Wall clock time and date at job start Tue Mar 31 2020 22:13:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52990 * 1 3 3 H 1.09004 * 109.58763 * 2 1 4 4 C 1.53195 * 109.58875 * 120.28011 * 2 1 3 5 5 C 1.53035 * 109.31486 * 174.42409 * 4 2 1 6 6 C 1.53043 * 109.53588 * 298.63457 * 5 4 2 7 7 H 1.09011 * 109.49588 * 181.34968 * 6 5 4 8 8 N 1.46498 * 109.50058 * 301.41448 * 6 5 4 9 9 C 1.34779 * 119.99946 * 205.00358 * 8 6 5 10 10 O 1.21584 * 120.00324 * 359.97438 * 9 8 6 11 11 C 1.47555 * 119.99618 * 179.97438 * 9 8 6 12 12 C 1.38691 * 120.38927 * 353.97719 * 11 9 8 13 13 C 1.38973 * 120.53820 * 180.02562 * 12 11 9 14 14 C 1.36208 * 121.23852 * 0.02562 * 13 12 11 15 15 C 1.40714 * 120.19876 * 0.23073 * 14 13 12 16 16 N 1.33690 * 120.94071 * 180.34123 * 15 14 13 17 17 C 1.31059 * 121.34690 * 179.78583 * 16 15 14 18 18 C 1.39345 * 121.70483 * 359.66226 * 17 16 15 19 19 C 1.36679 * 119.86826 * 0.02562 * 18 17 16 20 20 C 1.40469 * 118.17120 * 0.02562 * 19 18 17 21 21 C 1.53189 * 109.31198 * 61.36936 * 6 5 4 22 22 N 1.46927 * 109.58847 * 239.57062 * 2 1 3 23 23 C 1.36933 * 120.62962 * 6.62646 * 22 2 1 24 24 H 1.08002 * 120.00136 * 332.77984 * 23 22 2 25 25 C 1.38816 * 119.99945 * 152.77859 * 23 22 2 26 26 N 1.31616 * 120.00141 * 341.47940 * 25 23 22 27 27 Si 1.86801 * 119.99764 * 161.47500 * 25 23 22 28 28 H 1.48508 * 109.46972 * 85.13523 * 27 25 23 29 29 H 1.48505 * 109.47073 * 205.13033 * 27 25 23 30 30 H 1.48492 * 109.47304 * 325.13301 * 27 25 23 31 31 H 1.08998 * 109.47741 * 299.71609 * 1 2 3 32 32 H 1.08998 * 109.47505 * 59.72002 * 1 2 3 33 33 H 1.09002 * 109.47323 * 179.72023 * 1 2 3 34 34 H 1.09005 * 109.49406 * 54.47442 * 4 2 1 35 35 H 1.08992 * 109.49754 * 294.37742 * 4 2 1 36 36 H 1.09001 * 109.46345 * 178.61961 * 5 4 2 37 37 H 1.09002 * 109.45034 * 58.64685 * 5 4 2 38 38 H 0.96998 * 120.00050 * 24.99575 * 8 6 5 39 39 H 1.07995 * 119.73211 * 0.02562 * 12 11 9 40 40 H 1.08001 * 119.38085 * 179.97438 * 13 12 11 41 41 H 1.07990 * 119.90308 * 179.97438 * 14 13 12 42 42 H 1.07997 * 119.14820 * 179.68479 * 17 16 15 43 43 H 1.07997 * 120.06694 * 180.02562 * 18 17 16 44 44 H 1.08000 * 120.91357 * 179.97438 * 19 18 17 45 45 H 1.08997 * 109.59317 * 65.15266 * 21 6 5 46 46 H 1.09003 * 109.58501 * 185.57616 * 21 6 5 47 47 H 0.96993 * 120.00174 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8953 1.0270 0.0000 4 6 2.0435 -0.7277 1.2464 5 6 3.5674 -0.8464 1.1713 6 6 3.9568 -1.6658 -0.0613 7 1 5.0412 -1.7702 -0.1010 8 7 3.3405 -2.9924 0.0187 9 6 3.8971 -4.0343 -0.6303 10 8 4.9105 -3.8731 -1.2825 11 6 3.2766 -5.3705 -0.5493 12 6 2.1947 -5.5920 0.2898 13 6 1.6082 -6.8494 0.3689 14 6 2.0752 -7.8944 -0.3694 15 6 3.1742 -7.7176 -1.2303 16 7 3.6405 -8.7312 -1.9667 17 6 4.6609 -8.5744 -2.7742 18 6 5.3047 -7.3462 -2.9107 19 6 4.8731 -6.2677 -2.1905 20 6 3.7798 -6.4421 -1.3260 21 6 3.4650 -0.9486 -1.3224 22 7 2.0225 -0.7011 -1.1936 23 6 1.1537 -1.1155 -2.1675 24 1 0.1281 -1.3415 -1.9157 25 6 1.5913 -1.2450 -3.4785 26 7 2.6954 -0.6427 -3.8664 27 14 0.6130 -2.2742 -4.6922 28 1 -0.4660 -1.4453 -5.2874 29 1 1.5139 -2.7605 -5.7679 30 1 0.0132 -3.4349 -3.9865 31 1 -0.3634 0.5094 0.8925 32 1 -0.3634 0.5182 -0.8874 33 1 -0.3634 -1.0277 -0.0050 34 1 1.6029 -1.7237 1.2935 35 1 1.7660 -0.1641 2.1370 36 1 3.9378 -1.3421 2.0686 37 1 4.0059 0.1489 1.0990 38 1 2.5319 -3.1209 0.5387 39 1 1.8048 -4.7807 0.8865 40 1 0.7668 -7.0011 1.0288 41 1 1.6034 -8.8626 -0.2908 42 1 5.0116 -9.4189 -3.3488 43 1 6.1429 -7.2466 -3.5843 44 1 5.3599 -5.3080 -2.2829 45 1 3.9903 0.0002 -1.4317 46 1 3.6518 -1.5746 -2.1951 47 1 3.0013 -0.7336 -4.7823 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001071722525.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:13:37 Heat of formation + Delta-G solvation = 29.505321 kcal Electronic energy + Delta-G solvation = -30411.845511 eV Core-core repulsion = 26559.357186 eV Total energy + Delta-G solvation = -3852.488325 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.27 seconds Orbital eigenvalues (eV) -42.09931 -40.79215 -39.18892 -37.90474 -35.88458 -34.55502 -34.32269 -32.64017 -31.75929 -31.55579 -30.72074 -27.87173 -26.81776 -25.67338 -24.54531 -24.33987 -23.85887 -22.14682 -21.81914 -20.45373 -19.37760 -18.62402 -18.21628 -17.80946 -17.37502 -16.95579 -16.64181 -16.14359 -15.88461 -15.73961 -15.57571 -15.24595 -15.19275 -14.86043 -14.68016 -14.43705 -14.17612 -14.04194 -13.92841 -13.55418 -13.09643 -12.97065 -12.91385 -12.71386 -12.61541 -12.54552 -12.41760 -12.33573 -12.15940 -12.07468 -11.58177 -11.52199 -11.26190 -11.18140 -11.04341 -10.52832 -10.25988 -10.04549 -9.83270 -9.31051 -8.60630 -7.84512 -5.24845 -0.88509 -0.21134 0.68278 1.35433 1.40295 1.44805 1.67603 2.11665 2.32958 2.47756 3.10078 3.29595 3.31591 3.56990 3.63008 3.73955 3.80955 3.87380 4.03308 4.04708 4.10484 4.15149 4.19902 4.40458 4.44629 4.49200 4.64869 4.72823 4.78783 4.79482 4.82298 4.96065 5.02295 5.03807 5.05940 5.13103 5.18814 5.23456 5.28026 5.32575 5.33213 5.55133 5.58126 5.62809 5.69388 5.74031 5.74689 5.79619 6.42032 6.60859 6.81981 7.17452 7.28681 7.93323 8.42503 9.20952 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.010946 B = 0.004576 C = 0.004034 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2557.386257 B = 6118.030952 C = 6939.518153 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.153 3.847 3 H 0.013 0.987 4 C -0.119 4.119 5 C -0.111 4.111 6 C 0.128 3.872 7 H 0.068 0.932 8 N -0.680 5.680 9 C 0.551 3.449 10 O -0.578 6.578 11 C -0.136 4.136 12 C -0.063 4.063 13 C -0.100 4.100 14 C -0.073 4.073 15 C 0.095 3.905 16 N -0.493 5.493 17 C 0.129 3.871 18 C -0.176 4.176 19 C -0.092 4.092 20 C -0.090 4.090 21 C 0.170 3.830 22 N -0.594 5.594 23 C -0.232 4.232 24 H 0.079 0.921 25 C -0.053 4.053 26 N -0.934 5.934 27 Si 0.939 3.061 28 H -0.280 1.280 29 H -0.308 1.308 30 H -0.274 1.274 31 H 0.076 0.924 32 H 0.032 0.968 33 H 0.053 0.947 34 H 0.065 0.935 35 H 0.092 0.908 36 H 0.087 0.913 37 H 0.073 0.927 38 H 0.407 0.593 39 H 0.157 0.843 40 H 0.182 0.818 41 H 0.162 0.838 42 H 0.198 0.802 43 H 0.162 0.838 44 H 0.154 0.846 45 H -0.003 1.003 46 H 0.048 0.952 47 H 0.241 0.759 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.007 -11.733 13.844 18.176 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.048 3.952 3 H 0.031 0.969 4 C -0.158 4.158 5 C -0.149 4.149 6 C 0.022 3.978 7 H 0.086 0.914 8 N -0.330 5.330 9 C 0.340 3.660 10 O -0.461 6.461 11 C -0.140 4.140 12 C -0.082 4.082 13 C -0.119 4.119 14 C -0.092 4.092 15 C -0.025 4.025 16 N -0.201 5.201 17 C -0.043 4.043 18 C -0.195 4.195 19 C -0.117 4.117 20 C -0.092 4.092 21 C 0.043 3.957 22 N -0.317 5.317 23 C -0.362 4.362 24 H 0.096 0.904 25 C -0.247 4.247 26 N -0.582 5.582 27 Si 0.769 3.231 28 H -0.207 1.207 29 H -0.235 1.235 30 H -0.199 1.199 31 H 0.095 0.905 32 H 0.052 0.948 33 H 0.072 0.928 34 H 0.084 0.916 35 H 0.111 0.889 36 H 0.106 0.894 37 H 0.092 0.908 38 H 0.246 0.754 39 H 0.174 0.826 40 H 0.199 0.801 41 H 0.180 0.820 42 H 0.215 0.785 43 H 0.180 0.820 44 H 0.171 0.829 45 H 0.015 0.985 46 H 0.066 0.934 47 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges -0.771 -12.342 13.425 18.252 hybrid contribution 0.212 0.823 -1.681 1.884 sum -0.559 -11.519 11.743 16.459 Atomic orbital electron populations 1.21734 0.94659 1.01470 1.00805 1.20782 0.94211 0.93203 0.87018 0.96896 1.21966 0.94589 1.01180 0.98078 1.21678 0.97427 0.99887 0.95869 1.21541 0.96446 0.82081 0.97779 0.91442 1.45650 1.29369 1.07671 1.50325 1.18446 0.83732 0.85052 0.78789 1.90517 1.27390 1.85354 1.42855 1.19979 0.99916 0.92522 1.01550 1.21817 0.91954 0.99215 0.95165 1.21274 1.00607 0.90746 0.99294 1.21339 0.93103 1.01455 0.93265 1.19238 0.97295 0.88347 0.97656 1.68091 1.13201 1.31649 1.07166 1.23588 0.89747 0.97597 0.93395 1.22359 1.02649 0.93529 1.00992 1.22654 0.94370 1.01838 0.92832 1.18889 0.97634 0.94373 0.98328 1.20870 0.84179 0.95359 0.95296 1.44282 1.02197 1.65374 1.19873 1.19400 0.94447 1.35622 0.86778 0.90384 1.25569 0.98957 1.01626 0.98585 1.70163 1.26319 1.45369 1.16302 0.85703 0.78072 0.79802 0.79504 1.20652 1.23532 1.19887 0.90506 0.94830 0.92779 0.91648 0.88949 0.89430 0.90799 0.75447 0.82555 0.80092 0.82024 0.78540 0.82013 0.82935 0.98502 0.93378 0.94961 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.14 7.93 71.98 0.57 -3.57 16 2 C 0.15 5.50 3.50 44.97 0.16 5.65 16 3 H 0.01 0.51 8.14 -2.38 -0.02 0.49 16 4 C -0.12 -3.09 5.21 30.67 0.16 -2.93 16 5 C -0.11 -3.00 5.59 30.62 0.17 -2.83 16 6 C 0.13 4.68 2.81 45.07 0.13 4.81 16 7 H 0.07 2.62 7.58 -2.38 -0.02 2.60 16 8 N -0.68 -23.17 4.86 -445.30 -2.17 -25.34 16 9 C 0.55 21.36 7.69 86.70 0.67 22.02 16 10 O -0.58 -26.49 13.07 -3.98 -0.05 -26.54 16 11 C -0.14 -4.53 5.90 -19.89 -0.12 -4.65 16 12 C -0.06 -1.51 9.51 22.55 0.21 -1.29 16 13 C -0.10 -1.90 9.92 21.97 0.22 -1.68 16 14 C -0.07 -1.67 9.96 22.40 0.22 -1.44 16 15 C 0.10 2.89 6.60 40.28 0.27 3.16 16 16 N -0.49 -14.16 10.34 -188.67 -1.95 -16.11 16 17 C 0.13 3.16 11.15 85.07 0.95 4.11 16 18 C -0.18 -4.79 10.04 22.17 0.22 -4.57 16 19 C -0.09 -3.24 9.29 22.45 0.21 -3.03 16 20 C -0.09 -3.11 5.76 -21.10 -0.12 -3.23 16 21 C 0.17 8.22 4.92 86.36 0.43 8.64 16 22 N -0.59 -27.56 2.91 -675.23 -1.97 -29.53 16 23 C -0.23 -12.13 8.64 84.03 0.73 -11.40 16 24 H 0.08 3.89 6.16 -2.91 -0.02 3.87 16 25 C -0.05 -2.99 4.88 84.86 0.41 -2.58 16 26 N -0.93 -57.58 11.23 21.65 0.24 -57.34 16 27 Si 0.94 46.91 29.59 68.60 2.03 48.94 16 28 H -0.28 -13.49 7.11 99.48 0.71 -12.79 16 29 H -0.31 -16.14 7.11 99.48 0.71 -15.43 16 30 H -0.27 -13.12 7.11 99.48 0.71 -12.42 16 31 H 0.08 1.87 8.14 -2.39 -0.02 1.85 16 32 H 0.03 1.24 7.64 -2.39 -0.02 1.22 16 33 H 0.05 1.71 7.42 -2.39 -0.02 1.69 16 34 H 0.06 1.58 6.40 -2.38 -0.02 1.56 16 35 H 0.09 1.82 8.14 -2.39 -0.02 1.80 16 36 H 0.09 1.86 8.14 -2.39 -0.02 1.84 16 37 H 0.07 2.01 8.14 -2.39 -0.02 1.99 16 38 H 0.41 11.43 4.84 -92.71 -0.45 10.99 16 39 H 0.16 2.82 6.43 -2.91 -0.02 2.81 16 40 H 0.18 1.78 8.06 -2.91 -0.02 1.76 16 41 H 0.16 2.79 8.06 -2.92 -0.02 2.77 16 42 H 0.20 3.01 8.06 -2.91 -0.02 2.98 16 43 H 0.16 3.37 8.06 -2.91 -0.02 3.35 16 44 H 0.15 6.21 4.96 -3.18 -0.02 6.19 16 45 H 0.00 -0.15 8.14 -2.39 -0.02 -0.17 16 46 H 0.05 2.82 6.04 -2.39 -0.01 2.80 16 47 H 0.24 14.83 8.31 -92.71 -0.77 14.06 16 Total: -1.00 -77.09 369.50 2.17 -74.92 By element: Atomic # 1 Polarization: 25.26 SS G_CDS: 0.55 Total: 25.82 kcal Atomic # 6 Polarization: -0.30 SS G_CDS: 5.48 Total: 5.18 kcal Atomic # 7 Polarization: -122.47 SS G_CDS: -5.84 Total: -128.31 kcal Atomic # 8 Polarization: -26.49 SS G_CDS: -0.05 Total: -26.54 kcal Atomic # 14 Polarization: 46.91 SS G_CDS: 2.03 Total: 48.94 kcal Total: -77.09 2.17 -74.92 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071722525.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.421 kcal (2) G-P(sol) polarization free energy of solvation -77.088 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.333 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.172 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.916 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.505 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.27 seconds