Wall clock time and date at job start Tue Mar 31 2020 22:13:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52990 * 1 3 3 H 1.09004 * 109.58763 * 2 1 4 4 C 1.53195 * 109.58875 * 120.28011 * 2 1 3 5 5 C 1.53035 * 109.31486 * 174.42409 * 4 2 1 6 6 C 1.53043 * 109.53588 * 298.63457 * 5 4 2 7 7 H 1.09011 * 109.49588 * 181.34968 * 6 5 4 8 8 N 1.46498 * 109.50058 * 301.41448 * 6 5 4 9 9 C 1.34779 * 119.99946 * 205.00358 * 8 6 5 10 10 O 1.21584 * 120.00324 * 359.97438 * 9 8 6 11 11 C 1.47555 * 119.99618 * 179.97438 * 9 8 6 12 12 C 1.38691 * 120.38927 * 353.97719 * 11 9 8 13 13 C 1.38973 * 120.53820 * 180.02562 * 12 11 9 14 14 C 1.36208 * 121.23852 * 0.02562 * 13 12 11 15 15 C 1.40714 * 120.19876 * 0.23073 * 14 13 12 16 16 N 1.33690 * 120.94071 * 180.34123 * 15 14 13 17 17 C 1.31059 * 121.34690 * 179.78583 * 16 15 14 18 18 C 1.39345 * 121.70483 * 359.66226 * 17 16 15 19 19 C 1.36679 * 119.86826 * 0.02562 * 18 17 16 20 20 C 1.40469 * 118.17120 * 0.02562 * 19 18 17 21 21 C 1.53189 * 109.31198 * 61.36936 * 6 5 4 22 22 N 1.46927 * 109.58847 * 239.57062 * 2 1 3 23 23 C 1.36933 * 120.62962 * 6.62646 * 22 2 1 24 24 H 1.08002 * 120.00136 * 332.77984 * 23 22 2 25 25 C 1.38816 * 119.99945 * 152.77859 * 23 22 2 26 26 N 1.31616 * 120.00141 * 341.47940 * 25 23 22 27 27 Si 1.86801 * 119.99764 * 161.47500 * 25 23 22 28 28 H 1.48508 * 109.46972 * 85.13523 * 27 25 23 29 29 H 1.48505 * 109.47073 * 205.13033 * 27 25 23 30 30 H 1.48492 * 109.47304 * 325.13301 * 27 25 23 31 31 H 1.08998 * 109.47741 * 299.71609 * 1 2 3 32 32 H 1.08998 * 109.47505 * 59.72002 * 1 2 3 33 33 H 1.09002 * 109.47323 * 179.72023 * 1 2 3 34 34 H 1.09005 * 109.49406 * 54.47442 * 4 2 1 35 35 H 1.08992 * 109.49754 * 294.37742 * 4 2 1 36 36 H 1.09001 * 109.46345 * 178.61961 * 5 4 2 37 37 H 1.09002 * 109.45034 * 58.64685 * 5 4 2 38 38 H 0.96998 * 120.00050 * 24.99575 * 8 6 5 39 39 H 1.07995 * 119.73211 * 0.02562 * 12 11 9 40 40 H 1.08001 * 119.38085 * 179.97438 * 13 12 11 41 41 H 1.07990 * 119.90308 * 179.97438 * 14 13 12 42 42 H 1.07997 * 119.14820 * 179.68479 * 17 16 15 43 43 H 1.07997 * 120.06694 * 180.02562 * 18 17 16 44 44 H 1.08000 * 120.91357 * 179.97438 * 19 18 17 45 45 H 1.08997 * 109.59317 * 65.15266 * 21 6 5 46 46 H 1.09003 * 109.58501 * 185.57616 * 21 6 5 47 47 H 0.96993 * 120.00174 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8953 1.0270 0.0000 4 6 2.0435 -0.7277 1.2464 5 6 3.5674 -0.8464 1.1713 6 6 3.9568 -1.6658 -0.0613 7 1 5.0412 -1.7702 -0.1010 8 7 3.3405 -2.9924 0.0187 9 6 3.8971 -4.0343 -0.6303 10 8 4.9105 -3.8731 -1.2825 11 6 3.2766 -5.3705 -0.5493 12 6 2.1947 -5.5920 0.2898 13 6 1.6082 -6.8494 0.3689 14 6 2.0752 -7.8944 -0.3694 15 6 3.1742 -7.7176 -1.2303 16 7 3.6405 -8.7312 -1.9667 17 6 4.6609 -8.5744 -2.7742 18 6 5.3047 -7.3462 -2.9107 19 6 4.8731 -6.2677 -2.1905 20 6 3.7798 -6.4421 -1.3260 21 6 3.4650 -0.9486 -1.3224 22 7 2.0225 -0.7011 -1.1936 23 6 1.1537 -1.1155 -2.1675 24 1 0.1281 -1.3415 -1.9157 25 6 1.5913 -1.2450 -3.4785 26 7 2.6954 -0.6427 -3.8664 27 14 0.6130 -2.2742 -4.6922 28 1 -0.4660 -1.4453 -5.2874 29 1 1.5139 -2.7605 -5.7679 30 1 0.0132 -3.4349 -3.9865 31 1 -0.3634 0.5094 0.8925 32 1 -0.3634 0.5182 -0.8874 33 1 -0.3634 -1.0277 -0.0050 34 1 1.6029 -1.7237 1.2935 35 1 1.7660 -0.1641 2.1370 36 1 3.9378 -1.3421 2.0686 37 1 4.0059 0.1489 1.0990 38 1 2.5319 -3.1209 0.5387 39 1 1.8048 -4.7807 0.8865 40 1 0.7668 -7.0011 1.0288 41 1 1.6034 -8.8626 -0.2908 42 1 5.0116 -9.4189 -3.3488 43 1 6.1429 -7.2466 -3.5843 44 1 5.3599 -5.3080 -2.2829 45 1 3.9903 0.0002 -1.4317 46 1 3.6518 -1.5746 -2.1951 47 1 3.0013 -0.7336 -4.7823 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001071722525.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:13:38 Heat of formation + Delta-G solvation = 49.184803 kcal Electronic energy + Delta-G solvation = -30410.992145 eV Core-core repulsion = 26559.357186 eV Total energy + Delta-G solvation = -3851.634958 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -40.95602 -39.41346 -37.70615 -36.81307 -34.29780 -33.19298 -32.80679 -31.27012 -30.51245 -29.98908 -29.49255 -26.28824 -25.08521 -24.53825 -23.45057 -23.13088 -22.22097 -20.71123 -20.43722 -18.90341 -18.22114 -17.49371 -16.75069 -16.36262 -16.08867 -15.37791 -15.14768 -14.79354 -14.66577 -14.26985 -14.09532 -13.86472 -13.82641 -13.59662 -13.29659 -13.07929 -12.87948 -12.72954 -12.48559 -12.08420 -11.96589 -11.64363 -11.36411 -11.24562 -11.20511 -11.00826 -10.91805 -10.70024 -10.41925 -10.40479 -10.35147 -10.00002 -9.94971 -9.57011 -9.49431 -8.99769 -8.79252 -8.54867 -8.45560 -8.17724 -6.65855 -5.77784 -3.18226 0.21550 0.84076 1.86364 2.74181 3.36816 3.42686 3.45758 3.46271 3.63035 4.21850 4.27303 4.49197 4.70842 4.72211 4.85087 4.97399 5.10078 5.14516 5.26124 5.31244 5.34307 5.37010 5.45466 5.49471 5.55689 5.80284 5.88327 5.95298 5.97382 6.05149 6.10365 6.19104 6.24362 6.27766 6.30345 6.38525 6.40486 6.45152 6.54917 6.58047 6.70422 6.79229 6.87061 7.00738 7.07696 7.33169 7.63889 7.82000 7.90192 7.97525 8.45081 8.65043 9.20758 9.86332 10.41060 11.30453 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.010946 B = 0.004576 C = 0.004034 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2557.386257 B = 6118.030952 C = 6939.518153 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.165 3.835 3 H 0.025 0.975 4 C -0.131 4.131 5 C -0.119 4.119 6 C 0.117 3.883 7 H 0.078 0.922 8 N -0.688 5.688 9 C 0.559 3.441 10 O -0.540 6.540 11 C -0.096 4.096 12 C -0.079 4.079 13 C -0.108 4.108 14 C -0.076 4.076 15 C 0.118 3.882 16 N -0.483 5.483 17 C 0.131 3.869 18 C -0.186 4.186 19 C -0.053 4.053 20 C -0.068 4.068 21 C 0.161 3.839 22 N -0.582 5.582 23 C -0.251 4.251 24 H 0.069 0.931 25 C 0.007 3.993 26 N -0.897 5.897 27 Si 0.890 3.110 28 H -0.287 1.287 29 H -0.290 1.290 30 H -0.281 1.281 31 H 0.037 0.963 32 H 0.060 0.940 33 H 0.052 0.948 34 H 0.053 0.947 35 H 0.054 0.946 36 H 0.052 0.948 37 H 0.072 0.928 38 H 0.395 0.605 39 H 0.131 0.869 40 H 0.135 0.865 41 H 0.136 0.864 42 H 0.157 0.843 43 H 0.137 0.863 44 H 0.181 0.819 45 H 0.026 0.974 46 H 0.097 0.903 47 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.403 -9.808 10.539 14.465 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.058 3.942 3 H 0.043 0.957 4 C -0.170 4.170 5 C -0.157 4.157 6 C 0.012 3.988 7 H 0.096 0.904 8 N -0.338 5.338 9 C 0.346 3.654 10 O -0.421 6.421 11 C -0.100 4.100 12 C -0.098 4.098 13 C -0.128 4.128 14 C -0.095 4.095 15 C -0.003 4.003 16 N -0.191 5.191 17 C -0.042 4.042 18 C -0.206 4.206 19 C -0.078 4.078 20 C -0.070 4.070 21 C 0.034 3.966 22 N -0.306 5.306 23 C -0.381 4.381 24 H 0.086 0.914 25 C -0.192 4.192 26 N -0.541 5.541 27 Si 0.720 3.280 28 H -0.214 1.214 29 H -0.216 1.216 30 H -0.207 1.207 31 H 0.056 0.944 32 H 0.079 0.921 33 H 0.071 0.929 34 H 0.072 0.928 35 H 0.073 0.927 36 H 0.071 0.929 37 H 0.091 0.909 38 H 0.232 0.768 39 H 0.149 0.851 40 H 0.153 0.847 41 H 0.154 0.846 42 H 0.174 0.826 43 H 0.155 0.845 44 H 0.198 0.802 45 H 0.044 0.956 46 H 0.116 0.884 47 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 1.688 -10.418 10.060 14.580 hybrid contribution -0.534 0.228 -0.687 0.900 sum 1.154 -10.190 9.373 13.893 Atomic orbital electron populations 1.21799 0.96107 1.01266 1.00193 1.20454 0.92913 0.93645 0.87152 0.95735 1.22072 0.95122 1.00611 0.99201 1.21700 0.97048 1.00233 0.96735 1.21850 0.97068 0.81463 0.98449 0.90357 1.45788 1.29040 1.08515 1.50430 1.17927 0.84073 0.83832 0.79563 1.90522 1.25610 1.84549 1.41389 1.20041 0.97562 0.93730 0.98693 1.21413 0.93916 0.97523 0.96984 1.20797 1.00106 0.92290 0.99569 1.20917 0.94313 0.99805 0.94436 1.18836 0.96121 0.88817 0.96492 1.68017 1.12532 1.31809 1.06764 1.22955 0.90587 0.96836 0.93806 1.22039 1.02494 0.94073 1.01967 1.22760 0.92871 1.01773 0.90414 1.18662 0.97196 0.93335 0.97845 1.21196 0.83774 0.97159 0.94459 1.44065 1.02699 1.64698 1.19089 1.19053 0.93977 1.38437 0.86589 0.91356 1.24956 0.97820 0.99652 0.96737 1.70003 1.24316 1.42896 1.16870 0.86505 0.79377 0.80721 0.81360 1.21365 1.21605 1.20684 0.94394 0.92058 0.92929 0.92820 0.92740 0.92947 0.90945 0.76848 0.85075 0.84703 0.84585 0.82607 0.84532 0.80205 0.95574 0.88441 0.93665 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.37 7.93 37.15 0.29 -2.08 16 2 C 0.17 3.12 3.50 -67.60 -0.24 2.88 16 3 H 0.03 0.50 8.14 -51.93 -0.42 0.07 16 4 C -0.13 -1.96 5.21 -26.61 -0.14 -2.10 16 5 C -0.12 -1.77 5.59 -26.69 -0.15 -1.92 16 6 C 0.12 2.13 2.81 -67.81 -0.19 1.94 16 7 H 0.08 1.45 7.58 -51.92 -0.39 1.06 16 8 N -0.69 -11.83 4.86 -54.72 -0.27 -12.10 16 9 C 0.56 10.42 7.69 -12.46 -0.10 10.32 16 10 O -0.54 -11.39 13.07 5.29 0.07 -11.32 16 11 C -0.10 -1.60 5.90 -104.65 -0.62 -2.22 16 12 C -0.08 -1.05 9.51 -39.14 -0.37 -1.43 16 13 C -0.11 -1.24 9.92 -40.04 -0.40 -1.64 16 14 C -0.08 -0.98 9.96 -39.38 -0.39 -1.37 16 15 C 0.12 1.85 6.60 -84.87 -0.56 1.29 16 16 N -0.48 -7.27 10.34 -10.99 -0.11 -7.38 16 17 C 0.13 1.68 11.15 -17.47 -0.19 1.49 16 18 C -0.19 -2.50 10.04 -39.73 -0.40 -2.90 16 19 C -0.05 -0.88 9.29 -39.31 -0.37 -1.25 16 20 C -0.07 -1.15 5.76 -106.53 -0.61 -1.76 16 21 C 0.16 3.70 4.92 -3.71 -0.02 3.68 16 22 N -0.58 -13.39 2.91 -164.78 -0.48 -13.87 16 23 C -0.25 -6.49 8.64 -15.06 -0.13 -6.62 16 24 H 0.07 1.73 6.16 -52.49 -0.32 1.41 16 25 C 0.01 0.20 4.88 -17.43 -0.09 0.12 16 26 N -0.90 -26.00 11.23 55.49 0.62 -25.38 16 27 Si 0.89 22.10 29.59 -169.99 -5.03 17.07 16 28 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 29 H -0.29 -7.39 7.11 56.52 0.40 -6.99 16 30 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 31 H 0.04 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.06 1.18 7.64 -51.93 -0.40 0.79 16 33 H 0.05 0.92 7.42 -51.93 -0.39 0.53 16 34 H 0.05 0.78 6.40 -51.93 -0.33 0.45 16 35 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 36 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 37 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 38 H 0.40 6.01 4.84 -40.82 -0.20 5.81 16 39 H 0.13 1.45 6.43 -52.49 -0.34 1.11 16 40 H 0.14 1.09 8.06 -52.49 -0.42 0.66 16 41 H 0.14 1.45 8.06 -52.49 -0.42 1.02 16 42 H 0.16 1.41 8.06 -52.49 -0.42 0.99 16 43 H 0.14 1.43 8.06 -52.49 -0.42 1.01 16 44 H 0.18 3.27 4.96 -52.50 -0.26 3.01 16 45 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 46 H 0.10 2.66 6.04 -51.93 -0.31 2.34 16 47 H 0.25 7.25 8.31 -40.82 -0.34 6.91 16 LS Contribution 369.50 15.07 5.57 5.57 Total: -1.00 -31.86 369.50 -10.59 -42.45 By element: Atomic # 1 Polarization: 14.83 SS G_CDS: -6.30 Total: 8.53 kcal Atomic # 6 Polarization: 1.10 SS G_CDS: -4.66 Total: -3.56 kcal Atomic # 7 Polarization: -58.50 SS G_CDS: -0.24 Total: -58.73 kcal Atomic # 8 Polarization: -11.39 SS G_CDS: 0.07 Total: -11.32 kcal Atomic # 14 Polarization: 22.10 SS G_CDS: -5.03 Total: 17.07 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -31.86 -10.59 -42.45 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071722525.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.635 kcal (2) G-P(sol) polarization free energy of solvation -31.856 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.779 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.595 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.450 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.185 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds