -14.75264 -14.43914 -14.07019 -13.95622 -13.82881 -13.78683 -13.41230 -13.22674 -13.18451 -12.76158 -12.43687 -11.91799 -11.86182 -11.65566 -11.50525 -11.42412 -11.15810 -10.93028 -10.71793 -10.63211 -10.49285 -10.44170 -10.30634 -10.20294 -9.98786 -9.70499 -9.51330 -9.15997 -8.89347 -8.70503 -8.44284 -8.29031 -6.62820 -5.76446 -3.22069 0.04994 0.70056 1.70913 2.75586 3.18150 3.31271 3.41383 3.47239 3.48717 4.08572 4.12816 4.48328 4.51458 4.57719 4.65881 4.77963 5.00305 5.13631 5.25229 5.28687 5.32790 5.41943 5.44843 5.52271 5.55855 5.61946 5.69929 5.91639 5.93813 6.03630 6.06170 6.23221 6.24636 6.24988 6.35383 6.39351 6.42946 6.47274 6.53353 6.58916 6.68090 6.77755 6.89766 7.01667 7.09837 7.25828 7.68498 7.71477 7.73804 7.84617 8.41042 8.48828 9.22231 9.86078 10.41751 11.31776 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.012338 B = 0.003549 C = 0.002933 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2268.815235 B = 7886.661919 C = 9545.562910 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.165 3.835 3 H 0.025 0.975 4 C -0.126 4.126 5 C -0.117 4.117 6 C 0.115 3.885 7 H 0.085 0.915 8 N -0.707 5.707 9 C 0.554 3.446 10 O -0.517 6.517 11 C -0.058 4.058 12 C -0.146 4.146 13 C 0.125 3.875 14 N -0.464 5.464 15 C 0.124 3.876 16 C -0.104 4.104 17 C -0.096 4.096 18 C -0.123 4.123 19 C -0.094 4.094 20 C -0.067 4.067 21 C 0.169 3.831 22 N -0.582 5.582 23 C -0.255 4.255 24 H 0.070 0.930 25 C 0.008 3.992 26 N -0.900 5.900 27 Si 0.900 3.100 28 H -0.283 1.283 29 H -0.291 1.291 30 H -0.282 1.282 31 H 0.038 0.962 32 H 0.061 0.939 33 H 0.053 0.947 34 H 0.055 0.945 35 H 0.061 0.939 36 H 0.059 0.941 37 H 0.051 0.949 38 H 0.393 0.607 39 H 0.142 0.858 40 H 0.164 0.836 41 H 0.134 0.866 42 H 0.128 0.872 43 H 0.129 0.871 44 H 0.172 0.828 45 H 0.018 0.982 46 H 0.094 0.906 47 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.479 -3.909 9.282 16.036 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.058 3.942 3 H 0.043 0.957 4 C -0.166 4.166 5 C -0.155 4.155 6 C 0.010 3.990 7 H 0.103 0.897 8 N -0.357 5.357 9 C 0.340 3.660 10 O -0.393 6.393 11 C -0.070 4.070 12 C -0.167 4.167 13 C -0.047 4.047 14 N -0.173 5.173 15 C 0.002 3.998 16 C -0.123 4.123 17 C -0.116 4.116 18 C -0.141 4.141 19 C -0.112 4.112 20 C -0.069 4.069 21 C 0.042 3.958 22 N -0.306 5.306 23 C -0.385 4.385 24 H 0.087 0.913 25 C -0.191 4.191 26 N -0.544 5.544 27 Si 0.730 3.270 28 H -0.209 1.209 29 H -0.217 1.217 30 H -0.209 1.209 31 H 0.057 0.943 32 H 0.080 0.920 33 H 0.072 0.928 34 H 0.074 0.926 35 H 0.080 0.920 36 H 0.078 0.922 37 H 0.070 0.930 38 H 0.227 0.773 39 H 0.159 0.841 40 H 0.181 0.819 41 H 0.152 0.848 42 H 0.146 0.854 43 H 0.147 0.853 44 H 0.189 0.811 45 H 0.036 0.964 46 H 0.112 0.888 47 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 12.887 -4.640 8.613 16.180 hybrid contribution -0.895 0.099 -0.451 1.007 sum 11.992 -4.542 8.162 15.200 Atomic orbital electron populations 1.21795 0.95941 1.01417 1.00228 1.20492 0.93115 0.93561 0.87008 0.95735 1.22050 0.94131 1.01401 0.99003 1.21686 0.97579 0.99642 0.96565 1.22116 0.76973 1.01247 0.98660 0.89671 1.46016 1.09034 1.25978 1.54673 1.17978 0.86425 0.82195 0.79394 1.90633 1.62672 1.41651 1.44386 1.20542 0.94144 0.95463 0.96832 1.22405 0.95073 0.99424 0.99757 1.22857 0.92323 0.94624 0.94872 1.67779 1.40044 1.03398 1.06029 1.18874 0.88957 0.95402 0.96550 1.20736 1.00327 0.94159 0.97063 1.20995 0.94055 0.98403 0.98117 1.21122 0.94466 0.99057 0.99415 1.22179 1.03623 0.92283 0.93117 1.18703 0.93728 0.96326 0.98184 1.21062 0.83720 0.96919 0.94099 1.43989 1.02492 1.64704 1.19370 1.19085 0.95325 1.38170 0.85900 0.91287 1.25099 0.97727 0.99155 0.97090 1.69980 1.23784 1.43776 1.16872 0.86404 0.79532 0.80320 0.80724 1.20878 1.21666 1.20877 0.94325 0.91973 0.92796 0.92586 0.92020 0.92184 0.92987 0.77274 0.84052 0.81871 0.84772 0.85364 0.85336 0.81100 0.96435 0.88824 0.93633 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.50 7.96 37.16 0.30 -2.20 16 2 C 0.16 3.28 3.49 -67.60 -0.24 3.04 16 3 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 4 C -0.13 -2.06 5.37 -26.61 -0.14 -2.20 16 5 C -0.12 -1.78 5.35 -26.69 -0.14 -1.92 16 6 C 0.11 2.13 2.60 -67.81 -0.18 1.95 16 7 H 0.09 1.80 7.58 -51.93 -0.39 1.40 16 8 N -0.71 -10.98 5.04 -54.62 -0.28 -11.26 16 9 C 0.55 9.57 7.72 -12.30 -0.09 9.48 16 10 O -0.52 -10.79 13.19 5.33 0.07 -10.72 16 11 C -0.06 -0.86 5.94 -104.34 -0.62 -1.48 16 12 C -0.15 -1.62 9.59 -38.96 -0.37 -1.99 16 13 C 0.13 1.33 11.14 -17.53 -0.20 1.14 16 14 N -0.46 -6.13 10.30 -11.01 -0.11 -6.25 16 15 C 0.12 1.76 6.61 -84.87 -0.56 1.20 16 16 C -0.10 -1.25 9.99 -39.43 -0.39 -1.65 16 17 C -0.10 -1.05 9.94 -39.95 -0.40 -1.44 16 18 C -0.12 -1.55 9.96 -39.88 -0.40 -1.94 16 19 C -0.09 -1.46 9.25 -39.60 -0.37 -1.83 16 20 C -0.07 -1.03 5.76 -106.52 -0.61 -1.65 16 21 C 0.17 3.97 4.85 -3.71 -0.02 3.95 16 22 N -0.58 -14.16 2.98 -164.78 -0.49 -14.65 16 23 C -0.26 -6.87 8.57 -15.06 -0.13 -7.00 16 24 H 0.07 1.81 6.26 -52.49 -0.33 1.48 16 25 C 0.01 0.24 4.96 -17.43 -0.09 0.15 16 26 N -0.90 -26.36 11.21 55.49 0.62 -25.74 16 27 Si 0.90 22.11 29.58 -169.99 -5.03 17.09 16 28 H -0.28 -6.77 7.11 56.52 0.40 -6.36 16 29 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 30 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 31 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.06 1.24 7.66 -51.93 -0.40 0.84 16 33 H 0.05 1.01 7.42 -51.93 -0.39 0.62 16 34 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 35 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 36 H 0.06 0.86 8.14 -51.92 -0.42 0.44 16 37 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 38 H 0.39 4.66 6.78 -40.82 -0.28 4.38 16 39 H 0.14 1.09 6.56 -52.48 -0.34 0.75 16 40 H 0.16 1.10 8.06 -52.49 -0.42 0.68 16 41 H 0.13 1.33 8.06 -52.49 -0.42 0.91 16 42 H 0.13 0.99 8.06 -52.49 -0.42 0.57 16 43 H 0.13 1.35 8.06 -52.49 -0.42 0.92 16 44 H 0.17 3.03 4.98 -52.49 -0.26 2.77 16 45 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 46 H 0.09 2.61 6.16 -51.93 -0.32 2.29 16 47 H 0.25 7.29 8.31 -40.82 -0.34 6.95 16 LS Contribution 373.59 15.07 5.63 5.63 Total: -1.00 -32.81 373.59 -10.73 -43.54 By element: Atomic # 1 Polarization: 13.25 SS G_CDS: -6.49 Total: 6.75 kcal Atomic # 6 Polarization: 0.25 SS G_CDS: -4.65 Total: -4.40 kcal Atomic # 7 Polarization: -57.63 SS G_CDS: -0.26 Total: -57.89 kcal Atomic # 8 Polarization: -10.79 SS G_CDS: 0.07 Total: -10.72 kcal Atomic # 14 Polarization: 22.11 SS G_CDS: -5.03 Total: 17.09 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -32.81 -10.73 -43.54 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071663843.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.669 kcal (2) G-P(sol) polarization free energy of solvation -32.810 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.859 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.727 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.537 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.132 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds