Wall clock time and date at job start Tue Mar 31 2020 22:14:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09001 * 109.70717 * 2 1 4 4 C 1.53197 * 109.58563 * 239.64728 * 2 1 3 5 5 C 1.53043 * 109.31357 * 185.57567 * 4 2 1 6 6 C 1.53356 * 109.60639 * 61.37362 * 5 4 2 7 7 H 1.08990 * 109.68565 * 178.74647 * 6 5 4 8 8 N 1.46496 * 109.47468 * 58.54735 * 6 5 4 9 9 C 1.34776 * 120.00259 * 155.37420 * 8 6 5 10 10 O 1.21547 * 119.99594 * 0.02562 * 9 8 6 11 11 C 1.47898 * 120.00476 * 180.02562 * 9 8 6 12 12 C 1.38895 * 121.11078 * 5.77186 * 11 9 8 13 13 C 1.39272 * 119.57737 * 180.02562 * 12 11 9 14 14 N 1.30987 * 121.88805 * 0.02562 * 13 12 11 15 15 C 1.33540 * 121.82635 * 0.02562 * 14 13 12 16 16 C 1.40714 * 120.97049 * 179.97438 * 15 14 13 17 17 C 1.36063 * 119.74043 * 180.02562 * 16 15 14 18 18 C 1.39355 * 121.05325 * 359.97438 * 17 16 15 19 19 C 1.36251 * 120.83851 * 0.02562 * 18 17 16 20 20 C 1.40101 * 119.64010 * 359.71656 * 19 18 17 21 21 C 1.53196 * 109.14689 * 298.71137 * 6 5 4 22 22 N 1.46924 * 109.59055 * 120.35905 * 2 1 3 23 23 C 1.36933 * 120.62654 * 353.36824 * 22 2 1 24 24 H 1.07999 * 120.00380 * 31.55945 * 23 22 2 25 25 C 1.38819 * 120.00366 * 211.54935 * 23 22 2 26 26 N 1.31622 * 119.99198 * 9.80180 * 25 23 22 27 27 Si 1.86798 * 120.00438 * 189.80139 * 25 23 22 28 28 H 1.48499 * 109.46958 * 59.99924 * 27 25 23 29 29 H 1.48494 * 109.46910 * 180.02562 * 27 25 23 30 30 H 1.48503 * 109.46709 * 300.00272 * 27 25 23 31 31 H 1.09001 * 109.46973 * 299.64077 * 1 2 3 32 32 H 1.09000 * 109.47633 * 59.64358 * 1 2 3 33 33 H 1.08996 * 109.47495 * 179.64299 * 1 2 3 34 34 H 1.08994 * 109.49601 * 305.52585 * 4 2 1 35 35 H 1.09000 * 109.49853 * 65.59236 * 4 2 1 36 36 H 1.08995 * 109.46035 * 181.38468 * 5 4 2 37 37 H 1.08995 * 109.46245 * 301.36086 * 5 4 2 38 38 H 0.97003 * 120.00413 * 335.37547 * 8 6 5 39 39 H 1.08002 * 120.20940 * 0.02562 * 12 11 9 40 40 H 1.08002 * 119.05543 * 180.02562 * 13 12 11 41 41 H 1.07998 * 120.13291 * 0.03604 * 16 15 14 42 42 H 1.08000 * 119.47385 * 179.97438 * 17 16 15 43 43 H 1.07996 * 119.57962 * 179.97438 * 18 17 16 44 44 H 1.07996 * 120.17458 * 180.02562 * 19 18 17 45 45 H 1.08997 * 109.58753 * 294.72099 * 21 6 5 46 46 H 1.09007 * 109.58389 * 174.43545 * 21 6 5 47 47 H 0.97006 * 119.99615 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8975 1.0262 0.0000 4 6 2.0435 -0.7293 -1.2455 5 6 3.5674 -0.8479 -1.1703 6 6 3.9595 -1.6674 0.0653 7 1 5.0436 -1.7715 0.1079 8 7 3.3429 -2.9940 -0.0127 9 6 3.8959 -4.0337 0.6427 10 8 4.9060 -3.8706 1.2988 11 6 3.2738 -5.3732 0.5635 12 6 2.1905 -5.6131 -0.2720 13 6 1.6291 -6.8867 -0.3211 14 7 2.0928 -7.8757 0.4018 15 6 3.1304 -7.7182 1.2276 16 6 3.6135 -8.7932 1.9964 17 6 4.6720 -8.6046 2.8302 18 6 5.2902 -7.3602 2.9371 19 6 4.8497 -6.2967 2.2082 20 6 3.7654 -6.4562 1.3355 21 6 3.4651 -0.9469 1.3236 22 7 2.0226 -0.6996 1.1944 23 6 1.1538 -1.1127 2.1689 24 1 0.1480 -1.4061 1.9067 25 6 1.5658 -1.1546 3.4939 26 7 2.7169 -0.6197 3.8422 27 14 0.4867 -1.9700 4.7823 28 1 0.2816 -3.3967 4.4251 29 1 1.1474 -1.8814 6.1092 30 1 -0.8269 -1.2795 4.8367 31 1 -0.3633 0.5083 0.8932 32 1 -0.3634 0.5193 -0.8867 33 1 -0.3634 -1.0276 -0.0064 34 1 1.6029 -1.7252 -1.2914 35 1 1.7654 -0.1671 -2.1369 36 1 3.9377 -1.3447 -2.0670 37 1 4.0061 0.1473 -1.0992 38 1 2.5366 -3.1241 -0.5361 39 1 1.7861 -4.8170 -0.8797 40 1 0.7872 -7.0639 -0.9740 41 1 3.1461 -9.7642 1.9249 42 1 5.0391 -9.4325 3.4186 43 1 6.1284 -7.2371 3.6068 44 1 5.3370 -5.3372 2.2991 45 1 3.9903 0.0020 1.4315 46 1 3.6521 -1.5697 2.1985 47 1 3.0047 -0.6486 4.7681 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001071663844.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:14:34 Heat of formation + Delta-G solvation = 28.461029 kcal Electronic energy + Delta-G solvation = -30348.249980 eV Core-core repulsion = 26495.716372 eV Total energy + Delta-G solvation = -3852.533609 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -42.14496 -40.73694 -39.12737 -38.08708 -35.87010 -34.63066 -34.43751 -32.36220 -31.73544 -31.53179 -30.75460 -27.91866 -26.91083 -25.95973 -24.57293 -23.98885 -23.76321 -22.18663 -21.94508 -20.45453 -19.30728 -18.68145 -18.41755 -18.09070 -17.18737 -16.74740 -16.45605 -16.20455 -15.90835 -15.69336 -15.59871 -15.26533 -15.20284 -14.85402 -14.76918 -14.42087 -14.33330 -14.19320 -13.92427 -13.59967 -13.01619 -12.85311 -12.80393 -12.65267 -12.61390 -12.56987 -12.42550 -12.32902 -12.15490 -12.08355 -11.57947 -11.53401 -11.35918 -11.20254 -11.06153 -10.55030 -10.31484 -10.05077 -9.81799 -9.29357 -8.53785 -7.82554 -5.31343 -0.94139 -0.23168 0.68023 1.37474 1.40332 1.44564 1.75452 2.02902 2.23254 2.47340 3.09107 3.28106 3.33834 3.51233 3.63277 3.64610 3.69251 3.86191 4.01381 4.10238 4.15037 4.19345 4.22322 4.39226 4.49736 4.53083 4.57596 4.66763 4.75209 4.78360 4.82051 4.96829 5.03213 5.03838 5.06262 5.13226 5.16613 5.28044 5.32570 5.33103 5.47424 5.51620 5.59179 5.63106 5.68257 5.73163 5.77783 5.87913 6.45445 6.54498 6.78365 7.19283 7.21809 7.92809 8.43390 9.21556 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.010779 B = 0.004507 C = 0.003960 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2597.030399 B = 6211.580139 C = 7068.967214 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.153 3.847 3 H 0.013 0.987 4 C -0.120 4.120 5 C -0.110 4.110 6 C 0.126 3.874 7 H 0.068 0.932 8 N -0.676 5.676 9 C 0.551 3.449 10 O -0.569 6.569 11 C -0.091 4.091 12 C -0.125 4.125 13 C 0.128 3.872 14 N -0.474 5.474 15 C 0.102 3.898 16 C -0.106 4.106 17 C -0.092 4.092 18 C -0.117 4.117 19 C -0.132 4.132 20 C -0.090 4.090 21 C 0.171 3.829 22 N -0.594 5.594 23 C -0.233 4.233 24 H 0.075 0.925 25 C -0.052 4.052 26 N -0.936 5.936 27 Si 0.946 3.054 28 H -0.288 1.288 29 H -0.303 1.303 30 H -0.269 1.269 31 H 0.032 0.968 32 H 0.075 0.925 33 H 0.053 0.947 34 H 0.065 0.935 35 H 0.092 0.908 36 H 0.087 0.913 37 H 0.074 0.926 38 H 0.408 0.592 39 H 0.171 0.829 40 H 0.210 0.790 41 H 0.158 0.842 42 H 0.168 0.832 43 H 0.148 0.852 44 H 0.142 0.858 45 H -0.003 1.003 46 H 0.050 0.950 47 H 0.242 0.758 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.594 -11.734 -13.089 17.589 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.048 3.952 3 H 0.031 0.969 4 C -0.159 4.159 5 C -0.148 4.148 6 C 0.020 3.980 7 H 0.087 0.913 8 N -0.327 5.327 9 C 0.338 3.662 10 O -0.451 6.451 11 C -0.102 4.102 12 C -0.145 4.145 13 C -0.044 4.044 14 N -0.183 5.183 15 C -0.019 4.019 16 C -0.124 4.124 17 C -0.112 4.112 18 C -0.135 4.135 19 C -0.150 4.150 20 C -0.093 4.093 21 C 0.044 3.956 22 N -0.318 5.318 23 C -0.364 4.364 24 H 0.093 0.907 25 C -0.247 4.247 26 N -0.583 5.583 27 Si 0.776 3.224 28 H -0.214 1.214 29 H -0.230 1.230 30 H -0.195 1.195 31 H 0.052 0.948 32 H 0.094 0.906 33 H 0.072 0.928 34 H 0.084 0.916 35 H 0.110 0.890 36 H 0.106 0.894 37 H 0.092 0.908 38 H 0.246 0.754 39 H 0.189 0.811 40 H 0.226 0.774 41 H 0.175 0.825 42 H 0.186 0.814 43 H 0.165 0.835 44 H 0.159 0.841 45 H 0.015 0.985 46 H 0.068 0.932 47 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges -0.171 -12.412 -12.472 17.596 hybrid contribution -0.056 0.993 1.469 1.774 sum -0.228 -11.419 -11.003 15.859 Atomic orbital electron populations 1.21722 0.94673 1.01436 1.00762 1.20789 0.94173 0.93215 0.87009 0.96907 1.21971 0.94574 1.01178 0.98128 1.21728 0.97414 0.99887 0.95784 1.21660 0.96447 0.81849 0.98024 0.91343 1.45632 1.29567 1.07783 1.49675 1.18355 0.83847 0.84765 0.79201 1.90557 1.27208 1.85070 1.42224 1.20501 0.97896 0.93032 0.98761 1.22793 0.93778 1.00417 0.97544 1.23606 0.98459 0.87052 0.95255 1.67856 1.10354 1.34512 1.05538 1.19201 0.93347 0.92482 0.96884 1.21114 0.97268 0.98220 0.95791 1.21353 0.94602 0.97841 0.97385 1.21413 1.00584 0.92718 0.98793 1.22025 0.95901 1.01789 0.95293 1.18924 0.98051 0.93885 0.98424 1.20874 0.84243 0.95358 0.95168 1.44219 1.02135 1.65434 1.20032 1.19340 0.95898 1.35167 0.86007 0.90710 1.25778 0.98480 1.01209 0.99256 1.70111 1.23095 1.48916 1.16202 0.85650 0.79157 0.78532 0.79031 1.21434 1.22971 1.19471 0.94835 0.90577 0.92822 0.91649 0.88957 0.89427 0.90777 0.75388 0.81130 0.77374 0.82460 0.81410 0.83472 0.84082 0.98501 0.93175 0.94883 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.12 7.96 71.98 0.57 -3.54 16 2 C 0.15 5.50 3.50 44.97 0.16 5.66 16 3 H 0.01 0.51 8.14 -2.39 -0.02 0.49 16 4 C -0.12 -3.08 5.21 30.67 0.16 -2.92 16 5 C -0.11 -2.96 5.59 30.73 0.17 -2.79 16 6 C 0.13 4.60 2.83 45.18 0.13 4.73 16 7 H 0.07 2.64 7.58 -2.39 -0.02 2.62 16 8 N -0.68 -22.86 4.88 -444.50 -2.17 -25.03 16 9 C 0.55 21.31 7.72 86.80 0.67 21.98 16 10 O -0.57 -26.11 13.19 -3.86 -0.05 -26.16 16 11 C -0.09 -3.06 5.94 -19.68 -0.12 -3.18 16 12 C -0.12 -3.07 9.60 22.68 0.22 -2.85 16 13 C 0.13 2.83 11.14 85.07 0.95 3.78 16 14 N -0.47 -13.06 10.30 -188.74 -1.94 -15.00 16 15 C 0.10 3.11 6.61 40.34 0.27 3.38 16 16 C -0.11 -2.60 9.99 22.37 0.22 -2.38 16 17 C -0.09 -2.03 9.94 22.03 0.22 -1.81 16 18 C -0.12 -3.17 9.96 22.08 0.22 -2.95 16 19 C -0.13 -4.65 9.25 22.26 0.21 -4.44 16 20 C -0.09 -3.15 5.76 -21.09 -0.12 -3.27 16 21 C 0.17 8.22 4.84 86.36 0.42 8.64 16 22 N -0.59 -27.54 2.91 -675.22 -1.96 -29.50 16 23 C -0.23 -12.17 8.54 84.04 0.72 -11.45 16 24 H 0.08 3.72 6.27 -2.91 -0.02 3.70 16 25 C -0.05 -2.97 5.07 84.86 0.43 -2.54 16 26 N -0.94 -57.40 11.01 21.65 0.24 -57.16 16 27 Si 0.95 46.67 29.57 68.60 2.03 48.70 16 28 H -0.29 -14.12 7.11 99.48 0.71 -13.41 16 29 H -0.30 -15.44 7.11 99.48 0.71 -14.73 16 30 H -0.27 -12.52 7.11 99.48 0.71 -11.81 16 31 H 0.03 1.24 7.64 -2.39 -0.02 1.22 16 32 H 0.08 1.86 8.14 -2.39 -0.02 1.84 16 33 H 0.05 1.69 7.43 -2.39 -0.02 1.67 16 34 H 0.06 1.56 6.41 -2.39 -0.02 1.55 16 35 H 0.09 1.81 8.14 -2.39 -0.02 1.79 16 36 H 0.09 1.84 8.14 -2.39 -0.02 1.82 16 37 H 0.07 2.01 8.14 -2.39 -0.02 1.99 16 38 H 0.41 11.28 4.95 -92.71 -0.46 10.82 16 39 H 0.17 2.96 6.55 -2.91 -0.02 2.94 16 40 H 0.21 2.54 8.06 -2.91 -0.02 2.52 16 41 H 0.16 3.03 8.06 -2.91 -0.02 3.00 16 42 H 0.17 2.27 8.06 -2.91 -0.02 2.24 16 43 H 0.15 3.21 8.06 -2.91 -0.02 3.19 16 44 H 0.14 5.79 4.98 -2.91 -0.01 5.77 16 45 H 0.00 -0.16 8.14 -2.39 -0.02 -0.18 16 46 H 0.05 2.94 6.08 -2.38 -0.01 2.92 16 47 H 0.24 14.81 8.31 -92.70 -0.77 14.04 16 Total: -1.00 -76.29 369.90 2.17 -74.11 By element: Atomic # 1 Polarization: 25.45 SS G_CDS: 0.54 Total: 26.00 kcal Atomic # 6 Polarization: -1.46 SS G_CDS: 5.49 Total: 4.03 kcal Atomic # 7 Polarization: -120.85 SS G_CDS: -5.84 Total: -126.69 kcal Atomic # 8 Polarization: -26.11 SS G_CDS: -0.05 Total: -26.16 kcal Atomic # 14 Polarization: 46.67 SS G_CDS: 2.03 Total: 48.70 kcal Total: -76.29 2.17 -74.11 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071663844.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.575 kcal (2) G-P(sol) polarization free energy of solvation -76.288 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.287 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.174 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.113 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.461 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds