Wall clock time and date at job start Tue Mar 31 2020 22:12:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08993 * 109.59010 * 2 1 4 4 C 1.53199 * 109.58227 * 120.42575 * 2 1 3 5 5 C 1.53045 * 109.30664 * 174.42001 * 4 2 1 6 6 C 1.53033 * 109.54008 * 298.63460 * 5 4 2 7 7 H 1.09004 * 109.49817 * 181.32152 * 6 5 4 8 8 N 1.46507 * 109.49711 * 301.41382 * 6 5 4 9 9 C 1.34774 * 120.00024 * 204.83883 * 8 6 5 10 10 O 1.21568 * 120.00158 * 359.97438 * 9 8 6 11 11 C 1.47762 * 120.00149 * 180.02562 * 9 8 6 12 12 C 1.40634 * 119.80255 * 359.72145 * 11 9 8 13 13 C 1.35700 * 120.91911 * 179.77472 * 12 11 9 14 14 C 1.40761 * 120.11466 * 0.47774 * 13 12 11 15 15 N 1.33648 * 120.83284 * 179.78477 * 14 13 12 16 16 C 1.31120 * 121.39527 * 180.02562 * 15 14 13 17 17 C 1.39310 * 121.76619 * 359.97438 * 16 15 14 18 18 C 1.36572 * 119.90755 * 0.02562 * 17 16 15 19 19 C 1.40889 * 118.16347 * 359.97438 * 18 17 16 20 20 C 1.38554 * 119.80795 * 180.02562 * 11 9 8 21 21 C 1.53192 * 109.31304 * 61.36680 * 6 5 4 22 22 N 1.46919 * 108.77705 * 305.36711 * 21 6 5 23 23 C 1.36937 * 120.62924 * 233.59154 * 22 21 6 24 24 H 1.08000 * 120.00417 * 149.29647 * 23 22 21 25 25 C 1.38822 * 119.99765 * 329.28823 * 23 22 21 26 26 N 1.31620 * 119.99894 * 345.75705 * 25 23 22 27 27 Si 1.86801 * 119.99668 * 165.75645 * 25 23 22 28 28 H 1.48506 * 109.46773 * 90.00394 * 27 25 23 29 29 H 1.48501 * 109.46790 * 210.00013 * 27 25 23 30 30 H 1.48498 * 109.47308 * 330.00413 * 27 25 23 31 31 H 1.08995 * 109.47615 * 180.28480 * 1 2 3 32 32 H 1.09002 * 109.46767 * 300.28859 * 1 2 3 33 33 H 1.09005 * 109.46985 * 60.28273 * 1 2 3 34 34 H 1.08997 * 109.49858 * 294.36983 * 4 2 1 35 35 H 1.08996 * 109.49653 * 54.47301 * 4 2 1 36 36 H 1.09008 * 109.45722 * 178.61268 * 5 4 2 37 37 H 1.08997 * 109.45086 * 58.65229 * 5 4 2 38 38 H 0.96997 * 119.99800 * 24.84295 * 8 6 5 39 39 H 1.07997 * 119.54063 * 0.02562 * 12 11 9 40 40 H 1.08004 * 119.94636 * 180.26509 * 13 12 11 41 41 H 1.08001 * 119.11345 * 180.02562 * 16 15 14 42 42 H 1.08004 * 120.04070 * 180.02562 * 17 16 15 43 43 H 1.08000 * 120.92093 * 180.02562 * 18 17 16 44 44 H 1.07998 * 120.29240 * 359.97438 * 20 11 9 45 45 H 1.09002 * 109.58245 * 185.57723 * 21 6 5 46 46 H 1.09001 * 109.58328 * 65.15806 * 21 6 5 47 47 H 0.96997 * 119.99522 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8955 1.0268 0.0000 4 6 2.0435 -0.7310 1.2446 5 6 3.5675 -0.8495 1.1691 6 6 3.9568 -1.6657 -0.0654 7 1 5.0412 -1.7696 -0.1058 8 7 3.3404 -2.9926 0.0112 9 6 3.8951 -4.0321 -0.6430 10 8 4.9067 -3.8687 -1.2972 11 6 3.2731 -5.3702 -0.5662 12 6 2.1056 -5.5557 0.1957 13 6 1.5130 -6.7736 0.2783 14 6 2.0700 -7.8772 -0.3950 15 7 1.5008 -9.0840 -0.3200 16 6 2.0104 -10.1195 -0.9423 17 6 3.1673 -10.0165 -1.7116 18 6 3.8005 -8.8124 -1.8313 19 6 3.2499 -7.7020 -1.1613 20 6 3.8470 -6.4363 -1.2399 21 6 3.4650 -0.9454 -1.3248 22 7 2.0226 -0.6980 -1.1953 23 6 1.1537 -1.1101 -2.1703 24 1 0.1439 -1.3910 -1.9102 25 6 1.5710 -1.1665 -3.4931 26 7 2.6865 -0.5703 -3.8573 27 14 0.5494 -2.0887 -4.7561 28 1 -0.4373 -1.1619 -5.3667 29 1 1.4404 -2.6300 -5.8136 30 1 -0.1671 -3.2072 -4.0921 31 1 -0.3634 -1.0276 0.0051 32 1 -0.3633 0.5183 0.8874 33 1 -0.3633 0.5095 -0.8926 34 1 1.7660 -0.1695 2.1367 35 1 1.6029 -1.7269 1.2892 36 1 3.9378 -1.3474 2.0653 37 1 4.0059 0.1460 1.0994 38 1 2.5331 -3.1228 0.5328 39 1 1.6724 -4.7161 0.7190 40 1 0.6144 -6.8973 0.8644 41 1 1.5198 -11.0778 -0.8567 42 1 3.5627 -10.8877 -2.2127 43 1 4.6980 -8.7138 -2.4238 44 1 4.7461 -6.2931 -1.8209 45 1 3.6518 -1.5692 -2.1990 46 1 3.9904 0.0037 -1.4316 47 1 2.9782 -0.6102 -4.7815 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001071788962.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:12:26 Heat of formation + Delta-G solvation = 40.854431 kcal Electronic energy + Delta-G solvation = -29844.993155 eV Core-core repulsion = 25992.996964 eV Total energy + Delta-G solvation = -3851.996190 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -40.94914 -39.55175 -37.78690 -36.54015 -34.21302 -33.59695 -32.74187 -31.39526 -30.19232 -30.05063 -29.77136 -26.32290 -25.15245 -24.55263 -23.92378 -22.26844 -22.15860 -21.17082 -20.44076 -18.82555 -18.35838 -17.79471 -16.97251 -16.27614 -15.94988 -15.36546 -15.03505 -14.64769 -14.52515 -14.20304 -14.14733 -13.94287 -13.87832 -13.56520 -13.44043 -13.23826 -13.15425 -12.83884 -12.50205 -12.13857 -11.95516 -11.59465 -11.53417 -11.21062 -11.16160 -10.95854 -10.88592 -10.72154 -10.69463 -10.39542 -10.33839 -9.96612 -9.67173 -9.60141 -9.48030 -9.39808 -8.91383 -8.45435 -8.44285 -8.27406 -6.57218 -5.74347 -3.19784 0.17493 0.58721 1.84438 2.48862 3.38175 3.46480 3.46869 3.51880 3.67762 4.10413 4.12563 4.46884 4.50994 4.55202 4.71721 4.86302 4.95369 5.06865 5.13858 5.30828 5.33714 5.36176 5.43385 5.50286 5.58923 5.64052 5.78880 5.83849 5.93608 6.00012 6.10099 6.13008 6.18881 6.27889 6.32210 6.34885 6.37265 6.43884 6.51243 6.59316 6.66372 6.67902 6.88879 7.05145 7.11665 7.37789 7.69160 7.73518 7.84711 8.05270 8.50777 8.71920 9.24718 9.88716 10.45409 11.33671 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.011444 B = 0.003865 C = 0.003461 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2446.051395 B = 7241.859952 C = 8088.493553 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.165 3.835 3 H 0.025 0.975 4 C -0.130 4.130 5 C -0.119 4.119 6 C 0.118 3.882 7 H 0.077 0.923 8 N -0.692 5.692 9 C 0.555 3.445 10 O -0.542 6.542 11 C -0.118 4.118 12 C -0.068 4.068 13 C -0.101 4.101 14 C 0.140 3.860 15 N -0.478 5.478 16 C 0.134 3.866 17 C -0.185 4.185 18 C -0.045 4.045 19 C -0.112 4.112 20 C -0.033 4.033 21 C 0.163 3.837 22 N -0.582 5.582 23 C -0.251 4.251 24 H 0.067 0.933 25 C 0.009 3.991 26 N -0.898 5.898 27 Si 0.893 3.107 28 H -0.287 1.287 29 H -0.290 1.290 30 H -0.280 1.280 31 H 0.051 0.949 32 H 0.036 0.964 33 H 0.061 0.939 34 H 0.053 0.947 35 H 0.053 0.947 36 H 0.051 0.949 37 H 0.071 0.929 38 H 0.395 0.605 39 H 0.134 0.866 40 H 0.140 0.860 41 H 0.159 0.841 42 H 0.138 0.862 43 H 0.141 0.859 44 H 0.145 0.855 45 H 0.095 0.905 46 H 0.026 0.974 47 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.867 -13.465 10.185 16.906 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.058 3.942 3 H 0.043 0.957 4 C -0.170 4.170 5 C -0.157 4.157 6 C 0.012 3.988 7 H 0.095 0.905 8 N -0.342 5.342 9 C 0.341 3.659 10 O -0.421 6.421 11 C -0.121 4.121 12 C -0.088 4.088 13 C -0.119 4.119 14 C 0.018 3.982 15 N -0.186 5.186 16 C -0.039 4.039 17 C -0.204 4.204 18 C -0.072 4.072 19 C -0.114 4.114 20 C -0.053 4.053 21 C 0.036 3.964 22 N -0.306 5.306 23 C -0.381 4.381 24 H 0.084 0.916 25 C -0.190 4.190 26 N -0.542 5.542 27 Si 0.723 3.277 28 H -0.214 1.214 29 H -0.216 1.216 30 H -0.206 1.206 31 H 0.070 0.930 32 H 0.056 0.944 33 H 0.080 0.920 34 H 0.072 0.928 35 H 0.072 0.928 36 H 0.070 0.930 37 H 0.090 0.910 38 H 0.231 0.769 39 H 0.151 0.849 40 H 0.157 0.843 41 H 0.176 0.824 42 H 0.155 0.845 43 H 0.159 0.841 44 H 0.163 0.837 45 H 0.113 0.887 46 H 0.044 0.956 47 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 0.876 -13.257 10.089 16.683 hybrid contribution -0.181 -0.431 -1.148 1.239 sum 0.695 -13.688 8.941 16.364 Atomic orbital electron populations 1.21793 0.96116 1.01175 1.00208 1.20469 0.92902 0.93654 0.87173 0.95742 1.22071 0.95138 1.00595 0.99178 1.21697 0.97032 1.00218 0.96750 1.21829 0.97001 0.81580 0.98384 0.90513 1.45774 1.29281 1.08630 1.50520 1.18001 0.84174 0.83945 0.79740 1.90755 1.25325 1.84938 1.41084 1.20135 0.96958 0.94572 1.00440 1.21003 0.93841 0.97441 0.96564 1.20645 1.00551 0.90671 1.00057 1.18980 0.91741 0.92131 0.95324 1.68049 1.31406 0.98813 1.20330 1.22986 0.92425 0.97315 0.91141 1.21862 0.97911 0.98792 1.01877 1.21572 0.98634 0.91688 0.95258 1.18810 0.97206 0.94887 1.00452 1.21444 0.98609 0.89882 0.95318 1.21163 0.83844 0.97004 0.94352 1.44024 1.02659 1.64877 1.18994 1.19038 0.95339 1.37860 0.85817 0.91579 1.25076 0.97623 0.99283 0.97055 1.69974 1.23594 1.43964 1.16685 0.86446 0.79583 0.79909 0.81742 1.21416 1.21642 1.20559 0.93005 0.94449 0.92018 0.92789 0.92819 0.92984 0.91004 0.76940 0.84861 0.84261 0.82430 0.84461 0.84089 0.83708 0.88698 0.95595 0.93680 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.41 7.96 37.16 0.30 -2.11 16 2 C 0.16 3.18 3.50 -67.60 -0.24 2.94 16 3 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 4 C -0.13 -2.01 5.21 -26.61 -0.14 -2.15 16 5 C -0.12 -1.82 5.58 -26.69 -0.15 -1.97 16 6 C 0.12 2.20 2.81 -67.81 -0.19 2.01 16 7 H 0.08 1.47 7.58 -51.93 -0.39 1.08 16 8 N -0.69 -12.18 4.87 -54.66 -0.27 -12.45 16 9 C 0.56 10.51 7.73 -12.37 -0.10 10.41 16 10 O -0.54 -12.03 15.97 5.31 0.08 -11.95 16 11 C -0.12 -1.90 5.87 -104.98 -0.62 -2.51 16 12 C -0.07 -0.94 9.44 -39.59 -0.37 -1.31 16 13 C -0.10 -1.33 9.95 -39.54 -0.39 -1.72 16 14 C 0.14 1.96 6.61 -84.77 -0.56 1.40 16 15 N -0.48 -6.27 10.33 -10.92 -0.11 -6.39 16 16 C 0.13 1.33 11.15 -17.46 -0.19 1.14 16 17 C -0.18 -1.64 10.03 -39.78 -0.40 -2.04 16 18 C -0.05 -0.48 9.89 -39.18 -0.39 -0.87 16 19 C -0.11 -1.51 5.74 -106.82 -0.61 -2.13 16 20 C -0.03 -0.49 9.35 -38.74 -0.36 -0.85 16 21 C 0.16 3.83 4.87 -3.71 -0.02 3.81 16 22 N -0.58 -13.62 2.90 -164.78 -0.48 -14.10 16 23 C -0.25 -6.56 8.55 -15.06 -0.13 -6.69 16 24 H 0.07 1.70 6.26 -52.49 -0.33 1.37 16 25 C 0.01 0.25 4.96 -17.43 -0.09 0.16 16 26 N -0.90 -26.30 11.22 55.49 0.62 -25.67 16 27 Si 0.89 22.14 29.58 -169.99 -5.03 17.11 16 28 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 29 H -0.29 -7.37 7.11 56.52 0.40 -6.97 16 30 H -0.28 -6.85 7.11 56.52 0.40 -6.44 16 31 H 0.05 0.92 7.44 -51.93 -0.39 0.53 16 32 H 0.04 0.55 8.14 -51.93 -0.42 0.13 16 33 H 0.06 1.21 7.63 -51.93 -0.40 0.82 16 34 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 35 H 0.05 0.80 6.40 -51.93 -0.33 0.47 16 36 H 0.05 0.69 8.14 -51.92 -0.42 0.27 16 37 H 0.07 1.09 8.14 -51.93 -0.42 0.66 16 38 H 0.39 6.13 4.76 -40.82 -0.19 5.94 16 39 H 0.13 1.57 6.35 -52.49 -0.33 1.24 16 40 H 0.14 1.56 8.06 -52.48 -0.42 1.14 16 41 H 0.16 1.02 8.06 -52.49 -0.42 0.60 16 42 H 0.14 0.77 8.06 -52.48 -0.42 0.34 16 43 H 0.14 1.15 8.06 -52.49 -0.42 0.73 16 44 H 0.15 2.10 7.62 -52.49 -0.40 1.70 16 45 H 0.09 2.65 6.18 -51.93 -0.32 2.33 16 46 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 47 H 0.25 7.29 8.31 -40.82 -0.34 6.95 16 LS Contribution 374.97 15.07 5.65 5.65 Total: -1.00 -32.83 374.97 -10.62 -43.45 By element: Atomic # 1 Polarization: 13.27 SS G_CDS: -6.45 Total: 6.82 kcal Atomic # 6 Polarization: 2.16 SS G_CDS: -4.65 Total: -2.48 kcal Atomic # 7 Polarization: -58.37 SS G_CDS: -0.23 Total: -58.61 kcal Atomic # 8 Polarization: -12.03 SS G_CDS: 0.08 Total: -11.95 kcal Atomic # 14 Polarization: 22.14 SS G_CDS: -5.03 Total: 17.11 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -32.83 -10.62 -43.45 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071788962.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.309 kcal (2) G-P(sol) polarization free energy of solvation -32.833 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.476 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.622 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.454 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.854 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds