Wall clock time and date at job start Tue Mar 31 2020 22:14:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08992 * 109.58975 * 2 1 4 4 C 1.53191 * 109.58227 * 120.42332 * 2 1 3 5 5 C 1.53049 * 109.31147 * 174.42148 * 4 2 1 6 6 C 1.53044 * 109.53694 * 298.63282 * 5 4 2 7 7 H 1.08998 * 109.49644 * 181.31668 * 6 5 4 8 8 N 1.46499 * 109.49764 * 301.38234 * 6 5 4 9 9 C 1.34773 * 119.99737 * 205.00059 * 8 6 5 10 10 O 1.21542 * 120.00279 * 0.02562 * 9 8 6 11 11 C 1.47909 * 120.00003 * 180.02562 * 9 8 6 12 12 C 1.38898 * 121.10883 * 354.07453 * 11 9 8 13 13 C 1.39268 * 119.57518 * 180.02562 * 12 11 9 14 14 N 1.30999 * 121.88895 * 359.97438 * 13 12 11 15 15 C 1.33540 * 121.82467 * 0.03036 * 14 13 12 16 16 C 1.40710 * 120.97186 * 179.97438 * 15 14 13 17 17 C 1.36058 * 119.74008 * 180.02562 * 16 15 14 18 18 C 1.39347 * 121.05790 * 359.97438 * 17 16 15 19 19 C 1.36250 * 120.83664 * 0.02562 * 18 17 16 20 20 C 1.40104 * 119.64545 * 359.72746 * 19 18 17 21 21 C 1.52756 * 109.38258 * 61.24070 * 6 5 4 22 22 N 1.46929 * 109.58786 * 239.71149 * 2 1 3 23 23 C 1.36930 * 120.62894 * 6.58211 * 22 2 1 24 24 H 1.08002 * 120.00226 * 330.44690 * 23 22 2 25 25 C 1.38811 * 120.00006 * 150.44996 * 23 22 2 26 26 N 1.31619 * 120.00058 * 335.93288 * 25 23 22 27 27 Si 1.86800 * 120.00219 * 155.92666 * 25 23 22 28 28 H 1.48500 * 109.47092 * 0.02562 * 27 25 23 29 29 H 1.48499 * 109.47357 * 240.00191 * 27 25 23 30 30 H 1.48500 * 109.47182 * 120.00206 * 27 25 23 31 31 H 1.09001 * 109.47050 * 180.28389 * 1 2 3 32 32 H 1.08998 * 109.47008 * 300.29350 * 1 2 3 33 33 H 1.09006 * 109.46499 * 60.28634 * 1 2 3 34 34 H 1.08998 * 109.50224 * 294.37129 * 4 2 1 35 35 H 1.09001 * 109.49998 * 54.43670 * 4 2 1 36 36 H 1.08998 * 109.45847 * 58.65505 * 5 4 2 37 37 H 1.09003 * 109.45600 * 178.61316 * 5 4 2 38 38 H 0.96999 * 120.00121 * 24.99899 * 8 6 5 39 39 H 1.07997 * 120.20997 * 359.97438 * 12 11 9 40 40 H 1.08001 * 119.05709 * 180.02562 * 13 12 11 41 41 H 1.08002 * 120.12982 * 359.97438 * 16 15 14 42 42 H 1.08002 * 119.47332 * 179.97438 * 17 16 15 43 43 H 1.08002 * 119.58527 * 180.02562 * 18 17 16 44 44 H 1.08003 * 120.17762 * 180.02562 * 19 18 17 45 45 H 1.08998 * 109.51499 * 185.70580 * 21 6 5 46 46 H 1.09003 * 109.43190 * 65.42107 * 21 6 5 47 47 H 0.97000 * 119.99605 * 354.64023 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8955 1.0268 0.0000 4 6 2.0435 -0.7309 1.2446 5 6 3.5675 -0.8494 1.1692 6 6 3.9569 -1.6658 -0.0654 7 1 5.0412 -1.7697 -0.1056 8 7 3.3411 -2.9928 0.0117 9 6 3.8979 -4.0329 -0.6398 10 8 4.9112 -3.8701 -1.2910 11 6 3.2758 -5.3726 -0.5625 12 6 2.1903 -5.6129 0.2701 13 6 1.6298 -6.8868 0.3184 14 7 2.0963 -7.8760 -0.4027 15 6 3.1368 -7.7185 -1.2248 16 6 3.6236 -8.7937 -1.9909 17 6 4.6857 -8.6052 -2.8202 18 6 5.3032 -7.3605 -2.9260 19 6 4.8592 -6.2967 -2.1997 20 6 3.7645 -6.4532 -1.3394 21 6 3.4645 -0.9505 -1.3221 22 7 2.0226 -0.6982 -1.1953 23 6 1.1537 -1.1109 -2.1698 24 1 0.1386 -1.3743 -1.9119 25 6 1.5777 -1.1909 -3.4892 26 7 2.5930 -0.4608 -3.8996 27 14 0.7074 -2.3349 -4.6822 28 1 -0.3940 -3.0395 -3.9782 29 1 1.6753 -3.3302 -5.2090 30 1 0.1486 -1.5440 -5.8080 31 1 -0.3633 -1.0277 0.0051 32 1 -0.3633 0.5184 0.8873 33 1 -0.3632 0.5094 -0.8926 34 1 1.7660 -0.1694 2.1367 35 1 1.6024 -1.7266 1.2896 36 1 4.0061 0.1459 1.0996 37 1 3.9377 -1.3474 2.0654 38 1 2.5326 -3.1229 0.5317 39 1 1.7842 -4.8170 0.8768 40 1 0.7857 -7.0642 0.9684 41 1 3.1566 -9.7649 -1.9203 42 1 5.0561 -9.4336 -3.4059 43 1 6.1444 -7.2375 -3.5921 44 1 5.3456 -5.3366 -2.2902 45 1 3.6504 -1.5773 -2.1942 46 1 3.9930 -0.0034 -1.4309 47 1 2.9952 0.1895 -3.3028 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001071663845.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:14:39 Heat of formation + Delta-G solvation = 45.538051 kcal Electronic energy + Delta-G solvation = -30420.058991 eV Core-core repulsion = 26568.265897 eV Total energy + Delta-G solvation = -3851.793093 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -41.02907 -39.48176 -37.77447 -37.05789 -34.43386 -33.40869 -33.02847 -31.11839 -30.49151 -29.84861 -29.59479 -26.42907 -25.20477 -24.67509 -23.53755 -22.75779 -22.15810 -20.94925 -20.62154 -18.94910 -18.22085 -17.57897 -17.24545 -16.90452 -15.57153 -15.54712 -15.07561 -14.86212 -14.64755 -14.38476 -14.14490 -14.01089 -13.86070 -13.54858 -13.45495 -13.32285 -13.15571 -13.05611 -12.54643 -11.90622 -11.76821 -11.59198 -11.48590 -11.32039 -11.31263 -11.27575 -10.87896 -10.67197 -10.45275 -10.38748 -10.16005 -10.10650 -9.99138 -9.82840 -9.27953 -9.10411 -8.79149 -8.67587 -8.35726 -8.19285 -6.85545 -6.03861 -3.23976 0.15573 0.80522 1.80336 2.85132 3.25287 3.45843 3.49488 3.54411 3.64056 4.17914 4.23888 4.56461 4.61203 4.68374 4.75833 4.87367 5.08377 5.10916 5.17825 5.24558 5.26741 5.32342 5.34313 5.52483 5.54434 5.64704 5.79516 5.81350 5.93327 5.98814 6.03378 6.11359 6.15986 6.21714 6.28057 6.31279 6.33213 6.42542 6.44601 6.54445 6.59650 6.63864 6.87396 6.94203 6.98528 7.07219 7.16325 7.80139 7.83690 8.03871 8.49380 8.58486 9.11133 9.84932 10.29066 11.23352 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.011072 B = 0.004552 C = 0.004021 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2528.267637 B = 6150.017789 C = 6961.576369 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.167 3.833 3 H 0.023 0.977 4 C -0.131 4.131 5 C -0.119 4.119 6 C 0.124 3.876 7 H 0.081 0.919 8 N -0.687 5.687 9 C 0.559 3.441 10 O -0.531 6.531 11 C -0.056 4.056 12 C -0.142 4.142 13 C 0.127 3.873 14 N -0.464 5.464 15 C 0.124 3.876 16 C -0.104 4.104 17 C -0.097 4.097 18 C -0.124 4.124 19 C -0.093 4.093 20 C -0.066 4.066 21 C 0.141 3.859 22 N -0.589 5.589 23 C -0.347 4.347 24 H 0.059 0.941 25 C -0.018 4.018 26 N -0.913 5.913 27 Si 1.058 2.942 28 H -0.293 1.293 29 H -0.290 1.290 30 H -0.293 1.293 31 H 0.052 0.948 32 H 0.037 0.963 33 H 0.061 0.939 34 H 0.056 0.944 35 H 0.054 0.946 36 H 0.073 0.927 37 H 0.055 0.945 38 H 0.397 0.603 39 H 0.140 0.860 40 H 0.164 0.836 41 H 0.134 0.866 42 H 0.128 0.872 43 H 0.128 0.872 44 H 0.171 0.829 45 H 0.087 0.913 46 H 0.025 0.975 47 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.608 -10.288 10.698 14.929 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.060 3.940 3 H 0.041 0.959 4 C -0.170 4.170 5 C -0.157 4.157 6 C 0.018 3.982 7 H 0.099 0.901 8 N -0.337 5.337 9 C 0.345 3.655 10 O -0.410 6.410 11 C -0.068 4.068 12 C -0.163 4.163 13 C -0.045 4.045 14 N -0.173 5.173 15 C 0.002 3.998 16 C -0.122 4.122 17 C -0.117 4.117 18 C -0.142 4.142 19 C -0.111 4.111 20 C -0.069 4.069 21 C 0.014 3.986 22 N -0.314 5.314 23 C -0.476 4.476 24 H 0.077 0.923 25 C -0.221 4.221 26 N -0.553 5.553 27 Si 0.889 3.111 28 H -0.219 1.219 29 H -0.217 1.217 30 H -0.220 1.220 31 H 0.071 0.929 32 H 0.056 0.944 33 H 0.080 0.920 34 H 0.074 0.926 35 H 0.073 0.927 36 H 0.091 0.909 37 H 0.074 0.926 38 H 0.233 0.767 39 H 0.158 0.842 40 H 0.181 0.819 41 H 0.152 0.848 42 H 0.146 0.854 43 H 0.146 0.854 44 H 0.188 0.812 45 H 0.105 0.895 46 H 0.043 0.957 47 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 1.995 -11.586 8.649 14.595 hybrid contribution -0.268 1.418 1.742 2.262 sum 1.728 -10.168 10.391 14.640 Atomic orbital electron populations 1.21766 0.95821 1.01286 1.00157 1.20455 0.93204 0.93369 0.86942 0.95896 1.22069 0.94980 1.00726 0.99246 1.21701 0.97156 1.00206 0.96656 1.21620 0.97153 0.81442 0.97972 0.90106 1.45761 1.29150 1.08433 1.50366 1.17917 0.84175 0.83671 0.79759 1.90567 1.25224 1.84330 1.40886 1.20486 0.95906 0.94037 0.96346 1.22391 0.95642 0.99076 0.99191 1.22847 0.98034 0.87997 0.95664 1.67780 1.10435 1.33725 1.05356 1.18870 0.92764 0.92317 0.95842 1.20722 0.97135 0.97898 0.96481 1.20967 0.95401 0.97641 0.97678 1.21093 1.00586 0.92788 0.99752 1.22152 0.94252 1.01799 0.92896 1.18697 0.97508 0.92864 0.97839 1.21265 0.84998 0.96797 0.95558 1.44120 1.02191 1.65197 1.19848 1.19878 0.95970 1.43712 0.88001 0.92301 1.25712 1.00000 1.00652 0.95769 1.70718 1.25868 1.20799 1.37920 0.83622 0.75347 0.76346 0.75806 1.21889 1.21673 1.22044 0.92925 0.94443 0.92026 0.92572 0.92713 0.90880 0.92625 0.76674 0.84227 0.81897 0.84808 0.85424 0.85420 0.81193 0.89454 0.95716 0.91974 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.35 7.95 37.16 0.30 -2.06 16 2 C 0.17 3.13 3.50 -67.60 -0.24 2.90 16 3 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 4 C -0.13 -1.94 5.20 -26.61 -0.14 -2.08 16 5 C -0.12 -1.72 5.59 -26.68 -0.15 -1.87 16 6 C 0.12 2.19 2.81 -68.03 -0.19 2.00 16 7 H 0.08 1.45 7.58 -51.93 -0.39 1.06 16 8 N -0.69 -11.62 4.87 -54.83 -0.27 -11.88 16 9 C 0.56 10.30 7.72 -12.30 -0.09 10.21 16 10 O -0.53 -11.13 13.19 5.33 0.07 -11.06 16 11 C -0.06 -0.94 5.94 -104.34 -0.62 -1.56 16 12 C -0.14 -1.89 9.60 -38.95 -0.37 -2.26 16 13 C 0.13 1.58 11.14 -17.52 -0.20 1.38 16 14 N -0.46 -6.83 10.30 -11.00 -0.11 -6.94 16 15 C 0.12 1.92 6.61 -84.87 -0.56 1.36 16 16 C -0.10 -1.36 9.98 -39.43 -0.39 -1.75 16 17 C -0.10 -1.15 9.94 -39.95 -0.40 -1.54 16 18 C -0.12 -1.66 9.96 -39.88 -0.40 -2.06 16 19 C -0.09 -1.54 9.25 -39.60 -0.37 -1.90 16 20 C -0.07 -1.12 5.76 -106.52 -0.61 -1.74 16 21 C 0.14 3.15 4.26 -3.93 -0.02 3.13 16 22 N -0.59 -13.41 2.75 -165.04 -0.45 -13.87 16 23 C -0.35 -9.03 8.48 -15.06 -0.13 -9.16 16 24 H 0.06 1.54 6.29 -52.49 -0.33 1.21 16 25 C -0.02 -0.51 4.69 -17.43 -0.08 -0.60 16 26 N -0.91 -27.21 12.49 55.49 0.69 -26.51 16 27 Si 1.06 25.95 29.98 -169.99 -5.10 20.85 16 28 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 29 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 30 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 31 H 0.05 0.94 7.44 -51.93 -0.39 0.56 16 32 H 0.04 0.54 8.14 -51.93 -0.42 0.12 16 33 H 0.06 1.22 7.62 -51.93 -0.40 0.83 16 34 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 35 H 0.05 0.79 6.41 -51.93 -0.33 0.46 16 36 H 0.07 1.04 8.14 -51.93 -0.42 0.61 16 37 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 38 H 0.40 5.93 4.95 -40.82 -0.20 5.73 16 39 H 0.14 1.48 6.55 -52.49 -0.34 1.13 16 40 H 0.16 1.39 8.06 -52.49 -0.42 0.97 16 41 H 0.13 1.46 8.06 -52.49 -0.42 1.04 16 42 H 0.13 1.08 8.06 -52.49 -0.42 0.66 16 43 H 0.13 1.40 8.06 -52.49 -0.42 0.98 16 44 H 0.17 3.11 4.98 -52.48 -0.26 2.85 16 45 H 0.09 2.34 6.43 -51.93 -0.33 2.01 16 46 H 0.03 0.57 7.85 -51.93 -0.41 0.17 16 47 H 0.27 8.03 6.70 -40.82 -0.27 7.76 16 LS Contribution 369.00 15.07 5.56 5.56 Total: -1.00 -32.20 369.00 -10.53 -42.72 By element: Atomic # 1 Polarization: 14.98 SS G_CDS: -6.26 Total: 8.72 kcal Atomic # 6 Polarization: -2.93 SS G_CDS: -4.66 Total: -7.59 kcal Atomic # 7 Polarization: -59.07 SS G_CDS: -0.14 Total: -59.21 kcal Atomic # 8 Polarization: -11.13 SS G_CDS: 0.07 Total: -11.06 kcal Atomic # 14 Polarization: 25.95 SS G_CDS: -5.10 Total: 20.85 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -32.20 -10.53 -42.72 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071663845.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.261 kcal (2) G-P(sol) polarization free energy of solvation -32.196 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.065 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.527 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.723 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.538 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds