Wall clock time and date at job start Tue Mar 31 2020 22:14:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09001 * 109.70717 * 2 1 4 4 C 1.53197 * 109.58563 * 239.64728 * 2 1 3 5 5 C 1.53043 * 109.31357 * 185.57567 * 4 2 1 6 6 C 1.53356 * 109.60639 * 61.37362 * 5 4 2 7 7 H 1.08990 * 109.68565 * 178.74647 * 6 5 4 8 8 N 1.46496 * 109.47468 * 58.54735 * 6 5 4 9 9 C 1.34776 * 120.00259 * 155.37420 * 8 6 5 10 10 O 1.21547 * 119.99594 * 0.02562 * 9 8 6 11 11 C 1.47898 * 120.00476 * 180.02562 * 9 8 6 12 12 C 1.38895 * 121.11078 * 5.77186 * 11 9 8 13 13 C 1.39272 * 119.57737 * 180.02562 * 12 11 9 14 14 N 1.30987 * 121.88805 * 0.02562 * 13 12 11 15 15 C 1.33540 * 121.82635 * 0.02562 * 14 13 12 16 16 C 1.40714 * 120.97049 * 179.97438 * 15 14 13 17 17 C 1.36063 * 119.74043 * 180.02562 * 16 15 14 18 18 C 1.39355 * 121.05325 * 359.97438 * 17 16 15 19 19 C 1.36251 * 120.83851 * 0.02562 * 18 17 16 20 20 C 1.40101 * 119.64010 * 359.71656 * 19 18 17 21 21 C 1.53196 * 109.14689 * 298.71137 * 6 5 4 22 22 N 1.46924 * 109.59055 * 120.35905 * 2 1 3 23 23 C 1.36933 * 120.62654 * 353.36824 * 22 2 1 24 24 H 1.07999 * 120.00380 * 31.55945 * 23 22 2 25 25 C 1.38819 * 120.00366 * 211.54935 * 23 22 2 26 26 N 1.31622 * 119.99198 * 9.80180 * 25 23 22 27 27 Si 1.86798 * 120.00438 * 189.80139 * 25 23 22 28 28 H 1.48499 * 109.46958 * 59.99924 * 27 25 23 29 29 H 1.48494 * 109.46910 * 180.02562 * 27 25 23 30 30 H 1.48503 * 109.46709 * 300.00272 * 27 25 23 31 31 H 1.09001 * 109.46973 * 299.64077 * 1 2 3 32 32 H 1.09000 * 109.47633 * 59.64358 * 1 2 3 33 33 H 1.08996 * 109.47495 * 179.64299 * 1 2 3 34 34 H 1.08994 * 109.49601 * 305.52585 * 4 2 1 35 35 H 1.09000 * 109.49853 * 65.59236 * 4 2 1 36 36 H 1.08995 * 109.46035 * 181.38468 * 5 4 2 37 37 H 1.08995 * 109.46245 * 301.36086 * 5 4 2 38 38 H 0.97003 * 120.00413 * 335.37547 * 8 6 5 39 39 H 1.08002 * 120.20940 * 0.02562 * 12 11 9 40 40 H 1.08002 * 119.05543 * 180.02562 * 13 12 11 41 41 H 1.07998 * 120.13291 * 0.03604 * 16 15 14 42 42 H 1.08000 * 119.47385 * 179.97438 * 17 16 15 43 43 H 1.07996 * 119.57962 * 179.97438 * 18 17 16 44 44 H 1.07996 * 120.17458 * 180.02562 * 19 18 17 45 45 H 1.08997 * 109.58753 * 294.72099 * 21 6 5 46 46 H 1.09007 * 109.58389 * 174.43545 * 21 6 5 47 47 H 0.97006 * 119.99615 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8975 1.0262 0.0000 4 6 2.0435 -0.7293 -1.2455 5 6 3.5674 -0.8479 -1.1703 6 6 3.9595 -1.6674 0.0653 7 1 5.0436 -1.7715 0.1079 8 7 3.3429 -2.9940 -0.0127 9 6 3.8959 -4.0337 0.6427 10 8 4.9060 -3.8706 1.2988 11 6 3.2738 -5.3732 0.5635 12 6 2.1905 -5.6131 -0.2720 13 6 1.6291 -6.8867 -0.3211 14 7 2.0928 -7.8757 0.4018 15 6 3.1304 -7.7182 1.2276 16 6 3.6135 -8.7932 1.9964 17 6 4.6720 -8.6046 2.8302 18 6 5.2902 -7.3602 2.9371 19 6 4.8497 -6.2967 2.2082 20 6 3.7654 -6.4562 1.3355 21 6 3.4651 -0.9469 1.3236 22 7 2.0226 -0.6996 1.1944 23 6 1.1538 -1.1127 2.1689 24 1 0.1480 -1.4061 1.9067 25 6 1.5658 -1.1546 3.4939 26 7 2.7169 -0.6197 3.8422 27 14 0.4867 -1.9700 4.7823 28 1 0.2816 -3.3967 4.4251 29 1 1.1474 -1.8814 6.1092 30 1 -0.8269 -1.2795 4.8367 31 1 -0.3633 0.5083 0.8932 32 1 -0.3634 0.5193 -0.8867 33 1 -0.3634 -1.0276 -0.0064 34 1 1.6029 -1.7252 -1.2914 35 1 1.7654 -0.1671 -2.1369 36 1 3.9377 -1.3447 -2.0670 37 1 4.0061 0.1473 -1.0992 38 1 2.5366 -3.1241 -0.5361 39 1 1.7861 -4.8170 -0.8797 40 1 0.7872 -7.0639 -0.9740 41 1 3.1461 -9.7642 1.9249 42 1 5.0391 -9.4325 3.4186 43 1 6.1284 -7.2371 3.6068 44 1 5.3370 -5.3372 2.2991 45 1 3.9903 0.0020 1.4315 46 1 3.6521 -1.5697 2.1985 47 1 3.0047 -0.6486 4.7681 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001071663844.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:14:35 Heat of formation + Delta-G solvation = 47.776308 kcal Electronic energy + Delta-G solvation = -30347.412407 eV Core-core repulsion = 26495.716372 eV Total energy + Delta-G solvation = -3851.696035 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -40.98911 -39.34638 -37.61029 -37.03665 -34.27446 -33.36137 -32.79348 -31.01151 -30.46589 -29.96425 -29.56770 -26.36788 -25.22287 -24.68333 -23.51394 -22.71955 -22.19954 -20.82335 -20.48381 -18.88840 -18.16457 -17.52965 -17.20977 -16.36095 -15.59389 -15.37076 -15.08844 -14.81728 -14.63960 -14.35578 -14.11052 -13.84183 -13.82630 -13.73456 -13.33113 -13.14385 -12.98383 -12.84105 -12.51155 -11.95902 -11.75171 -11.57158 -11.36357 -11.24443 -11.20161 -10.96488 -10.93240 -10.73736 -10.44499 -10.41083 -10.34366 -10.08206 -9.98923 -9.57844 -9.52995 -9.05094 -8.77258 -8.54481 -8.47587 -8.16603 -6.59999 -5.77198 -3.25626 0.18625 0.82546 1.82964 2.87777 3.33040 3.36593 3.42910 3.43995 3.54046 4.20446 4.26182 4.47339 4.64641 4.73560 4.78936 4.89569 5.11912 5.23647 5.26584 5.31590 5.35085 5.37761 5.46314 5.54098 5.56824 5.68405 5.82493 5.95234 6.03956 6.05293 6.10562 6.15457 6.27438 6.30711 6.34827 6.38590 6.44967 6.54164 6.55331 6.58588 6.68734 6.82227 6.93752 7.01743 7.07696 7.33308 7.67764 7.79751 7.85249 7.92949 8.48230 8.58852 9.21686 9.84396 10.41027 11.30103 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.010779 B = 0.004507 C = 0.003960 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2597.030399 B = 6211.580139 C = 7068.967214 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.165 3.835 3 H 0.025 0.975 4 C -0.131 4.131 5 C -0.119 4.119 6 C 0.116 3.884 7 H 0.079 0.921 8 N -0.685 5.685 9 C 0.558 3.442 10 O -0.532 6.532 11 C -0.055 4.055 12 C -0.143 4.143 13 C 0.127 3.873 14 N -0.466 5.466 15 C 0.124 3.876 16 C -0.105 4.105 17 C -0.097 4.097 18 C -0.126 4.126 19 C -0.092 4.092 20 C -0.067 4.067 21 C 0.161 3.839 22 N -0.582 5.582 23 C -0.251 4.251 24 H 0.066 0.934 25 C 0.009 3.991 26 N -0.900 5.900 27 Si 0.896 3.104 28 H -0.285 1.285 29 H -0.290 1.290 30 H -0.283 1.283 31 H 0.061 0.939 32 H 0.037 0.963 33 H 0.051 0.949 34 H 0.053 0.947 35 H 0.054 0.946 36 H 0.051 0.949 37 H 0.072 0.928 38 H 0.396 0.604 39 H 0.141 0.859 40 H 0.164 0.836 41 H 0.133 0.867 42 H 0.127 0.873 43 H 0.127 0.873 44 H 0.172 0.828 45 H 0.027 0.973 46 H 0.100 0.900 47 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.601 -9.797 -10.070 14.141 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.058 3.942 3 H 0.043 0.957 4 C -0.170 4.170 5 C -0.157 4.157 6 C 0.011 3.989 7 H 0.097 0.903 8 N -0.335 5.335 9 C 0.344 3.656 10 O -0.411 6.411 11 C -0.066 4.066 12 C -0.164 4.164 13 C -0.045 4.045 14 N -0.175 5.175 15 C 0.002 3.998 16 C -0.123 4.123 17 C -0.117 4.117 18 C -0.144 4.144 19 C -0.110 4.110 20 C -0.070 4.070 21 C 0.034 3.966 22 N -0.306 5.306 23 C -0.381 4.381 24 H 0.084 0.916 25 C -0.190 4.190 26 N -0.544 5.544 27 Si 0.726 3.274 28 H -0.211 1.211 29 H -0.216 1.216 30 H -0.209 1.209 31 H 0.080 0.920 32 H 0.056 0.944 33 H 0.070 0.930 34 H 0.071 0.929 35 H 0.073 0.927 36 H 0.070 0.930 37 H 0.091 0.909 38 H 0.232 0.768 39 H 0.158 0.842 40 H 0.181 0.819 41 H 0.151 0.849 42 H 0.145 0.855 43 H 0.145 0.855 44 H 0.189 0.811 45 H 0.045 0.955 46 H 0.118 0.882 47 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 2.065 -10.475 -9.404 14.228 hybrid contribution -0.724 0.389 0.578 1.005 sum 1.341 -10.086 -8.825 13.469 Atomic orbital electron populations 1.21788 0.96087 1.01165 1.00247 1.20474 0.92905 0.93669 0.87144 0.95701 1.22074 0.95095 1.00592 0.99256 1.21750 0.97047 1.00235 0.96659 1.21968 0.97051 0.81273 0.98657 0.90301 1.45777 1.29251 1.08641 1.49852 1.17880 0.84196 0.83601 0.79957 1.90562 1.25437 1.84266 1.40787 1.20533 0.95750 0.94113 0.96197 1.22396 0.95769 0.99069 0.99202 1.22846 0.97971 0.88032 0.95659 1.67772 1.10626 1.33697 1.05368 1.18867 0.92707 0.92401 0.95808 1.20719 0.97203 0.97879 0.96516 1.20963 0.95435 0.97639 0.97689 1.21088 1.00564 0.92791 0.99951 1.22166 0.94335 1.01788 0.92692 1.18705 0.97533 0.92892 0.97877 1.21226 0.83813 0.97167 0.94367 1.44011 1.02658 1.64735 1.19179 1.19005 0.95568 1.37798 0.85707 0.91643 1.25134 0.97321 0.99366 0.97219 1.69922 1.21262 1.46252 1.16976 0.86472 0.80036 0.79505 0.81359 1.21138 1.21576 1.20889 0.92000 0.94425 0.93029 0.92868 0.92730 0.92981 0.90914 0.76848 0.84176 0.81934 0.84864 0.85483 0.85475 0.81124 0.95542 0.88196 0.93553 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.35 7.96 37.15 0.30 -2.06 16 2 C 0.16 3.10 3.50 -67.60 -0.24 2.87 16 3 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 4 C -0.13 -1.95 5.21 -26.61 -0.14 -2.09 16 5 C -0.12 -1.76 5.59 -26.52 -0.15 -1.90 16 6 C 0.12 2.09 2.83 -67.65 -0.19 1.90 16 7 H 0.08 1.45 7.58 -51.93 -0.39 1.06 16 8 N -0.69 -11.69 4.88 -54.46 -0.27 -11.96 16 9 C 0.56 10.36 7.72 -12.31 -0.09 10.26 16 10 O -0.53 -11.22 13.19 5.32 0.07 -11.15 16 11 C -0.05 -0.91 5.94 -104.34 -0.62 -1.53 16 12 C -0.14 -1.92 9.60 -38.95 -0.37 -2.30 16 13 C 0.13 1.60 11.14 -17.53 -0.20 1.40 16 14 N -0.47 -6.93 10.30 -11.01 -0.11 -7.05 16 15 C 0.12 1.94 6.61 -84.87 -0.56 1.38 16 16 C -0.10 -1.39 9.99 -39.43 -0.39 -1.78 16 17 C -0.10 -1.16 9.94 -39.95 -0.40 -1.56 16 18 C -0.13 -1.69 9.96 -39.88 -0.40 -2.09 16 19 C -0.09 -1.52 9.25 -39.60 -0.37 -1.89 16 20 C -0.07 -1.14 5.76 -106.52 -0.61 -1.76 16 21 C 0.16 3.69 4.84 -3.71 -0.02 3.67 16 22 N -0.58 -13.35 2.91 -164.77 -0.48 -13.83 16 23 C -0.25 -6.47 8.54 -15.06 -0.13 -6.59 16 24 H 0.07 1.65 6.27 -52.49 -0.33 1.32 16 25 C 0.01 0.24 5.07 -17.43 -0.09 0.15 16 26 N -0.90 -25.96 11.01 55.49 0.61 -25.35 16 27 Si 0.90 22.00 29.57 -169.99 -5.03 16.97 16 28 H -0.28 -7.06 7.11 56.52 0.40 -6.66 16 29 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 30 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 31 H 0.06 1.20 7.64 -51.93 -0.40 0.80 16 32 H 0.04 0.54 8.14 -51.93 -0.42 0.12 16 33 H 0.05 0.90 7.43 -51.93 -0.39 0.51 16 34 H 0.05 0.77 6.41 -51.93 -0.33 0.43 16 35 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 36 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 37 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 38 H 0.40 5.93 4.95 -40.82 -0.20 5.73 16 39 H 0.14 1.49 6.55 -52.49 -0.34 1.14 16 40 H 0.16 1.41 8.06 -52.49 -0.42 0.99 16 41 H 0.13 1.48 8.06 -52.49 -0.42 1.06 16 42 H 0.13 1.09 8.06 -52.49 -0.42 0.67 16 43 H 0.13 1.40 8.06 -52.49 -0.42 0.98 16 44 H 0.17 3.13 4.98 -52.49 -0.26 2.87 16 45 H 0.03 0.65 8.14 -51.93 -0.42 0.22 16 46 H 0.10 2.72 6.08 -51.93 -0.32 2.41 16 47 H 0.25 7.25 8.31 -40.82 -0.34 6.91 16 LS Contribution 369.90 15.07 5.57 5.57 Total: -1.00 -31.51 369.90 -10.62 -42.13 By element: Atomic # 1 Polarization: 14.88 SS G_CDS: -6.32 Total: 8.55 kcal Atomic # 6 Polarization: 0.76 SS G_CDS: -4.67 Total: -3.91 kcal Atomic # 7 Polarization: -57.94 SS G_CDS: -0.25 Total: -58.18 kcal Atomic # 8 Polarization: -11.22 SS G_CDS: 0.07 Total: -11.15 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -5.03 Total: 16.97 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -31.51 -10.62 -42.13 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071663844.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.907 kcal (2) G-P(sol) polarization free energy of solvation -31.511 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.396 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.619 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.130 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.776 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds