Wall clock time and date at job start Tue Mar 31 2020 22:14:39
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53004 * 1
3 3 H 1.08992 * 109.58975 * 2 1
4 4 C 1.53191 * 109.58227 * 120.42332 * 2 1 3
5 5 C 1.53049 * 109.31147 * 174.42148 * 4 2 1
6 6 C 1.53044 * 109.53694 * 298.63282 * 5 4 2
7 7 H 1.08998 * 109.49644 * 181.31668 * 6 5 4
8 8 N 1.46499 * 109.49764 * 301.38234 * 6 5 4
9 9 C 1.34773 * 119.99737 * 205.00059 * 8 6 5
10 10 O 1.21542 * 120.00279 * 0.02562 * 9 8 6
11 11 C 1.47909 * 120.00003 * 180.02562 * 9 8 6
12 12 C 1.38898 * 121.10883 * 354.07453 * 11 9 8
13 13 C 1.39268 * 119.57518 * 180.02562 * 12 11 9
14 14 N 1.30999 * 121.88895 * 359.97438 * 13 12 11
15 15 C 1.33540 * 121.82467 * 0.03036 * 14 13 12
16 16 C 1.40710 * 120.97186 * 179.97438 * 15 14 13
17 17 C 1.36058 * 119.74008 * 180.02562 * 16 15 14
18 18 C 1.39347 * 121.05790 * 359.97438 * 17 16 15
19 19 C 1.36250 * 120.83664 * 0.02562 * 18 17 16
20 20 C 1.40104 * 119.64545 * 359.72746 * 19 18 17
21 21 C 1.52756 * 109.38258 * 61.24070 * 6 5 4
22 22 N 1.46929 * 109.58786 * 239.71149 * 2 1 3
23 23 C 1.36930 * 120.62894 * 6.58211 * 22 2 1
24 24 H 1.08002 * 120.00226 * 330.44690 * 23 22 2
25 25 C 1.38811 * 120.00006 * 150.44996 * 23 22 2
26 26 N 1.31619 * 120.00058 * 335.93288 * 25 23 22
27 27 Si 1.86800 * 120.00219 * 155.92666 * 25 23 22
28 28 H 1.48500 * 109.47092 * 0.02562 * 27 25 23
29 29 H 1.48499 * 109.47357 * 240.00191 * 27 25 23
30 30 H 1.48500 * 109.47182 * 120.00206 * 27 25 23
31 31 H 1.09001 * 109.47050 * 180.28389 * 1 2 3
32 32 H 1.08998 * 109.47008 * 300.29350 * 1 2 3
33 33 H 1.09006 * 109.46499 * 60.28634 * 1 2 3
34 34 H 1.08998 * 109.50224 * 294.37129 * 4 2 1
35 35 H 1.09001 * 109.49998 * 54.43670 * 4 2 1
36 36 H 1.08998 * 109.45847 * 58.65505 * 5 4 2
37 37 H 1.09003 * 109.45600 * 178.61316 * 5 4 2
38 38 H 0.96999 * 120.00121 * 24.99899 * 8 6 5
39 39 H 1.07997 * 120.20997 * 359.97438 * 12 11 9
40 40 H 1.08001 * 119.05709 * 180.02562 * 13 12 11
41 41 H 1.08002 * 120.12982 * 359.97438 * 16 15 14
42 42 H 1.08002 * 119.47332 * 179.97438 * 17 16 15
43 43 H 1.08002 * 119.58527 * 180.02562 * 18 17 16
44 44 H 1.08003 * 120.17762 * 180.02562 * 19 18 17
45 45 H 1.08998 * 109.51499 * 185.70580 * 21 6 5
46 46 H 1.09003 * 109.43190 * 65.42107 * 21 6 5
47 47 H 0.97000 * 119.99605 * 354.64023 * 26 25 23
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8955 1.0268 0.0000
4 6 2.0435 -0.7309 1.2446
5 6 3.5675 -0.8494 1.1692
6 6 3.9569 -1.6658 -0.0654
7 1 5.0412 -1.7697 -0.1056
8 7 3.3411 -2.9928 0.0117
9 6 3.8979 -4.0329 -0.6398
10 8 4.9112 -3.8701 -1.2910
11 6 3.2758 -5.3726 -0.5625
12 6 2.1903 -5.6129 0.2701
13 6 1.6298 -6.8868 0.3184
14 7 2.0963 -7.8760 -0.4027
15 6 3.1368 -7.7185 -1.2248
16 6 3.6236 -8.7937 -1.9909
17 6 4.6857 -8.6052 -2.8202
18 6 5.3032 -7.3605 -2.9260
19 6 4.8592 -6.2967 -2.1997
20 6 3.7645 -6.4532 -1.3394
21 6 3.4645 -0.9505 -1.3221
22 7 2.0226 -0.6982 -1.1953
23 6 1.1537 -1.1109 -2.1698
24 1 0.1386 -1.3743 -1.9119
25 6 1.5777 -1.1909 -3.4892
26 7 2.5930 -0.4608 -3.8996
27 14 0.7074 -2.3349 -4.6822
28 1 -0.3940 -3.0395 -3.9782
29 1 1.6753 -3.3302 -5.2090
30 1 0.1486 -1.5440 -5.8080
31 1 -0.3633 -1.0277 0.0051
32 1 -0.3633 0.5184 0.8873
33 1 -0.3632 0.5094 -0.8926
34 1 1.7660 -0.1694 2.1367
35 1 1.6024 -1.7266 1.2896
36 1 4.0061 0.1459 1.0996
37 1 3.9377 -1.3474 2.0654
38 1 2.5326 -3.1229 0.5317
39 1 1.7842 -4.8170 0.8768
40 1 0.7857 -7.0642 0.9684
41 1 3.1566 -9.7649 -1.9203
42 1 5.0561 -9.4336 -3.4059
43 1 6.1444 -7.2375 -3.5921
44 1 5.3456 -5.3366 -2.2902
45 1 3.6504 -1.5773 -2.1942
46 1 3.9930 -0.0034 -1.4309
47 1 2.9952 0.1895 -3.3028
RHF calculation, no. of doubly occupied orbitals= 63
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001071663845.mol2 47
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 22:14:39
Heat of formation + Delta-G solvation = 45.538051 kcal
Electronic energy + Delta-G solvation = -30420.058991 eV
Core-core repulsion = 26568.265897 eV
Total energy + Delta-G solvation = -3851.793093 eV
No. of doubly occupied orbitals = 63
Molecular weight
(most abundant/longest-lived isotopes) = 339.169 amu
Computer time = 1.11 seconds
Orbital eigenvalues (eV)
-41.02907 -39.48176 -37.77447 -37.05789 -34.43386 -33.40869 -33.02847 -31.11839
-30.49151 -29.84861 -29.59479 -26.42907 -25.20477 -24.67509 -23.53755 -22.75779
-22.15810 -20.94925 -20.62154 -18.94910 -18.22085 -17.57897 -17.24545 -16.90452
-15.57153 -15.54712 -15.07561 -14.86212 -14.64755 -14.38476 -14.14490 -14.01089
-13.86070 -13.54858 -13.45495 -13.32285 -13.15571 -13.05611 -12.54643 -11.90622
-11.76821 -11.59198 -11.48590 -11.32039 -11.31263 -11.27575 -10.87896 -10.67197
-10.45275 -10.38748 -10.16005 -10.10650 -9.99138 -9.82840 -9.27953 -9.10411
-8.79149 -8.67587 -8.35726 -8.19285 -6.85545 -6.03861 -3.23976 0.15573
0.80522 1.80336 2.85132 3.25287 3.45843 3.49488 3.54411 3.64056
4.17914 4.23888 4.56461 4.61203 4.68374 4.75833 4.87367 5.08377
5.10916 5.17825 5.24558 5.26741 5.32342 5.34313 5.52483 5.54434
5.64704 5.79516 5.81350 5.93327 5.98814 6.03378 6.11359 6.15986
6.21714 6.28057 6.31279 6.33213 6.42542 6.44601 6.54445 6.59650
6.63864 6.87396 6.94203 6.98528 7.07219 7.16325 7.80139 7.83690
8.03871 8.49380 8.58486 9.11133 9.84932 10.29066 11.23352
Molecular weight = 339.17amu
Principal moments of inertia in cm(-1)
A = 0.011072 B = 0.004552 C = 0.004021
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2528.267637 B = 6150.017789 C = 6961.576369
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.133 4.133
2 C 0.167 3.833
3 H 0.023 0.977
4 C -0.131 4.131
5 C -0.119 4.119
6 C 0.124 3.876
7 H 0.081 0.919
8 N -0.687 5.687
9 C 0.559 3.441
10 O -0.531 6.531
11 C -0.056 4.056
12 C -0.142 4.142
13 C 0.127 3.873
14 N -0.464 5.464
15 C 0.124 3.876
16 C -0.104 4.104
17 C -0.097 4.097
18 C -0.124 4.124
19 C -0.093 4.093
20 C -0.066 4.066
21 C 0.141 3.859
22 N -0.589 5.589
23 C -0.347 4.347
24 H 0.059 0.941
25 C -0.018 4.018
26 N -0.913 5.913
27 Si 1.058 2.942
28 H -0.293 1.293
29 H -0.290 1.290
30 H -0.293 1.293
31 H 0.052 0.948
32 H 0.037 0.963
33 H 0.061 0.939
34 H 0.056 0.944
35 H 0.054 0.946
36 H 0.073 0.927
37 H 0.055 0.945
38 H 0.397 0.603
39 H 0.140 0.860
40 H 0.164 0.836
41 H 0.134 0.866
42 H 0.128 0.872
43 H 0.128 0.872
44 H 0.171 0.829
45 H 0.087 0.913
46 H 0.025 0.975
47 H 0.269 0.731
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 1.608 -10.288 10.698 14.929
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.190 4.190
2 C 0.060 3.940
3 H 0.041 0.959
4 C -0.170 4.170
5 C -0.157 4.157
6 C 0.018 3.982
7 H 0.099 0.901
8 N -0.337 5.337
9 C 0.345 3.655
10 O -0.410 6.410
11 C -0.068 4.068
12 C -0.163 4.163
13 C -0.045 4.045
14 N -0.173 5.173
15 C 0.002 3.998
16 C -0.122 4.122
17 C -0.117 4.117
18 C -0.142 4.142
19 C -0.111 4.111
20 C -0.069 4.069
21 C 0.014 3.986
22 N -0.314 5.314
23 C -0.476 4.476
24 H 0.077 0.923
25 C -0.221 4.221
26 N -0.553 5.553
27 Si 0.889 3.111
28 H -0.219 1.219
29 H -0.217 1.217
30 H -0.220 1.220
31 H 0.071 0.929
32 H 0.056 0.944
33 H 0.080 0.920
34 H 0.074 0.926
35 H 0.073 0.927
36 H 0.091 0.909
37 H 0.074 0.926
38 H 0.233 0.767
39 H 0.158 0.842
40 H 0.181 0.819
41 H 0.152 0.848
42 H 0.146 0.854
43 H 0.146 0.854
44 H 0.188 0.812
45 H 0.105 0.895
46 H 0.043 0.957
47 H 0.080 0.920
Dipole moment (debyes) X Y Z Total
from point charges 1.995 -11.586 8.649 14.595
hybrid contribution -0.268 1.418 1.742 2.262
sum 1.728 -10.168 10.391 14.640
Atomic orbital electron populations
1.21766 0.95821 1.01286 1.00157 1.20455 0.93204 0.93369 0.86942
0.95896 1.22069 0.94980 1.00726 0.99246 1.21701 0.97156 1.00206
0.96656 1.21620 0.97153 0.81442 0.97972 0.90106 1.45761 1.29150
1.08433 1.50366 1.17917 0.84175 0.83671 0.79759 1.90567 1.25224
1.84330 1.40886 1.20486 0.95906 0.94037 0.96346 1.22391 0.95642
0.99076 0.99191 1.22847 0.98034 0.87997 0.95664 1.67780 1.10435
1.33725 1.05356 1.18870 0.92764 0.92317 0.95842 1.20722 0.97135
0.97898 0.96481 1.20967 0.95401 0.97641 0.97678 1.21093 1.00586
0.92788 0.99752 1.22152 0.94252 1.01799 0.92896 1.18697 0.97508
0.92864 0.97839 1.21265 0.84998 0.96797 0.95558 1.44120 1.02191
1.65197 1.19848 1.19878 0.95970 1.43712 0.88001 0.92301 1.25712
1.00000 1.00652 0.95769 1.70718 1.25868 1.20799 1.37920 0.83622
0.75347 0.76346 0.75806 1.21889 1.21673 1.22044 0.92925 0.94443
0.92026 0.92572 0.92713 0.90880 0.92625 0.76674 0.84227 0.81897
0.84808 0.85424 0.85420 0.81193 0.89454 0.95716 0.91974
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.13 -2.35 7.95 37.16 0.30 -2.06 16
2 C 0.17 3.13 3.50 -67.60 -0.24 2.90 16
3 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16
4 C -0.13 -1.94 5.20 -26.61 -0.14 -2.08 16
5 C -0.12 -1.72 5.59 -26.68 -0.15 -1.87 16
6 C 0.12 2.19 2.81 -68.03 -0.19 2.00 16
7 H 0.08 1.45 7.58 -51.93 -0.39 1.06 16
8 N -0.69 -11.62 4.87 -54.83 -0.27 -11.88 16
9 C 0.56 10.30 7.72 -12.30 -0.09 10.21 16
10 O -0.53 -11.13 13.19 5.33 0.07 -11.06 16
11 C -0.06 -0.94 5.94 -104.34 -0.62 -1.56 16
12 C -0.14 -1.89 9.60 -38.95 -0.37 -2.26 16
13 C 0.13 1.58 11.14 -17.52 -0.20 1.38 16
14 N -0.46 -6.83 10.30 -11.00 -0.11 -6.94 16
15 C 0.12 1.92 6.61 -84.87 -0.56 1.36 16
16 C -0.10 -1.36 9.98 -39.43 -0.39 -1.75 16
17 C -0.10 -1.15 9.94 -39.95 -0.40 -1.54 16
18 C -0.12 -1.66 9.96 -39.88 -0.40 -2.06 16
19 C -0.09 -1.54 9.25 -39.60 -0.37 -1.90 16
20 C -0.07 -1.12 5.76 -106.52 -0.61 -1.74 16
21 C 0.14 3.15 4.26 -3.93 -0.02 3.13 16
22 N -0.59 -13.41 2.75 -165.04 -0.45 -13.87 16
23 C -0.35 -9.03 8.48 -15.06 -0.13 -9.16 16
24 H 0.06 1.54 6.29 -52.49 -0.33 1.21 16
25 C -0.02 -0.51 4.69 -17.43 -0.08 -0.60 16
26 N -0.91 -27.21 12.49 55.49 0.69 -26.51 16
27 Si 1.06 25.95 29.98 -169.99 -5.10 20.85 16
28 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16
29 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16
30 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16
31 H 0.05 0.94 7.44 -51.93 -0.39 0.56 16
32 H 0.04 0.54 8.14 -51.93 -0.42 0.12 16
33 H 0.06 1.22 7.62 -51.93 -0.40 0.83 16
34 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16
35 H 0.05 0.79 6.41 -51.93 -0.33 0.46 16
36 H 0.07 1.04 8.14 -51.93 -0.42 0.61 16
37 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16
38 H 0.40 5.93 4.95 -40.82 -0.20 5.73 16
39 H 0.14 1.48 6.55 -52.49 -0.34 1.13 16
40 H 0.16 1.39 8.06 -52.49 -0.42 0.97 16
41 H 0.13 1.46 8.06 -52.49 -0.42 1.04 16
42 H 0.13 1.08 8.06 -52.49 -0.42 0.66 16
43 H 0.13 1.40 8.06 -52.49 -0.42 0.98 16
44 H 0.17 3.11 4.98 -52.48 -0.26 2.85 16
45 H 0.09 2.34 6.43 -51.93 -0.33 2.01 16
46 H 0.03 0.57 7.85 -51.93 -0.41 0.17 16
47 H 0.27 8.03 6.70 -40.82 -0.27 7.76 16
LS Contribution 369.00 15.07 5.56 5.56
Total: -1.00 -32.20 369.00 -10.53 -42.72
By element:
Atomic # 1 Polarization: 14.98 SS G_CDS: -6.26 Total: 8.72 kcal
Atomic # 6 Polarization: -2.93 SS G_CDS: -4.66 Total: -7.59 kcal
Atomic # 7 Polarization: -59.07 SS G_CDS: -0.14 Total: -59.21 kcal
Atomic # 8 Polarization: -11.13 SS G_CDS: 0.07 Total: -11.06 kcal
Atomic # 14 Polarization: 25.95 SS G_CDS: -5.10 Total: 20.85 kcal
Total LS contribution 5.56 Total: 5.56 kcal
Total: -32.20 -10.53 -42.72 kcal
The number of atoms in the molecule is 47
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001071663845.mol2 47
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 88.261 kcal
(2) G-P(sol) polarization free energy of solvation -32.196 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.065 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.527 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.723 kcal
(6) G-S(sol) free energy of system = (1) + (5) 45.538 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.11 seconds