Wall clock time and date at job start Tue Mar 31 2020 22:14:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08998 * 109.58477 * 2 1 4 4 C 1.53193 * 109.58692 * 120.27973 * 2 1 3 5 5 C 1.53042 * 109.31590 * 174.56843 * 4 2 1 6 6 C 1.53041 * 109.53770 * 298.63696 * 5 4 2 7 7 H 1.09000 * 109.49443 * 301.41315 * 6 5 4 8 8 N 1.46495 * 109.50171 * 181.31469 * 6 5 4 9 9 C 1.34777 * 120.00184 * 154.99944 * 8 6 5 10 10 O 1.21545 * 119.99848 * 359.97438 * 9 8 6 11 11 C 1.47900 * 119.99841 * 180.02562 * 9 8 6 12 12 C 1.38888 * 121.11819 * 6.06854 * 11 9 8 13 13 C 1.39264 * 119.58548 * 179.97438 * 12 11 9 14 14 N 1.30991 * 121.88292 * 359.97438 * 13 12 11 15 15 C 1.33536 * 121.82731 * 0.02562 * 14 13 12 16 16 C 1.40716 * 120.96841 * 180.02562 * 15 14 13 17 17 C 1.36070 * 119.73691 * 179.29216 * 16 15 14 18 18 C 1.39354 * 121.05367 * 0.67056 * 17 16 15 19 19 C 1.36247 * 120.83726 * 359.53917 * 18 17 16 20 20 C 1.40105 * 119.64691 * 0.02562 * 19 18 17 21 21 C 1.53196 * 109.31536 * 61.35954 * 6 5 4 22 22 N 1.46926 * 109.70743 * 239.64384 * 2 1 3 23 23 C 1.36933 * 120.62816 * 6.50636 * 22 2 1 24 24 H 1.08001 * 120.00489 * 329.75108 * 23 22 2 25 25 C 1.38819 * 119.99855 * 149.74967 * 23 22 2 26 26 N 1.31618 * 119.99617 * 345.37893 * 25 23 22 27 27 Si 1.86799 * 119.99986 * 165.37608 * 25 23 22 28 28 H 1.48492 * 109.47374 * 59.99658 * 27 25 23 29 29 H 1.48497 * 109.47053 * 180.02562 * 27 25 23 30 30 H 1.48503 * 109.46695 * 299.99692 * 27 25 23 31 31 H 1.09002 * 109.47383 * 299.99975 * 1 2 3 32 32 H 1.08999 * 109.47140 * 60.00619 * 1 2 3 33 33 H 1.09004 * 109.46751 * 180.02562 * 1 2 3 34 34 H 1.09006 * 109.49942 * 294.51951 * 4 2 1 35 35 H 1.08996 * 109.50102 * 54.61430 * 4 2 1 36 36 H 1.09008 * 109.46197 * 58.65341 * 5 4 2 37 37 H 1.08993 * 109.46075 * 178.61590 * 5 4 2 38 38 H 0.96996 * 120.00034 * 334.99930 * 8 6 5 39 39 H 1.08004 * 120.20328 * 359.97438 * 12 11 9 40 40 H 1.08000 * 119.06106 * 179.97438 * 13 12 11 41 41 H 1.07994 * 120.13150 * 359.97263 * 16 15 14 42 42 H 1.08001 * 119.46689 * 180.20998 * 17 16 15 43 43 H 1.07999 * 119.57652 * 179.56934 * 18 17 16 44 44 H 1.08001 * 120.17417 * 180.02562 * 19 18 17 45 45 H 1.08997 * 109.58243 * 65.15440 * 21 6 5 46 46 H 1.08995 * 109.58680 * 185.43908 * 21 6 5 47 47 H 0.96998 * 119.99507 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8953 1.0269 0.0000 4 6 2.0435 -0.7277 1.2464 5 6 3.5678 -0.8432 1.1731 6 6 3.9605 -1.6607 -0.0597 7 1 3.5038 -2.6487 -0.0016 8 7 5.4181 -1.7974 -0.1119 9 6 5.9744 -2.8394 -0.7610 10 8 5.2667 -3.6659 -1.3025 11 6 7.4460 -2.9776 -0.8132 12 6 8.2733 -2.1204 -0.0991 13 6 9.6549 -2.2797 -0.1710 14 7 10.2060 -3.2209 -0.8965 15 6 9.4735 -4.0808 -1.6089 16 6 10.0845 -5.0855 -2.3818 17 6 9.3136 -5.9574 -3.0866 18 6 7.9232 -5.8648 -3.0682 19 6 7.2971 -4.9023 -2.3348 20 6 8.0594 -3.9931 -1.5896 21 6 3.4686 -0.9436 -1.3209 22 7 2.0254 -0.6990 -1.1936 23 6 1.1585 -1.1152 -2.1684 24 1 0.1469 -1.3911 -1.9097 25 6 1.5800 -1.1826 -3.4894 26 7 2.6947 -0.5863 -3.8556 27 14 0.5651 -2.1195 -4.7470 28 1 -0.7913 -1.5213 -4.8332 29 1 1.2265 -2.0412 -6.0742 30 1 0.4537 -3.5413 -4.3330 31 1 -0.3634 0.5138 0.8900 32 1 -0.3633 0.5137 -0.8900 33 1 -0.3633 -1.0277 0.0005 34 1 1.7637 -0.1653 2.1373 35 1 1.6050 -1.7245 1.2923 36 1 4.0046 0.1530 1.1023 37 1 3.9380 -1.3389 2.0704 38 1 5.9828 -1.1380 0.3206 39 1 7.8477 -1.3351 0.5081 40 1 10.2902 -1.6082 0.3873 41 1 11.1608 -5.1711 -2.4066 42 1 9.7870 -6.7289 -3.6757 43 1 7.3347 -6.5652 -3.6421 44 1 6.2189 -4.8406 -2.3278 45 1 3.9920 0.0064 -1.4287 46 1 3.6600 -1.5673 -2.1940 47 1 2.9890 -0.6330 -4.7787 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001071663843.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:14:30 Heat of formation + Delta-G solvation = 25.006366 kcal Electronic energy + Delta-G solvation = -29492.947192 eV Core-core repulsion = 25640.263778 eV Total energy + Delta-G solvation = -3852.683414 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -42.17376 -40.69357 -39.21703 -38.10923 -36.13469 -34.74434 -34.49909 -32.39090 -31.77152 -31.54800 -30.81264 -27.86154 -27.00352 -25.80740 -24.58209 -24.11274 -23.72925 -22.22361 -21.77864 -20.93225 -19.20801 -18.64596 -18.46632 -18.25519 -17.28735 -16.87976 -16.49568 -16.22447 -15.90277 -15.70254 -15.59966 -15.30862 -15.19354 -14.96395 -14.85629 -14.57372 -14.28434 -14.19808 -14.03490 -13.48881 -13.08210 -12.81876 -12.78700 -12.72901 -12.63977 -12.58085 -12.36006 -12.30433 -12.15936 -12.00886 -11.67265 -11.56659 -11.46606 -11.28060 -11.14916 -10.55386 -10.35236 -10.19750 -9.83017 -9.32003 -8.62244 -7.87174 -5.34045 -0.96952 -0.24358 0.65071 1.39275 1.44367 1.48485 1.71937 1.93710 2.11616 2.48770 3.07437 3.26054 3.29458 3.42004 3.61030 3.66568 3.72508 3.83920 3.94660 4.08768 4.14280 4.20687 4.23884 4.37635 4.38608 4.52121 4.55140 4.62318 4.70774 4.75567 4.79395 4.88326 5.00654 5.02231 5.06656 5.07892 5.19025 5.27939 5.30934 5.32101 5.39354 5.49215 5.54565 5.55291 5.60477 5.69256 5.77740 5.85866 6.38547 6.47930 6.78001 7.12399 7.17590 7.88737 8.37945 9.17732 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.012338 B = 0.003549 C = 0.002933 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2268.815235 B = 7886.661919 C = 9545.562910 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.153 3.847 3 H 0.023 0.977 4 C -0.118 4.118 5 C -0.107 4.107 6 C 0.131 3.869 7 H 0.054 0.946 8 N -0.694 5.694 9 C 0.550 3.450 10 O -0.565 6.565 11 C -0.093 4.093 12 C -0.119 4.119 13 C 0.129 3.871 14 N -0.473 5.473 15 C 0.103 3.897 16 C -0.103 4.103 17 C -0.093 4.093 18 C -0.117 4.117 19 C -0.135 4.135 20 C -0.088 4.088 21 C 0.181 3.819 22 N -0.602 5.602 23 C -0.252 4.252 24 H 0.074 0.926 25 C -0.050 4.050 26 N -0.933 5.933 27 Si 0.955 3.045 28 H -0.267 1.267 29 H -0.298 1.298 30 H -0.285 1.285 31 H 0.079 0.921 32 H 0.037 0.963 33 H 0.045 0.955 34 H 0.097 0.903 35 H 0.051 0.949 36 H 0.077 0.923 37 H 0.088 0.912 38 H 0.414 0.586 39 H 0.180 0.820 40 H 0.212 0.788 41 H 0.159 0.841 42 H 0.167 0.833 43 H 0.144 0.856 44 H 0.138 0.862 45 H -0.001 1.001 46 H 0.040 0.960 47 H 0.244 0.756 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.274 -3.210 12.103 18.988 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.048 3.952 3 H 0.041 0.959 4 C -0.157 4.157 5 C -0.145 4.145 6 C 0.025 3.975 7 H 0.072 0.928 8 N -0.345 5.345 9 C 0.337 3.663 10 O -0.445 6.445 11 C -0.104 4.104 12 C -0.139 4.139 13 C -0.044 4.044 14 N -0.181 5.181 15 C -0.018 4.018 16 C -0.121 4.121 17 C -0.112 4.112 18 C -0.134 4.134 19 C -0.153 4.153 20 C -0.090 4.090 21 C 0.054 3.946 22 N -0.327 5.327 23 C -0.383 4.383 24 H 0.091 0.909 25 C -0.246 4.246 26 N -0.580 5.580 27 Si 0.783 3.217 28 H -0.193 1.193 29 H -0.224 1.224 30 H -0.212 1.212 31 H 0.098 0.902 32 H 0.056 0.944 33 H 0.064 0.936 34 H 0.116 0.884 35 H 0.070 0.930 36 H 0.095 0.905 37 H 0.107 0.893 38 H 0.252 0.748 39 H 0.197 0.803 40 H 0.229 0.771 41 H 0.176 0.824 42 H 0.185 0.815 43 H 0.162 0.838 44 H 0.155 0.845 45 H 0.017 0.983 46 H 0.058 0.942 47 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges 14.684 -3.920 11.483 19.049 hybrid contribution -1.408 -0.076 -1.269 1.897 sum 13.276 -3.996 10.214 17.221 Atomic orbital electron populations 1.21734 0.94837 1.01113 1.01042 1.20815 0.94240 0.93440 0.86714 0.95947 1.21956 0.94576 1.00892 0.98323 1.21664 0.97105 1.00096 0.95669 1.21614 0.78415 0.99474 0.98005 0.92756 1.45766 1.08077 1.26208 1.54470 1.18507 0.87711 0.81702 0.78340 1.90629 1.64176 1.43466 1.46219 1.20413 0.92651 0.97714 0.99660 1.22868 0.95134 0.98291 0.97650 1.23665 0.92574 0.94182 0.93939 1.67864 1.40100 1.03840 1.06311 1.19168 0.88358 0.96634 0.97663 1.21125 1.01624 0.93320 0.96070 1.21342 0.92927 0.98992 0.97973 1.21400 0.95861 0.98032 0.98147 1.21997 1.02333 0.94865 0.96103 1.18890 0.94698 0.96714 0.98722 1.20738 0.83853 0.95288 0.94769 1.44290 1.02432 1.65640 1.20310 1.19429 0.95782 1.36488 0.86552 0.90875 1.25795 0.99003 1.00755 0.99020 1.70144 1.25561 1.45914 1.16357 0.85526 0.78842 0.78970 0.78335 1.19265 1.22414 1.21163 0.90218 0.94429 0.93602 0.88439 0.92970 0.90479 0.89332 0.74779 0.80263 0.77141 0.82351 0.81513 0.83819 0.84476 0.98306 0.94151 0.94709 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.59 7.96 71.98 0.57 -4.02 16 2 C 0.15 5.94 3.49 44.97 0.16 6.09 16 3 H 0.02 0.90 8.14 -2.39 -0.02 0.88 16 4 C -0.12 -3.51 5.37 30.67 0.16 -3.34 16 5 C -0.11 -2.96 5.35 30.62 0.16 -2.80 16 6 C 0.13 4.92 2.60 45.07 0.12 5.03 16 7 H 0.05 2.40 7.58 -2.39 -0.02 2.38 16 8 N -0.69 -21.61 5.04 -444.99 -2.24 -23.85 16 9 C 0.55 20.06 7.72 86.80 0.67 20.73 16 10 O -0.56 -26.04 13.19 -3.86 -0.05 -26.09 16 11 C -0.09 -2.81 5.94 -19.68 -0.12 -2.93 16 12 C -0.12 -2.36 9.59 22.67 0.22 -2.14 16 13 C 0.13 2.31 11.14 85.06 0.95 3.26 16 14 N -0.47 -11.46 10.30 -188.74 -1.94 -13.40 16 15 C 0.10 2.85 6.61 40.34 0.27 3.12 16 16 C -0.10 -2.32 9.99 22.37 0.22 -2.10 16 17 C -0.09 -1.91 9.94 22.03 0.22 -1.69 16 18 C -0.12 -3.05 9.96 22.07 0.22 -2.83 16 19 C -0.13 -4.57 9.25 22.26 0.21 -4.37 16 20 C -0.09 -2.82 5.76 -21.09 -0.12 -2.94 16 21 C 0.18 8.91 4.85 86.36 0.42 9.33 16 22 N -0.60 -30.16 2.98 -675.23 -2.02 -32.18 16 23 C -0.25 -14.08 8.57 84.04 0.72 -13.36 16 24 H 0.07 3.94 6.26 -2.91 -0.02 3.92 16 25 C -0.05 -2.95 4.96 84.86 0.42 -2.53 16 26 N -0.93 -58.01 11.21 21.65 0.24 -57.77 16 27 Si 0.95 47.53 29.58 68.60 2.03 49.56 16 28 H -0.27 -12.51 7.11 99.48 0.71 -11.80 16 29 H -0.30 -15.02 7.11 99.48 0.71 -14.32 16 30 H -0.29 -14.14 7.11 99.48 0.71 -13.43 16 31 H 0.08 2.15 8.14 -2.39 -0.02 2.13 16 32 H 0.04 1.48 7.66 -2.39 -0.02 1.46 16 33 H 0.04 1.67 7.42 -2.39 -0.02 1.65 16 34 H 0.10 2.17 8.14 -2.38 -0.02 2.15 16 35 H 0.05 1.67 8.14 -2.39 -0.02 1.65 16 36 H 0.08 1.92 8.14 -2.38 -0.02 1.90 16 37 H 0.09 1.90 8.14 -2.39 -0.02 1.88 16 38 H 0.41 8.97 6.78 -92.71 -0.63 8.34 16 39 H 0.18 2.01 6.56 -2.91 -0.02 1.99 16 40 H 0.21 1.69 8.06 -2.91 -0.02 1.67 16 41 H 0.16 2.71 8.06 -2.91 -0.02 2.69 16 42 H 0.17 2.08 8.06 -2.91 -0.02 2.05 16 43 H 0.14 3.12 8.06 -2.91 -0.02 3.10 16 44 H 0.14 5.58 4.98 -2.91 -0.01 5.57 16 45 H 0.00 -0.05 8.14 -2.39 -0.02 -0.07 16 46 H 0.04 2.42 6.16 -2.39 -0.01 2.40 16 47 H 0.24 14.97 8.31 -92.71 -0.77 14.20 16 Total: -1.00 -80.68 373.59 1.86 -78.82 By element: Atomic # 1 Polarization: 22.02 SS G_CDS: 0.37 Total: 22.39 kcal Atomic # 6 Polarization: -2.95 SS G_CDS: 5.47 Total: 2.51 kcal Atomic # 7 Polarization: -121.24 SS G_CDS: -5.96 Total: -127.20 kcal Atomic # 8 Polarization: -26.04 SS G_CDS: -0.05 Total: -26.09 kcal Atomic # 14 Polarization: 47.53 SS G_CDS: 2.03 Total: 49.56 kcal Total: -80.68 1.86 -78.82 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071663843.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.829 kcal (2) G-P(sol) polarization free energy of solvation -80.682 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.147 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.859 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.823 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.006 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds