Wall clock time and date at job start Tue Mar 31 2020 22:14:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08992 * 109.58975 * 2 1 4 4 C 1.53191 * 109.58227 * 120.42332 * 2 1 3 5 5 C 1.53049 * 109.31147 * 174.42148 * 4 2 1 6 6 C 1.53044 * 109.53694 * 298.63282 * 5 4 2 7 7 H 1.08998 * 109.49644 * 181.31668 * 6 5 4 8 8 N 1.46499 * 109.49764 * 301.38234 * 6 5 4 9 9 C 1.34773 * 119.99737 * 205.00059 * 8 6 5 10 10 O 1.21542 * 120.00279 * 0.02562 * 9 8 6 11 11 C 1.47909 * 120.00003 * 180.02562 * 9 8 6 12 12 C 1.38898 * 121.10883 * 354.07453 * 11 9 8 13 13 C 1.39268 * 119.57518 * 180.02562 * 12 11 9 14 14 N 1.30999 * 121.88895 * 359.97438 * 13 12 11 15 15 C 1.33540 * 121.82467 * 0.03036 * 14 13 12 16 16 C 1.40710 * 120.97186 * 179.97438 * 15 14 13 17 17 C 1.36058 * 119.74008 * 180.02562 * 16 15 14 18 18 C 1.39347 * 121.05790 * 359.97438 * 17 16 15 19 19 C 1.36250 * 120.83664 * 0.02562 * 18 17 16 20 20 C 1.40104 * 119.64545 * 359.72746 * 19 18 17 21 21 C 1.52756 * 109.38258 * 61.24070 * 6 5 4 22 22 N 1.46929 * 109.58786 * 239.71149 * 2 1 3 23 23 C 1.36930 * 120.62894 * 6.58211 * 22 2 1 24 24 H 1.08002 * 120.00226 * 330.44690 * 23 22 2 25 25 C 1.38811 * 120.00006 * 150.44996 * 23 22 2 26 26 N 1.31619 * 120.00058 * 335.93288 * 25 23 22 27 27 Si 1.86800 * 120.00219 * 155.92666 * 25 23 22 28 28 H 1.48500 * 109.47092 * 0.02562 * 27 25 23 29 29 H 1.48499 * 109.47357 * 240.00191 * 27 25 23 30 30 H 1.48500 * 109.47182 * 120.00206 * 27 25 23 31 31 H 1.09001 * 109.47050 * 180.28389 * 1 2 3 32 32 H 1.08998 * 109.47008 * 300.29350 * 1 2 3 33 33 H 1.09006 * 109.46499 * 60.28634 * 1 2 3 34 34 H 1.08998 * 109.50224 * 294.37129 * 4 2 1 35 35 H 1.09001 * 109.49998 * 54.43670 * 4 2 1 36 36 H 1.08998 * 109.45847 * 58.65505 * 5 4 2 37 37 H 1.09003 * 109.45600 * 178.61316 * 5 4 2 38 38 H 0.96999 * 120.00121 * 24.99899 * 8 6 5 39 39 H 1.07997 * 120.20997 * 359.97438 * 12 11 9 40 40 H 1.08001 * 119.05709 * 180.02562 * 13 12 11 41 41 H 1.08002 * 120.12982 * 359.97438 * 16 15 14 42 42 H 1.08002 * 119.47332 * 179.97438 * 17 16 15 43 43 H 1.08002 * 119.58527 * 180.02562 * 18 17 16 44 44 H 1.08003 * 120.17762 * 180.02562 * 19 18 17 45 45 H 1.08998 * 109.51499 * 185.70580 * 21 6 5 46 46 H 1.09003 * 109.43190 * 65.42107 * 21 6 5 47 47 H 0.97000 * 119.99605 * 354.64023 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8955 1.0268 0.0000 4 6 2.0435 -0.7309 1.2446 5 6 3.5675 -0.8494 1.1692 6 6 3.9569 -1.6658 -0.0654 7 1 5.0412 -1.7697 -0.1056 8 7 3.3411 -2.9928 0.0117 9 6 3.8979 -4.0329 -0.6398 10 8 4.9112 -3.8701 -1.2910 11 6 3.2758 -5.3726 -0.5625 12 6 2.1903 -5.6129 0.2701 13 6 1.6298 -6.8868 0.3184 14 7 2.0963 -7.8760 -0.4027 15 6 3.1368 -7.7185 -1.2248 16 6 3.6236 -8.7937 -1.9909 17 6 4.6857 -8.6052 -2.8202 18 6 5.3032 -7.3605 -2.9260 19 6 4.8592 -6.2967 -2.1997 20 6 3.7645 -6.4532 -1.3394 21 6 3.4645 -0.9505 -1.3221 22 7 2.0226 -0.6982 -1.1953 23 6 1.1537 -1.1109 -2.1698 24 1 0.1386 -1.3743 -1.9119 25 6 1.5777 -1.1909 -3.4892 26 7 2.5930 -0.4608 -3.8996 27 14 0.7074 -2.3349 -4.6822 28 1 -0.3940 -3.0395 -3.9782 29 1 1.6753 -3.3302 -5.2090 30 1 0.1486 -1.5440 -5.8080 31 1 -0.3633 -1.0277 0.0051 32 1 -0.3633 0.5184 0.8873 33 1 -0.3632 0.5094 -0.8926 34 1 1.7660 -0.1694 2.1367 35 1 1.6024 -1.7266 1.2896 36 1 4.0061 0.1459 1.0996 37 1 3.9377 -1.3474 2.0654 38 1 2.5326 -3.1229 0.5317 39 1 1.7842 -4.8170 0.8768 40 1 0.7857 -7.0642 0.9684 41 1 3.1566 -9.7649 -1.9203 42 1 5.0561 -9.4336 -3.4059 43 1 6.1444 -7.2375 -3.5921 44 1 5.3456 -5.3366 -2.2902 45 1 3.6504 -1.5773 -2.1942 46 1 3.9930 -0.0034 -1.4309 47 1 2.9952 0.1895 -3.3028 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001071663845.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:14:37 Heat of formation + Delta-G solvation = 25.628753 kcal Electronic energy + Delta-G solvation = -30420.922323 eV Core-core repulsion = 26568.265897 eV Total energy + Delta-G solvation = -3852.656425 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -42.18184 -40.86006 -39.28772 -38.09838 -36.05083 -34.79061 -34.52372 -32.46292 -31.60576 -31.54393 -30.78685 -27.96638 -26.88178 -25.97751 -24.58596 -23.98765 -23.76981 -22.37096 -22.02204 -20.53497 -19.37742 -18.82359 -18.69017 -18.31005 -17.04357 -16.84519 -16.44111 -16.22528 -15.89965 -15.76078 -15.59066 -15.44667 -15.30091 -14.90249 -14.85390 -14.79044 -14.39283 -14.19445 -13.88972 -13.49644 -13.18618 -13.03605 -12.81056 -12.68948 -12.65375 -12.61388 -12.35185 -12.32530 -12.02950 -11.85059 -11.65235 -11.56001 -11.39392 -11.34452 -11.06941 -10.47270 -10.35010 -10.15538 -9.82647 -9.30691 -8.82533 -8.15621 -5.33929 -0.96243 -0.24135 0.66350 1.46620 1.55097 1.66402 1.71931 1.97507 2.17830 2.59871 3.07839 3.25346 3.27116 3.45671 3.49507 3.61723 3.67541 3.84340 3.89389 3.99195 4.08468 4.14343 4.20830 4.33614 4.37987 4.50877 4.52600 4.56087 4.63575 4.68006 4.76276 4.77656 4.93254 4.95158 5.03201 5.04364 5.10912 5.14491 5.21673 5.25348 5.32053 5.43692 5.48639 5.49613 5.57107 5.60732 5.86907 5.96713 6.43143 6.47399 6.77169 7.11549 7.14056 7.83724 8.29963 9.07504 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.011072 B = 0.004552 C = 0.004021 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2528.267637 B = 6150.017789 C = 6961.576369 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C 0.155 3.845 3 H 0.014 0.986 4 C -0.120 4.120 5 C -0.110 4.110 6 C 0.133 3.867 7 H 0.073 0.927 8 N -0.678 5.678 9 C 0.552 3.448 10 O -0.569 6.569 11 C -0.093 4.093 12 C -0.124 4.124 13 C 0.128 3.872 14 N -0.472 5.472 15 C 0.102 3.898 16 C -0.104 4.104 17 C -0.092 4.092 18 C -0.116 4.116 19 C -0.133 4.133 20 C -0.089 4.089 21 C 0.151 3.849 22 N -0.601 5.601 23 C -0.322 4.322 24 H 0.063 0.937 25 C -0.078 4.078 26 N -0.952 5.952 27 Si 1.094 2.906 28 H -0.267 1.267 29 H -0.307 1.307 30 H -0.291 1.291 31 H 0.051 0.949 32 H 0.076 0.924 33 H 0.030 0.970 34 H 0.094 0.906 35 H 0.065 0.935 36 H 0.076 0.924 37 H 0.091 0.909 38 H 0.409 0.591 39 H 0.170 0.830 40 H 0.210 0.790 41 H 0.159 0.841 42 H 0.169 0.831 43 H 0.148 0.852 44 H 0.141 0.859 45 H 0.034 0.966 46 H 0.005 0.995 47 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.478 -12.369 13.768 18.514 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.050 3.950 3 H 0.031 0.969 4 C -0.158 4.158 5 C -0.148 4.148 6 C 0.026 3.974 7 H 0.091 0.909 8 N -0.329 5.329 9 C 0.339 3.661 10 O -0.450 6.450 11 C -0.104 4.104 12 C -0.144 4.144 13 C -0.044 4.044 14 N -0.180 5.180 15 C -0.019 4.019 16 C -0.122 4.122 17 C -0.111 4.111 18 C -0.134 4.134 19 C -0.152 4.152 20 C -0.092 4.092 21 C 0.024 3.976 22 N -0.326 5.326 23 C -0.452 4.452 24 H 0.081 0.919 25 C -0.275 4.275 26 N -0.596 5.596 27 Si 0.922 3.078 28 H -0.191 1.191 29 H -0.235 1.235 30 H -0.218 1.218 31 H 0.070 0.930 32 H 0.095 0.905 33 H 0.049 0.951 34 H 0.112 0.888 35 H 0.083 0.917 36 H 0.095 0.905 37 H 0.110 0.890 38 H 0.247 0.753 39 H 0.187 0.813 40 H 0.226 0.774 41 H 0.176 0.824 42 H 0.187 0.813 43 H 0.165 0.835 44 H 0.158 0.842 45 H 0.053 0.947 46 H 0.023 0.977 47 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -0.130 -13.668 11.774 18.041 hybrid contribution 0.363 2.076 0.840 2.269 sum 0.233 -11.592 12.614 17.133 Atomic orbital electron populations 1.21697 0.94706 1.01319 1.00581 1.20782 0.94226 0.93087 0.86918 0.96856 1.21964 0.94654 1.01177 0.98041 1.21687 0.97319 1.00004 0.95798 1.21386 0.96678 0.81946 0.97346 0.90932 1.45641 1.29441 1.07655 1.50153 1.18395 0.83832 0.84834 0.79020 1.90562 1.27000 1.85123 1.42334 1.20465 0.98039 0.92983 0.98880 1.22782 0.93674 1.00417 0.97544 1.23601 0.98524 0.87008 0.95249 1.67865 1.10147 1.34513 1.05508 1.19203 0.93400 0.92368 0.96902 1.21120 0.97165 0.98250 0.95705 1.21355 0.94592 0.97815 0.97382 1.21418 1.00623 0.92749 0.98585 1.22011 0.95824 1.01784 0.95560 1.18917 0.98011 0.93881 0.98388 1.20978 0.85171 0.95378 0.96079 1.44312 1.01798 1.65962 1.20523 1.20092 0.96222 1.40674 0.88257 0.91925 1.26689 1.00741 1.02036 0.98007 1.70819 1.28163 1.22625 1.37971 0.83121 0.74909 0.74896 0.74847 1.19150 1.23493 1.21780 0.93012 0.90512 0.95120 0.88803 0.91677 0.90524 0.89045 0.75295 0.81257 0.77360 0.82352 0.81345 0.83471 0.84195 0.94735 0.97737 0.93645 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.13 7.95 71.98 0.57 -3.56 16 2 C 0.15 5.55 3.50 44.98 0.16 5.71 16 3 H 0.01 0.52 8.14 -2.39 -0.02 0.50 16 4 C -0.12 -3.06 5.20 30.67 0.16 -2.90 16 5 C -0.11 -2.88 5.59 30.63 0.17 -2.70 16 6 C 0.13 4.72 2.81 44.93 0.13 4.85 16 7 H 0.07 2.71 7.58 -2.39 -0.02 2.69 16 8 N -0.68 -22.71 4.87 -445.67 -2.17 -24.88 16 9 C 0.55 21.17 7.72 86.81 0.67 21.84 16 10 O -0.57 -25.90 13.19 -3.85 -0.05 -25.95 16 11 C -0.09 -3.10 5.94 -19.68 -0.12 -3.22 16 12 C -0.12 -3.01 9.60 22.68 0.22 -2.79 16 13 C 0.13 2.79 11.14 85.06 0.95 3.74 16 14 N -0.47 -12.80 10.30 -188.73 -1.94 -14.75 16 15 C 0.10 3.09 6.61 40.34 0.27 3.35 16 16 C -0.10 -2.52 9.98 22.37 0.22 -2.30 16 17 C -0.09 -2.00 9.94 22.03 0.22 -1.78 16 18 C -0.12 -3.12 9.96 22.07 0.22 -2.90 16 19 C -0.13 -4.70 9.25 22.26 0.21 -4.49 16 20 C -0.09 -3.09 5.76 -21.09 -0.12 -3.22 16 21 C 0.15 7.11 4.26 86.22 0.37 7.48 16 22 N -0.60 -27.70 2.75 -676.06 -1.86 -29.56 16 23 C -0.32 -17.04 8.48 84.03 0.71 -16.33 16 24 H 0.06 3.25 6.29 -2.91 -0.02 3.23 16 25 C -0.08 -4.53 4.69 84.86 0.40 -4.13 16 26 N -0.95 -60.16 12.49 21.65 0.27 -59.89 16 27 Si 1.09 54.02 29.98 68.60 2.06 56.07 16 28 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 29 H -0.31 -15.86 7.11 99.48 0.71 -15.15 16 30 H -0.29 -14.08 7.11 99.48 0.71 -13.37 16 31 H 0.05 1.70 7.44 -2.39 -0.02 1.68 16 32 H 0.08 1.92 8.14 -2.39 -0.02 1.91 16 33 H 0.03 1.17 7.62 -2.38 -0.02 1.15 16 34 H 0.09 1.82 8.14 -2.39 -0.02 1.80 16 35 H 0.06 1.57 6.41 -2.39 -0.02 1.55 16 36 H 0.08 1.99 8.14 -2.39 -0.02 1.97 16 37 H 0.09 1.85 8.14 -2.39 -0.02 1.83 16 38 H 0.41 11.28 4.95 -92.71 -0.46 10.82 16 39 H 0.17 2.93 6.55 -2.91 -0.02 2.91 16 40 H 0.21 2.49 8.06 -2.91 -0.02 2.47 16 41 H 0.16 2.97 8.06 -2.91 -0.02 2.95 16 42 H 0.17 2.23 8.06 -2.91 -0.02 2.20 16 43 H 0.15 3.21 8.06 -2.91 -0.02 3.18 16 44 H 0.14 5.74 4.98 -2.91 -0.01 5.72 16 45 H 0.03 1.99 6.43 -2.39 -0.02 1.97 16 46 H 0.00 0.24 7.85 -2.39 -0.02 0.22 16 47 H 0.25 16.22 6.70 -92.71 -0.62 15.60 16 Total: -1.00 -78.04 369.00 2.39 -75.64 By element: Atomic # 1 Polarization: 25.97 SS G_CDS: 0.69 Total: 26.66 kcal Atomic # 6 Polarization: -8.74 SS G_CDS: 5.40 Total: -3.35 kcal Atomic # 7 Polarization: -123.37 SS G_CDS: -5.70 Total: -129.08 kcal Atomic # 8 Polarization: -25.90 SS G_CDS: -0.05 Total: -25.95 kcal Atomic # 14 Polarization: 54.02 SS G_CDS: 2.06 Total: 56.07 kcal Total: -78.04 2.39 -75.64 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071663845.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.274 kcal (2) G-P(sol) polarization free energy of solvation -78.038 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.236 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.393 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.645 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.629 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds