Wall clock time and date at job start Tue Mar 31 2020 22:14:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.09003 * 109.58538 * 2 1 4 4 C 1.53191 * 109.58563 * 239.57695 * 2 1 3 5 5 C 1.53046 * 109.30885 * 185.57559 * 4 2 1 6 6 C 1.53040 * 109.53868 * 61.36546 * 5 4 2 7 7 H 1.09004 * 109.52397 * 58.59765 * 6 5 4 8 8 N 1.46493 * 109.49820 * 178.68051 * 6 5 4 9 9 C 1.34778 * 120.00173 * 204.83855 * 8 6 5 10 10 O 1.21540 * 120.00053 * 0.02562 * 9 8 6 11 11 C 1.47902 * 120.00023 * 179.97438 * 9 8 6 12 12 C 1.38890 * 121.11429 * 354.32581 * 11 9 8 13 13 C 1.39271 * 119.57692 * 179.97438 * 12 11 9 14 14 N 1.30995 * 121.88732 * 359.97438 * 13 12 11 15 15 C 1.33532 * 121.82531 * 359.97438 * 14 13 12 16 16 C 1.40718 * 120.97367 * 180.02562 * 15 14 13 17 17 C 1.36063 * 119.74333 * 180.02562 * 16 15 14 18 18 C 1.39357 * 121.05071 * 359.97438 * 17 16 15 19 19 C 1.36246 * 120.83982 * 0.02862 * 18 17 16 20 20 C 1.40101 * 119.64330 * 359.97438 * 19 18 17 21 21 C 1.53186 * 109.31206 * 298.63456 * 6 5 4 22 22 N 1.46923 * 109.58705 * 120.28676 * 2 1 3 23 23 C 1.36937 * 120.62950 * 353.37440 * 22 2 1 24 24 H 1.07995 * 120.00054 * 29.78676 * 23 22 2 25 25 C 1.38821 * 119.99674 * 209.78905 * 23 22 2 26 26 N 1.31613 * 120.00288 * 15.15160 * 25 23 22 27 27 Si 1.86803 * 119.99564 * 195.15573 * 25 23 22 28 28 H 1.48502 * 109.47075 * 359.97438 * 27 25 23 29 29 H 1.48497 * 109.47219 * 120.00100 * 27 25 23 30 30 H 1.48505 * 109.46769 * 239.99874 * 27 25 23 31 31 H 1.08998 * 109.46947 * 299.71198 * 1 2 3 32 32 H 1.08995 * 109.46887 * 59.71358 * 1 2 3 33 33 H 1.08999 * 109.46740 * 179.71300 * 1 2 3 34 34 H 1.08994 * 109.50117 * 305.52509 * 4 2 1 35 35 H 1.09004 * 109.49646 * 65.62791 * 4 2 1 36 36 H 1.08996 * 109.46334 * 301.33953 * 5 4 2 37 37 H 1.09004 * 109.45497 * 181.38575 * 5 4 2 38 38 H 0.97006 * 120.00108 * 24.83811 * 8 6 5 39 39 H 1.08002 * 120.21078 * 359.95838 * 12 11 9 40 40 H 1.08001 * 119.05366 * 180.02562 * 13 12 11 41 41 H 1.07998 * 120.12967 * 0.29059 * 16 15 14 42 42 H 1.07997 * 119.47223 * 179.97438 * 17 16 15 43 43 H 1.08001 * 119.57388 * 180.02562 * 18 17 16 44 44 H 1.07999 * 120.17202 * 180.02562 * 19 18 17 45 45 H 1.08999 * 109.58962 * 174.41999 * 21 6 5 46 46 H 1.08996 * 109.58612 * 294.84568 * 21 6 5 47 47 H 0.96995 * 119.99992 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8955 1.0270 0.0000 4 6 2.0436 -0.7308 -1.2446 5 6 3.5676 -0.8493 -1.1691 6 6 3.9570 -1.6655 0.0655 7 1 3.4988 -2.6530 0.0088 8 7 5.4143 -1.8050 0.1197 9 6 5.9679 -2.8453 0.7739 10 8 5.2580 -3.6679 1.3185 11 6 7.4391 -2.9864 0.8281 12 6 8.2691 -2.1290 0.1173 13 6 9.6503 -2.2907 0.1920 14 7 10.1985 -3.2334 0.9177 15 6 9.4634 -4.0928 1.6277 16 6 10.0712 -5.0985 2.4017 17 6 9.2979 -5.9613 3.1152 18 6 7.9077 -5.8664 3.0938 19 6 7.2844 -4.9056 2.3559 20 6 8.0496 -4.0003 1.6090 21 6 3.4651 -0.9453 1.3248 22 7 2.0226 -0.6981 1.1953 23 6 1.1538 -1.1101 2.1703 24 1 0.1395 -1.3765 1.9123 25 6 1.5768 -1.1852 3.4903 26 7 2.6918 -0.5908 3.8589 27 14 0.5636 -2.1300 4.7434 28 1 -0.6362 -2.7012 4.0805 29 1 1.3832 -3.2280 5.3161 30 1 0.1382 -1.2114 5.8299 31 1 -0.3633 0.5093 0.8925 32 1 -0.3633 0.5183 -0.8874 33 1 -0.3633 -1.0277 -0.0051 34 1 1.6031 -1.7268 -1.2893 35 1 1.7661 -0.1693 -2.1366 36 1 4.0062 0.1461 -1.0995 37 1 3.9379 -1.3472 -2.0653 38 1 5.9809 -1.1487 -0.3153 39 1 7.8459 -1.3422 -0.4895 40 1 10.2878 -1.6190 -0.3638 41 1 11.1475 -5.1827 2.4328 42 1 9.7690 -6.7318 3.7074 43 1 7.3170 -6.5636 3.6696 44 1 6.2064 -4.8417 2.3475 45 1 3.6519 -1.5690 2.1990 46 1 3.9904 0.0038 1.4316 47 1 2.9875 -0.6436 4.7812 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001071663846.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:14:41 Heat of formation + Delta-G solvation = 25.089714 kcal Electronic energy + Delta-G solvation = -29498.279308 eV Core-core repulsion = 25645.599508 eV Total energy + Delta-G solvation = -3852.679800 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -42.17530 -40.69564 -39.22123 -38.11069 -36.13827 -34.74672 -34.50103 -32.39460 -31.77046 -31.54896 -30.81404 -27.86029 -27.00972 -25.80880 -24.58352 -24.11530 -23.73075 -22.22444 -21.77835 -20.93309 -19.20871 -18.64725 -18.46809 -18.25925 -17.29362 -16.88107 -16.49699 -16.22482 -15.89867 -15.69990 -15.60188 -15.31168 -15.19695 -14.96626 -14.85777 -14.58074 -14.28584 -14.20043 -14.03668 -13.49338 -13.10494 -12.82024 -12.79966 -12.73721 -12.64297 -12.57828 -12.35818 -12.28221 -12.13751 -11.99092 -11.67605 -11.56795 -11.46816 -11.28087 -11.14355 -10.56969 -10.35308 -10.19823 -9.83153 -9.32174 -8.63457 -7.87518 -5.33749 -0.97074 -0.24492 0.64934 1.38478 1.42581 1.50683 1.71870 1.93596 2.11554 2.48383 3.07274 3.25957 3.29247 3.41925 3.60905 3.66442 3.72355 3.83769 3.94676 4.08813 4.14130 4.20523 4.23799 4.37654 4.38478 4.51976 4.55022 4.62185 4.70684 4.75466 4.79371 4.88398 5.00641 5.02065 5.06694 5.07803 5.19027 5.27936 5.30970 5.31990 5.39348 5.49087 5.54518 5.55202 5.60818 5.69443 5.77685 5.85695 6.38265 6.47859 6.77891 7.12185 7.17391 7.88563 8.37427 9.17601 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.012337 B = 0.003555 C = 0.002936 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2269.045092 B = 7873.559231 C = 9535.082747 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.153 3.847 3 H 0.023 0.977 4 C -0.118 4.118 5 C -0.107 4.107 6 C 0.131 3.869 7 H 0.054 0.946 8 N -0.694 5.694 9 C 0.550 3.450 10 O -0.565 6.565 11 C -0.093 4.093 12 C -0.119 4.119 13 C 0.129 3.871 14 N -0.472 5.472 15 C 0.103 3.897 16 C -0.103 4.103 17 C -0.093 4.093 18 C -0.117 4.117 19 C -0.135 4.135 20 C -0.088 4.088 21 C 0.180 3.820 22 N -0.603 5.603 23 C -0.249 4.249 24 H 0.075 0.925 25 C -0.052 4.052 26 N -0.934 5.934 27 Si 0.953 3.047 28 H -0.262 1.262 29 H -0.301 1.301 30 H -0.289 1.289 31 H 0.037 0.963 32 H 0.079 0.921 33 H 0.045 0.955 34 H 0.052 0.948 35 H 0.097 0.903 36 H 0.077 0.923 37 H 0.088 0.912 38 H 0.414 0.586 39 H 0.180 0.820 40 H 0.212 0.788 41 H 0.159 0.841 42 H 0.167 0.833 43 H 0.144 0.856 44 H 0.138 0.862 45 H 0.040 0.960 46 H -0.001 1.001 47 H 0.243 0.757 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.250 -3.261 -12.195 19.037 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.048 3.952 3 H 0.041 0.959 4 C -0.157 4.157 5 C -0.145 4.145 6 C 0.025 3.975 7 H 0.073 0.927 8 N -0.345 5.345 9 C 0.337 3.663 10 O -0.445 6.445 11 C -0.104 4.104 12 C -0.139 4.139 13 C -0.044 4.044 14 N -0.181 5.181 15 C -0.018 4.018 16 C -0.121 4.121 17 C -0.112 4.112 18 C -0.135 4.135 19 C -0.153 4.153 20 C -0.090 4.090 21 C 0.053 3.947 22 N -0.327 5.327 23 C -0.379 4.379 24 H 0.092 0.908 25 C -0.247 4.247 26 N -0.580 5.580 27 Si 0.782 3.218 28 H -0.186 1.186 29 H -0.229 1.229 30 H -0.216 1.216 31 H 0.056 0.944 32 H 0.098 0.902 33 H 0.064 0.936 34 H 0.071 0.929 35 H 0.116 0.884 36 H 0.095 0.905 37 H 0.107 0.893 38 H 0.252 0.748 39 H 0.197 0.803 40 H 0.229 0.771 41 H 0.177 0.823 42 H 0.185 0.815 43 H 0.162 0.838 44 H 0.155 0.845 45 H 0.059 0.941 46 H 0.017 0.983 47 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges 14.645 -3.977 -11.585 19.092 hybrid contribution -1.382 -0.063 1.299 1.898 sum 13.263 -4.040 -10.286 17.263 Atomic orbital electron populations 1.21741 0.94846 1.01110 1.01057 1.20826 0.94260 0.93449 0.86706 0.95916 1.21951 0.94569 1.00884 0.98312 1.21664 0.97123 1.00103 0.95645 1.21610 0.78426 0.99467 0.97987 0.92731 1.45769 1.08100 1.26457 1.54205 1.18506 0.87719 0.81668 0.78367 1.90628 1.64028 1.43646 1.46186 1.20415 0.92663 0.97730 0.99640 1.22871 0.95103 0.98263 0.97694 1.23670 0.92616 0.94187 0.93887 1.67864 1.40067 1.03843 1.06331 1.19165 0.88341 0.96595 0.97714 1.21124 1.01633 0.93402 0.95968 1.21340 0.92899 0.99070 0.97926 1.21400 0.95891 0.98019 0.98147 1.21996 1.02321 0.94885 0.96109 1.18888 0.94708 0.96762 0.98663 1.20749 0.83848 0.95281 0.94834 1.44322 1.02492 1.65738 1.20165 1.19506 0.95472 1.36380 0.86555 0.90769 1.25778 0.99010 1.00915 0.98987 1.70155 1.25601 1.45999 1.16282 0.85402 0.78685 0.78094 0.79587 1.18576 1.22857 1.21570 0.94397 0.90231 0.93611 0.92942 0.88434 0.90483 0.89320 0.74775 0.80254 0.77132 0.82340 0.81511 0.83847 0.84494 0.94101 0.98308 0.94743 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.59 7.95 71.98 0.57 -4.02 16 2 C 0.15 5.91 3.50 44.98 0.16 6.06 16 3 H 0.02 0.91 8.14 -2.39 -0.02 0.89 16 4 C -0.12 -3.49 5.37 30.67 0.16 -3.32 16 5 C -0.11 -2.96 5.35 30.62 0.16 -2.79 16 6 C 0.13 4.91 2.60 45.07 0.12 5.03 16 7 H 0.05 2.40 7.58 -2.38 -0.02 2.38 16 8 N -0.69 -21.59 5.04 -445.01 -2.24 -23.83 16 9 C 0.55 20.07 7.72 86.80 0.67 20.74 16 10 O -0.56 -26.07 13.19 -3.84 -0.05 -26.12 16 11 C -0.09 -2.82 5.94 -19.68 -0.12 -2.93 16 12 C -0.12 -2.36 9.60 22.67 0.22 -2.14 16 13 C 0.13 2.31 11.14 85.07 0.95 3.26 16 14 N -0.47 -11.46 10.30 -188.73 -1.94 -13.41 16 15 C 0.10 2.85 6.61 40.35 0.27 3.12 16 16 C -0.10 -2.32 9.99 22.37 0.22 -2.10 16 17 C -0.09 -1.92 9.94 22.03 0.22 -1.70 16 18 C -0.12 -3.07 9.96 22.07 0.22 -2.85 16 19 C -0.13 -4.59 9.25 22.26 0.21 -4.39 16 20 C -0.09 -2.82 5.76 -21.10 -0.12 -2.95 16 21 C 0.18 8.87 4.86 86.36 0.42 9.29 16 22 N -0.60 -30.12 2.99 -675.23 -2.02 -32.14 16 23 C -0.25 -13.86 8.57 84.04 0.72 -13.14 16 24 H 0.07 4.00 6.24 -2.91 -0.02 3.98 16 25 C -0.05 -3.03 4.95 84.87 0.42 -2.61 16 26 N -0.93 -58.08 11.20 21.65 0.24 -57.84 16 27 Si 0.95 47.57 29.58 68.60 2.03 49.60 16 28 H -0.26 -12.24 7.11 99.48 0.71 -11.53 16 29 H -0.30 -15.49 7.11 99.48 0.71 -14.79 16 30 H -0.29 -14.18 7.11 99.48 0.71 -13.47 16 31 H 0.04 1.49 7.62 -2.39 -0.02 1.47 16 32 H 0.08 2.14 8.14 -2.39 -0.02 2.12 16 33 H 0.04 1.66 7.44 -2.39 -0.02 1.65 16 34 H 0.05 1.67 8.14 -2.39 -0.02 1.65 16 35 H 0.10 2.16 8.14 -2.39 -0.02 2.14 16 36 H 0.08 1.92 8.14 -2.39 -0.02 1.90 16 37 H 0.09 1.89 8.14 -2.38 -0.02 1.88 16 38 H 0.41 8.96 6.77 -92.70 -0.63 8.33 16 39 H 0.18 2.01 6.55 -2.91 -0.02 1.99 16 40 H 0.21 1.69 8.06 -2.91 -0.02 1.67 16 41 H 0.16 2.72 8.06 -2.91 -0.02 2.69 16 42 H 0.17 2.09 8.06 -2.91 -0.02 2.07 16 43 H 0.14 3.14 8.06 -2.91 -0.02 3.12 16 44 H 0.14 5.60 4.98 -2.91 -0.01 5.58 16 45 H 0.04 2.45 6.13 -2.39 -0.01 2.43 16 46 H 0.00 -0.06 8.14 -2.39 -0.02 -0.08 16 47 H 0.24 14.90 8.31 -92.71 -0.77 14.13 16 Total: -1.00 -80.83 373.51 1.86 -78.98 By element: Atomic # 1 Polarization: 21.82 SS G_CDS: 0.37 Total: 22.19 kcal Atomic # 6 Polarization: -2.89 SS G_CDS: 5.47 Total: 2.57 kcal Atomic # 7 Polarization: -121.26 SS G_CDS: -5.96 Total: -127.22 kcal Atomic # 8 Polarization: -26.07 SS G_CDS: -0.05 Total: -26.12 kcal Atomic # 14 Polarization: 47.57 SS G_CDS: 2.03 Total: 49.60 kcal Total: -80.83 1.86 -78.98 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071663846.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.067 kcal (2) G-P(sol) polarization free energy of solvation -80.835 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.232 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.857 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.977 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.090 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds