Wall clock time and date at job start Tue Mar 31 2020 22:14:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.09003 * 109.58538 * 2 1 4 4 C 1.53191 * 109.58563 * 239.57695 * 2 1 3 5 5 C 1.53046 * 109.30885 * 185.57559 * 4 2 1 6 6 C 1.53040 * 109.53868 * 61.36546 * 5 4 2 7 7 H 1.09004 * 109.52397 * 58.59765 * 6 5 4 8 8 N 1.46493 * 109.49820 * 178.68051 * 6 5 4 9 9 C 1.34778 * 120.00173 * 204.83855 * 8 6 5 10 10 O 1.21540 * 120.00053 * 0.02562 * 9 8 6 11 11 C 1.47902 * 120.00023 * 179.97438 * 9 8 6 12 12 C 1.38890 * 121.11429 * 354.32581 * 11 9 8 13 13 C 1.39271 * 119.57692 * 179.97438 * 12 11 9 14 14 N 1.30995 * 121.88732 * 359.97438 * 13 12 11 15 15 C 1.33532 * 121.82531 * 359.97438 * 14 13 12 16 16 C 1.40718 * 120.97367 * 180.02562 * 15 14 13 17 17 C 1.36063 * 119.74333 * 180.02562 * 16 15 14 18 18 C 1.39357 * 121.05071 * 359.97438 * 17 16 15 19 19 C 1.36246 * 120.83982 * 0.02862 * 18 17 16 20 20 C 1.40101 * 119.64330 * 359.97438 * 19 18 17 21 21 C 1.53186 * 109.31206 * 298.63456 * 6 5 4 22 22 N 1.46923 * 109.58705 * 120.28676 * 2 1 3 23 23 C 1.36937 * 120.62950 * 353.37440 * 22 2 1 24 24 H 1.07995 * 120.00054 * 29.78676 * 23 22 2 25 25 C 1.38821 * 119.99674 * 209.78905 * 23 22 2 26 26 N 1.31613 * 120.00288 * 15.15160 * 25 23 22 27 27 Si 1.86803 * 119.99564 * 195.15573 * 25 23 22 28 28 H 1.48502 * 109.47075 * 359.97438 * 27 25 23 29 29 H 1.48497 * 109.47219 * 120.00100 * 27 25 23 30 30 H 1.48505 * 109.46769 * 239.99874 * 27 25 23 31 31 H 1.08998 * 109.46947 * 299.71198 * 1 2 3 32 32 H 1.08995 * 109.46887 * 59.71358 * 1 2 3 33 33 H 1.08999 * 109.46740 * 179.71300 * 1 2 3 34 34 H 1.08994 * 109.50117 * 305.52509 * 4 2 1 35 35 H 1.09004 * 109.49646 * 65.62791 * 4 2 1 36 36 H 1.08996 * 109.46334 * 301.33953 * 5 4 2 37 37 H 1.09004 * 109.45497 * 181.38575 * 5 4 2 38 38 H 0.97006 * 120.00108 * 24.83811 * 8 6 5 39 39 H 1.08002 * 120.21078 * 359.95838 * 12 11 9 40 40 H 1.08001 * 119.05366 * 180.02562 * 13 12 11 41 41 H 1.07998 * 120.12967 * 0.29059 * 16 15 14 42 42 H 1.07997 * 119.47223 * 179.97438 * 17 16 15 43 43 H 1.08001 * 119.57388 * 180.02562 * 18 17 16 44 44 H 1.07999 * 120.17202 * 180.02562 * 19 18 17 45 45 H 1.08999 * 109.58962 * 174.41999 * 21 6 5 46 46 H 1.08996 * 109.58612 * 294.84568 * 21 6 5 47 47 H 0.96995 * 119.99992 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8955 1.0270 0.0000 4 6 2.0436 -0.7308 -1.2446 5 6 3.5676 -0.8493 -1.1691 6 6 3.9570 -1.6655 0.0655 7 1 3.4988 -2.6530 0.0088 8 7 5.4143 -1.8050 0.1197 9 6 5.9679 -2.8453 0.7739 10 8 5.2580 -3.6679 1.3185 11 6 7.4391 -2.9864 0.8281 12 6 8.2691 -2.1290 0.1173 13 6 9.6503 -2.2907 0.1920 14 7 10.1985 -3.2334 0.9177 15 6 9.4634 -4.0928 1.6277 16 6 10.0712 -5.0985 2.4017 17 6 9.2979 -5.9613 3.1152 18 6 7.9077 -5.8664 3.0938 19 6 7.2844 -4.9056 2.3559 20 6 8.0496 -4.0003 1.6090 21 6 3.4651 -0.9453 1.3248 22 7 2.0226 -0.6981 1.1953 23 6 1.1538 -1.1101 2.1703 24 1 0.1395 -1.3765 1.9123 25 6 1.5768 -1.1852 3.4903 26 7 2.6918 -0.5908 3.8589 27 14 0.5636 -2.1300 4.7434 28 1 -0.6362 -2.7012 4.0805 29 1 1.3832 -3.2280 5.3161 30 1 0.1382 -1.2114 5.8299 31 1 -0.3633 0.5093 0.8925 32 1 -0.3633 0.5183 -0.8874 33 1 -0.3633 -1.0277 -0.0051 34 1 1.6031 -1.7268 -1.2893 35 1 1.7661 -0.1693 -2.1366 36 1 4.0062 0.1461 -1.0995 37 1 3.9379 -1.3472 -2.0653 38 1 5.9809 -1.1487 -0.3153 39 1 7.8459 -1.3422 -0.4895 40 1 10.2878 -1.6190 -0.3638 41 1 11.1475 -5.1827 2.4328 42 1 9.7690 -6.7318 3.7074 43 1 7.3170 -6.5636 3.6696 44 1 6.2064 -4.8417 2.3475 45 1 3.6519 -1.5690 2.1990 46 1 3.9904 0.0038 1.4316 47 1 2.9875 -0.6436 4.7812 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001071663846.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:14:42 Heat of formation + Delta-G solvation = 46.275589 kcal Electronic energy + Delta-G solvation = -29497.360620 eV Core-core repulsion = 25645.599508 eV Total energy + Delta-G solvation = -3851.761111 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -41.11708 -39.35591 -37.66162 -37.15441 -34.60177 -33.49303 -32.85443 -31.03634 -30.58165 -29.98174 -29.65764 -26.29924 -25.30082 -24.56667 -23.63051 -22.75416 -22.28992 -20.82960 -20.35659 -19.33664 -18.18121 -17.56414 -17.35443 -16.44577 -15.68698 -15.58720 -15.16025 -14.88206 -14.75476 -14.43964 -14.06769 -13.95492 -13.82734 -13.78173 -13.41773 -13.22804 -13.18560 -12.77060 -12.43806 -11.92191 -11.86122 -11.65613 -11.51123 -11.42407 -11.15936 -10.92814 -10.74660 -10.63096 -10.49296 -10.42937 -10.28862 -10.19996 -9.97934 -9.70391 -9.51024 -9.15906 -8.89301 -8.70364 -8.45344 -8.28990 -6.63903 -5.76791 -3.21804 0.05023 0.70095 1.70966 2.75627 3.18120 3.31292 3.40549 3.48215 3.49404 4.08478 4.12974 4.48213 4.51355 4.57663 4.65924 4.78014 5.00347 5.13668 5.25295 5.28541 5.32508 5.41767 5.44850 5.52105 5.55805 5.61732 5.69941 5.91483 5.93852 6.03541 6.06101 6.22842 6.24565 6.24966 6.35161 6.39145 6.42834 6.47349 6.53318 6.58715 6.67965 6.77687 6.89757 7.01444 7.09658 7.25854 7.68323 7.71480 7.73810 7.84990 8.40958 8.48238 9.21849 9.85929 10.41227 11.31411 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.012337 B = 0.003555 C = 0.002936 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2269.045092 B = 7873.559231 C = 9535.082747 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.164 3.836 3 H 0.025 0.975 4 C -0.126 4.126 5 C -0.117 4.117 6 C 0.115 3.885 7 H 0.085 0.915 8 N -0.707 5.707 9 C 0.554 3.446 10 O -0.516 6.516 11 C -0.058 4.058 12 C -0.146 4.146 13 C 0.125 3.875 14 N -0.464 5.464 15 C 0.124 3.876 16 C -0.104 4.104 17 C -0.096 4.096 18 C -0.123 4.123 19 C -0.094 4.094 20 C -0.067 4.067 21 C 0.168 3.832 22 N -0.583 5.583 23 C -0.253 4.253 24 H 0.071 0.929 25 C 0.007 3.993 26 N -0.900 5.900 27 Si 0.899 3.101 28 H -0.277 1.277 29 H -0.288 1.288 30 H -0.291 1.291 31 H 0.061 0.939 32 H 0.038 0.962 33 H 0.053 0.947 34 H 0.061 0.939 35 H 0.056 0.944 36 H 0.059 0.941 37 H 0.051 0.949 38 H 0.393 0.607 39 H 0.142 0.858 40 H 0.164 0.836 41 H 0.134 0.866 42 H 0.128 0.872 43 H 0.129 0.871 44 H 0.172 0.828 45 H 0.094 0.906 46 H 0.018 0.982 47 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.459 -3.947 -9.314 16.048 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.058 3.942 3 H 0.043 0.957 4 C -0.166 4.166 5 C -0.155 4.155 6 C 0.010 3.990 7 H 0.103 0.897 8 N -0.357 5.357 9 C 0.340 3.660 10 O -0.393 6.393 11 C -0.070 4.070 12 C -0.167 4.167 13 C -0.047 4.047 14 N -0.172 5.172 15 C 0.002 3.998 16 C -0.123 4.123 17 C -0.116 4.116 18 C -0.141 4.141 19 C -0.112 4.112 20 C -0.069 4.069 21 C 0.041 3.959 22 N -0.306 5.306 23 C -0.383 4.383 24 H 0.089 0.911 25 C -0.192 4.192 26 N -0.544 5.544 27 Si 0.729 3.271 28 H -0.202 1.202 29 H -0.215 1.215 30 H -0.218 1.218 31 H 0.080 0.920 32 H 0.057 0.943 33 H 0.072 0.928 34 H 0.080 0.920 35 H 0.074 0.926 36 H 0.078 0.922 37 H 0.070 0.930 38 H 0.227 0.773 39 H 0.159 0.841 40 H 0.181 0.819 41 H 0.152 0.848 42 H 0.146 0.854 43 H 0.147 0.853 44 H 0.189 0.811 45 H 0.112 0.888 46 H 0.036 0.964 47 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 12.854 -4.683 -8.651 16.186 hybrid contribution -0.873 0.104 0.461 0.992 sum 11.981 -4.579 -8.190 15.219 Atomic orbital electron populations 1.21803 0.95948 1.01402 1.00253 1.20501 0.93136 0.93560 0.87020 0.95713 1.22044 0.94133 1.01393 0.98983 1.21686 0.97588 0.99645 0.96556 1.22109 0.76999 1.01234 0.98631 0.89673 1.46018 1.09042 1.26242 1.54413 1.17977 0.86439 0.82158 0.79415 1.90632 1.62519 1.41826 1.44350 1.20543 0.94144 0.95481 0.96820 1.22407 0.95051 0.99392 0.99804 1.22860 0.92357 0.94631 0.94834 1.67780 1.40018 1.03399 1.06048 1.18873 0.88945 0.95362 0.96602 1.20734 1.00333 0.94261 0.96965 1.20994 0.94041 0.98485 0.98042 1.21123 0.94483 0.99048 0.99407 1.22180 1.03618 0.92286 0.93118 1.18701 0.93738 0.96371 0.98129 1.21073 0.83714 0.96903 0.94175 1.44022 1.02559 1.64809 1.19229 1.19179 0.95042 1.38136 0.85936 0.91141 1.25089 0.97743 0.99270 0.97068 1.69999 1.23816 1.43864 1.16715 0.86274 0.79675 0.79636 0.81502 1.20178 1.21489 1.21776 0.91957 0.94331 0.92796 0.92007 0.92579 0.92182 0.92981 0.77272 0.84051 0.81871 0.84771 0.85363 0.85339 0.81098 0.88760 0.96431 0.93746 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.50 7.95 37.16 0.30 -2.21 16 2 C 0.16 3.27 3.50 -67.60 -0.24 3.03 16 3 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 4 C -0.13 -2.05 5.37 -26.61 -0.14 -2.19 16 5 C -0.12 -1.77 5.35 -26.69 -0.14 -1.92 16 6 C 0.12 2.13 2.60 -67.82 -0.18 1.95 16 7 H 0.09 1.79 7.58 -51.93 -0.39 1.40 16 8 N -0.71 -10.98 5.04 -54.62 -0.28 -11.26 16 9 C 0.55 9.58 7.72 -12.30 -0.09 9.48 16 10 O -0.52 -10.80 13.19 5.33 0.07 -10.73 16 11 C -0.06 -0.87 5.94 -104.34 -0.62 -1.48 16 12 C -0.15 -1.62 9.60 -38.96 -0.37 -1.99 16 13 C 0.13 1.33 11.14 -17.52 -0.20 1.14 16 14 N -0.46 -6.14 10.30 -11.01 -0.11 -6.25 16 15 C 0.12 1.76 6.61 -84.87 -0.56 1.20 16 16 C -0.10 -1.25 9.99 -39.43 -0.39 -1.65 16 17 C -0.10 -1.05 9.94 -39.95 -0.40 -1.45 16 18 C -0.12 -1.55 9.96 -39.88 -0.40 -1.95 16 19 C -0.09 -1.47 9.25 -39.60 -0.37 -1.83 16 20 C -0.07 -1.03 5.76 -106.52 -0.61 -1.65 16 21 C 0.17 3.95 4.86 -3.71 -0.02 3.93 16 22 N -0.58 -14.16 2.99 -164.78 -0.49 -14.65 16 23 C -0.25 -6.82 8.57 -15.06 -0.13 -6.95 16 24 H 0.07 1.85 6.24 -52.49 -0.33 1.53 16 25 C 0.01 0.20 4.95 -17.43 -0.09 0.12 16 26 N -0.90 -26.36 11.20 55.49 0.62 -25.74 16 27 Si 0.90 22.11 29.58 -169.99 -5.03 17.08 16 28 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 29 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 30 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 31 H 0.06 1.24 7.62 -51.93 -0.40 0.84 16 32 H 0.04 0.58 8.14 -51.93 -0.42 0.15 16 33 H 0.05 1.01 7.44 -51.93 -0.39 0.62 16 34 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 35 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 36 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 37 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 38 H 0.39 4.66 6.77 -40.82 -0.28 4.38 16 39 H 0.14 1.09 6.55 -52.49 -0.34 0.75 16 40 H 0.16 1.10 8.06 -52.49 -0.42 0.68 16 41 H 0.13 1.33 8.06 -52.49 -0.42 0.91 16 42 H 0.13 0.99 8.06 -52.49 -0.42 0.57 16 43 H 0.13 1.35 8.06 -52.49 -0.42 0.93 16 44 H 0.17 3.04 4.98 -52.49 -0.26 2.78 16 45 H 0.09 2.63 6.13 -51.93 -0.32 2.31 16 46 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 47 H 0.25 7.23 8.31 -40.82 -0.34 6.89 16 LS Contribution 373.51 15.07 5.63 5.63 Total: -1.00 -32.86 373.51 -10.73 -43.59 By element: Atomic # 1 Polarization: 13.21 SS G_CDS: -6.49 Total: 6.72 kcal Atomic # 6 Polarization: 0.25 SS G_CDS: -4.65 Total: -4.40 kcal Atomic # 7 Polarization: -57.63 SS G_CDS: -0.26 Total: -57.89 kcal Atomic # 8 Polarization: -10.80 SS G_CDS: 0.07 Total: -10.73 kcal Atomic # 14 Polarization: 22.11 SS G_CDS: -5.03 Total: 17.08 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -32.86 -10.73 -43.59 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071663846.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.864 kcal (2) G-P(sol) polarization free energy of solvation -32.863 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.002 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.726 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.589 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.276 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds