Wall clock time and date at job start Tue Mar 31 2020 22:14:37
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53004 * 1
3 3 H 1.08992 * 109.58975 * 2 1
4 4 C 1.53191 * 109.58227 * 120.42332 * 2 1 3
5 5 C 1.53049 * 109.31147 * 174.42148 * 4 2 1
6 6 C 1.53044 * 109.53694 * 298.63282 * 5 4 2
7 7 H 1.08998 * 109.49644 * 181.31668 * 6 5 4
8 8 N 1.46499 * 109.49764 * 301.38234 * 6 5 4
9 9 C 1.34773 * 119.99737 * 205.00059 * 8 6 5
10 10 O 1.21542 * 120.00279 * 0.02562 * 9 8 6
11 11 C 1.47909 * 120.00003 * 180.02562 * 9 8 6
12 12 C 1.38898 * 121.10883 * 354.07453 * 11 9 8
13 13 C 1.39268 * 119.57518 * 180.02562 * 12 11 9
14 14 N 1.30999 * 121.88895 * 359.97438 * 13 12 11
15 15 C 1.33540 * 121.82467 * 0.03036 * 14 13 12
16 16 C 1.40710 * 120.97186 * 179.97438 * 15 14 13
17 17 C 1.36058 * 119.74008 * 180.02562 * 16 15 14
18 18 C 1.39347 * 121.05790 * 359.97438 * 17 16 15
19 19 C 1.36250 * 120.83664 * 0.02562 * 18 17 16
20 20 C 1.40104 * 119.64545 * 359.72746 * 19 18 17
21 21 C 1.52756 * 109.38258 * 61.24070 * 6 5 4
22 22 N 1.46929 * 109.58786 * 239.71149 * 2 1 3
23 23 C 1.36930 * 120.62894 * 6.58211 * 22 2 1
24 24 H 1.08002 * 120.00226 * 330.44690 * 23 22 2
25 25 C 1.38811 * 120.00006 * 150.44996 * 23 22 2
26 26 N 1.31619 * 120.00058 * 335.93288 * 25 23 22
27 27 Si 1.86800 * 120.00219 * 155.92666 * 25 23 22
28 28 H 1.48500 * 109.47092 * 0.02562 * 27 25 23
29 29 H 1.48499 * 109.47357 * 240.00191 * 27 25 23
30 30 H 1.48500 * 109.47182 * 120.00206 * 27 25 23
31 31 H 1.09001 * 109.47050 * 180.28389 * 1 2 3
32 32 H 1.08998 * 109.47008 * 300.29350 * 1 2 3
33 33 H 1.09006 * 109.46499 * 60.28634 * 1 2 3
34 34 H 1.08998 * 109.50224 * 294.37129 * 4 2 1
35 35 H 1.09001 * 109.49998 * 54.43670 * 4 2 1
36 36 H 1.08998 * 109.45847 * 58.65505 * 5 4 2
37 37 H 1.09003 * 109.45600 * 178.61316 * 5 4 2
38 38 H 0.96999 * 120.00121 * 24.99899 * 8 6 5
39 39 H 1.07997 * 120.20997 * 359.97438 * 12 11 9
40 40 H 1.08001 * 119.05709 * 180.02562 * 13 12 11
41 41 H 1.08002 * 120.12982 * 359.97438 * 16 15 14
42 42 H 1.08002 * 119.47332 * 179.97438 * 17 16 15
43 43 H 1.08002 * 119.58527 * 180.02562 * 18 17 16
44 44 H 1.08003 * 120.17762 * 180.02562 * 19 18 17
45 45 H 1.08998 * 109.51499 * 185.70580 * 21 6 5
46 46 H 1.09003 * 109.43190 * 65.42107 * 21 6 5
47 47 H 0.97000 * 119.99605 * 354.64023 * 26 25 23
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8955 1.0268 0.0000
4 6 2.0435 -0.7309 1.2446
5 6 3.5675 -0.8494 1.1692
6 6 3.9569 -1.6658 -0.0654
7 1 5.0412 -1.7697 -0.1056
8 7 3.3411 -2.9928 0.0117
9 6 3.8979 -4.0329 -0.6398
10 8 4.9112 -3.8701 -1.2910
11 6 3.2758 -5.3726 -0.5625
12 6 2.1903 -5.6129 0.2701
13 6 1.6298 -6.8868 0.3184
14 7 2.0963 -7.8760 -0.4027
15 6 3.1368 -7.7185 -1.2248
16 6 3.6236 -8.7937 -1.9909
17 6 4.6857 -8.6052 -2.8202
18 6 5.3032 -7.3605 -2.9260
19 6 4.8592 -6.2967 -2.1997
20 6 3.7645 -6.4532 -1.3394
21 6 3.4645 -0.9505 -1.3221
22 7 2.0226 -0.6982 -1.1953
23 6 1.1537 -1.1109 -2.1698
24 1 0.1386 -1.3743 -1.9119
25 6 1.5777 -1.1909 -3.4892
26 7 2.5930 -0.4608 -3.8996
27 14 0.7074 -2.3349 -4.6822
28 1 -0.3940 -3.0395 -3.9782
29 1 1.6753 -3.3302 -5.2090
30 1 0.1486 -1.5440 -5.8080
31 1 -0.3633 -1.0277 0.0051
32 1 -0.3633 0.5184 0.8873
33 1 -0.3632 0.5094 -0.8926
34 1 1.7660 -0.1694 2.1367
35 1 1.6024 -1.7266 1.2896
36 1 4.0061 0.1459 1.0996
37 1 3.9377 -1.3474 2.0654
38 1 2.5326 -3.1229 0.5317
39 1 1.7842 -4.8170 0.8768
40 1 0.7857 -7.0642 0.9684
41 1 3.1566 -9.7649 -1.9203
42 1 5.0561 -9.4336 -3.4059
43 1 6.1444 -7.2375 -3.5921
44 1 5.3456 -5.3366 -2.2902
45 1 3.6504 -1.5773 -2.1942
46 1 3.9930 -0.0034 -1.4309
47 1 2.9952 0.1895 -3.3028
RHF calculation, no. of doubly occupied orbitals= 63
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001071663845.mol2 47
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 22:14:37
Heat of formation + Delta-G solvation = 25.628753 kcal
Electronic energy + Delta-G solvation = -30420.922323 eV
Core-core repulsion = 26568.265897 eV
Total energy + Delta-G solvation = -3852.656425 eV
No. of doubly occupied orbitals = 63
Molecular weight
(most abundant/longest-lived isotopes) = 339.169 amu
Computer time = 1.11 seconds
Orbital eigenvalues (eV)
-42.18184 -40.86006 -39.28772 -38.09838 -36.05083 -34.79061 -34.52372 -32.46292
-31.60576 -31.54393 -30.78685 -27.96638 -26.88178 -25.97751 -24.58596 -23.98765
-23.76981 -22.37096 -22.02204 -20.53497 -19.37742 -18.82359 -18.69017 -18.31005
-17.04357 -16.84519 -16.44111 -16.22528 -15.89965 -15.76078 -15.59066 -15.44667
-15.30091 -14.90249 -14.85390 -14.79044 -14.39283 -14.19445 -13.88972 -13.49644
-13.18618 -13.03605 -12.81056 -12.68948 -12.65375 -12.61388 -12.35185 -12.32530
-12.02950 -11.85059 -11.65235 -11.56001 -11.39392 -11.34452 -11.06941 -10.47270
-10.35010 -10.15538 -9.82647 -9.30691 -8.82533 -8.15621 -5.33929 -0.96243
-0.24135 0.66350 1.46620 1.55097 1.66402 1.71931 1.97507 2.17830
2.59871 3.07839 3.25346 3.27116 3.45671 3.49507 3.61723 3.67541
3.84340 3.89389 3.99195 4.08468 4.14343 4.20830 4.33614 4.37987
4.50877 4.52600 4.56087 4.63575 4.68006 4.76276 4.77656 4.93254
4.95158 5.03201 5.04364 5.10912 5.14491 5.21673 5.25348 5.32053
5.43692 5.48639 5.49613 5.57107 5.60732 5.86907 5.96713 6.43143
6.47399 6.77169 7.11549 7.14056 7.83724 8.29963 9.07504
Molecular weight = 339.17amu
Principal moments of inertia in cm(-1)
A = 0.011072 B = 0.004552 C = 0.004021
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2528.267637 B = 6150.017789 C = 6961.576369
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.126 4.126
2 C 0.155 3.845
3 H 0.014 0.986
4 C -0.120 4.120
5 C -0.110 4.110
6 C 0.133 3.867
7 H 0.073 0.927
8 N -0.678 5.678
9 C 0.552 3.448
10 O -0.569 6.569
11 C -0.093 4.093
12 C -0.124 4.124
13 C 0.128 3.872
14 N -0.472 5.472
15 C 0.102 3.898
16 C -0.104 4.104
17 C -0.092 4.092
18 C -0.116 4.116
19 C -0.133 4.133
20 C -0.089 4.089
21 C 0.151 3.849
22 N -0.601 5.601
23 C -0.322 4.322
24 H 0.063 0.937
25 C -0.078 4.078
26 N -0.952 5.952
27 Si 1.094 2.906
28 H -0.267 1.267
29 H -0.307 1.307
30 H -0.291 1.291
31 H 0.051 0.949
32 H 0.076 0.924
33 H 0.030 0.970
34 H 0.094 0.906
35 H 0.065 0.935
36 H 0.076 0.924
37 H 0.091 0.909
38 H 0.409 0.591
39 H 0.170 0.830
40 H 0.210 0.790
41 H 0.159 0.841
42 H 0.169 0.831
43 H 0.148 0.852
44 H 0.141 0.859
45 H 0.034 0.966
46 H 0.005 0.995
47 H 0.253 0.747
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -0.478 -12.369 13.768 18.514
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.183 4.183
2 C 0.050 3.950
3 H 0.031 0.969
4 C -0.158 4.158
5 C -0.148 4.148
6 C 0.026 3.974
7 H 0.091 0.909
8 N -0.329 5.329
9 C 0.339 3.661
10 O -0.450 6.450
11 C -0.104 4.104
12 C -0.144 4.144
13 C -0.044 4.044
14 N -0.180 5.180
15 C -0.019 4.019
16 C -0.122 4.122
17 C -0.111 4.111
18 C -0.134 4.134
19 C -0.152 4.152
20 C -0.092 4.092
21 C 0.024 3.976
22 N -0.326 5.326
23 C -0.452 4.452
24 H 0.081 0.919
25 C -0.275 4.275
26 N -0.596 5.596
27 Si 0.922 3.078
28 H -0.191 1.191
29 H -0.235 1.235
30 H -0.218 1.218
31 H 0.070 0.930
32 H 0.095 0.905
33 H 0.049 0.951
34 H 0.112 0.888
35 H 0.083 0.917
36 H 0.095 0.905
37 H 0.110 0.890
38 H 0.247 0.753
39 H 0.187 0.813
40 H 0.226 0.774
41 H 0.176 0.824
42 H 0.187 0.813
43 H 0.165 0.835
44 H 0.158 0.842
45 H 0.053 0.947
46 H 0.023 0.977
47 H 0.064 0.936
Dipole moment (debyes) X Y Z Total
from point charges -0.130 -13.668 11.774 18.041
hybrid contribution 0.363 2.076 0.840 2.269
sum 0.233 -11.592 12.614 17.133
Atomic orbital electron populations
1.21697 0.94706 1.01319 1.00581 1.20782 0.94226 0.93087 0.86918
0.96856 1.21964 0.94654 1.01177 0.98041 1.21687 0.97319 1.00004
0.95798 1.21386 0.96678 0.81946 0.97346 0.90932 1.45641 1.29441
1.07655 1.50153 1.18395 0.83832 0.84834 0.79020 1.90562 1.27000
1.85123 1.42334 1.20465 0.98039 0.92983 0.98880 1.22782 0.93674
1.00417 0.97544 1.23601 0.98524 0.87008 0.95249 1.67865 1.10147
1.34513 1.05508 1.19203 0.93400 0.92368 0.96902 1.21120 0.97165
0.98250 0.95705 1.21355 0.94592 0.97815 0.97382 1.21418 1.00623
0.92749 0.98585 1.22011 0.95824 1.01784 0.95560 1.18917 0.98011
0.93881 0.98388 1.20978 0.85171 0.95378 0.96079 1.44312 1.01798
1.65962 1.20523 1.20092 0.96222 1.40674 0.88257 0.91925 1.26689
1.00741 1.02036 0.98007 1.70819 1.28163 1.22625 1.37971 0.83121
0.74909 0.74896 0.74847 1.19150 1.23493 1.21780 0.93012 0.90512
0.95120 0.88803 0.91677 0.90524 0.89045 0.75295 0.81257 0.77360
0.82352 0.81345 0.83471 0.84195 0.94735 0.97737 0.93645
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.13 -4.13 7.95 71.98 0.57 -3.56 16
2 C 0.15 5.55 3.50 44.98 0.16 5.71 16
3 H 0.01 0.52 8.14 -2.39 -0.02 0.50 16
4 C -0.12 -3.06 5.20 30.67 0.16 -2.90 16
5 C -0.11 -2.88 5.59 30.63 0.17 -2.70 16
6 C 0.13 4.72 2.81 44.93 0.13 4.85 16
7 H 0.07 2.71 7.58 -2.39 -0.02 2.69 16
8 N -0.68 -22.71 4.87 -445.67 -2.17 -24.88 16
9 C 0.55 21.17 7.72 86.81 0.67 21.84 16
10 O -0.57 -25.90 13.19 -3.85 -0.05 -25.95 16
11 C -0.09 -3.10 5.94 -19.68 -0.12 -3.22 16
12 C -0.12 -3.01 9.60 22.68 0.22 -2.79 16
13 C 0.13 2.79 11.14 85.06 0.95 3.74 16
14 N -0.47 -12.80 10.30 -188.73 -1.94 -14.75 16
15 C 0.10 3.09 6.61 40.34 0.27 3.35 16
16 C -0.10 -2.52 9.98 22.37 0.22 -2.30 16
17 C -0.09 -2.00 9.94 22.03 0.22 -1.78 16
18 C -0.12 -3.12 9.96 22.07 0.22 -2.90 16
19 C -0.13 -4.70 9.25 22.26 0.21 -4.49 16
20 C -0.09 -3.09 5.76 -21.09 -0.12 -3.22 16
21 C 0.15 7.11 4.26 86.22 0.37 7.48 16
22 N -0.60 -27.70 2.75 -676.06 -1.86 -29.56 16
23 C -0.32 -17.04 8.48 84.03 0.71 -16.33 16
24 H 0.06 3.25 6.29 -2.91 -0.02 3.23 16
25 C -0.08 -4.53 4.69 84.86 0.40 -4.13 16
26 N -0.95 -60.16 12.49 21.65 0.27 -59.89 16
27 Si 1.09 54.02 29.98 68.60 2.06 56.07 16
28 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16
29 H -0.31 -15.86 7.11 99.48 0.71 -15.15 16
30 H -0.29 -14.08 7.11 99.48 0.71 -13.37 16
31 H 0.05 1.70 7.44 -2.39 -0.02 1.68 16
32 H 0.08 1.92 8.14 -2.39 -0.02 1.91 16
33 H 0.03 1.17 7.62 -2.38 -0.02 1.15 16
34 H 0.09 1.82 8.14 -2.39 -0.02 1.80 16
35 H 0.06 1.57 6.41 -2.39 -0.02 1.55 16
36 H 0.08 1.99 8.14 -2.39 -0.02 1.97 16
37 H 0.09 1.85 8.14 -2.39 -0.02 1.83 16
38 H 0.41 11.28 4.95 -92.71 -0.46 10.82 16
39 H 0.17 2.93 6.55 -2.91 -0.02 2.91 16
40 H 0.21 2.49 8.06 -2.91 -0.02 2.47 16
41 H 0.16 2.97 8.06 -2.91 -0.02 2.95 16
42 H 0.17 2.23 8.06 -2.91 -0.02 2.20 16
43 H 0.15 3.21 8.06 -2.91 -0.02 3.18 16
44 H 0.14 5.74 4.98 -2.91 -0.01 5.72 16
45 H 0.03 1.99 6.43 -2.39 -0.02 1.97 16
46 H 0.00 0.24 7.85 -2.39 -0.02 0.22 16
47 H 0.25 16.22 6.70 -92.71 -0.62 15.60 16
Total: -1.00 -78.04 369.00 2.39 -75.64
By element:
Atomic # 1 Polarization: 25.97 SS G_CDS: 0.69 Total: 26.66 kcal
Atomic # 6 Polarization: -8.74 SS G_CDS: 5.40 Total: -3.35 kcal
Atomic # 7 Polarization: -123.37 SS G_CDS: -5.70 Total: -129.08 kcal
Atomic # 8 Polarization: -25.90 SS G_CDS: -0.05 Total: -25.95 kcal
Atomic # 14 Polarization: 54.02 SS G_CDS: 2.06 Total: 56.07 kcal
Total: -78.04 2.39 -75.64 kcal
The number of atoms in the molecule is 47
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001071663845.mol2 47
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 101.274 kcal
(2) G-P(sol) polarization free energy of solvation -78.038 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.236 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.393 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.645 kcal
(6) G-S(sol) free energy of system = (1) + (5) 25.629 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.11 seconds