Wall clock time and date at job start Tue Mar 31 2020 22:12:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08993 * 109.59010 * 2 1 4 4 C 1.53199 * 109.58227 * 120.42575 * 2 1 3 5 5 C 1.53045 * 109.30664 * 174.42001 * 4 2 1 6 6 C 1.53033 * 109.54008 * 298.63460 * 5 4 2 7 7 H 1.09004 * 109.49817 * 181.32152 * 6 5 4 8 8 N 1.46507 * 109.49711 * 301.41382 * 6 5 4 9 9 C 1.34774 * 120.00024 * 204.83883 * 8 6 5 10 10 O 1.21568 * 120.00158 * 359.97438 * 9 8 6 11 11 C 1.47762 * 120.00149 * 180.02562 * 9 8 6 12 12 C 1.40634 * 119.80255 * 359.72145 * 11 9 8 13 13 C 1.35700 * 120.91911 * 179.77472 * 12 11 9 14 14 C 1.40761 * 120.11466 * 0.47774 * 13 12 11 15 15 N 1.33648 * 120.83284 * 179.78477 * 14 13 12 16 16 C 1.31120 * 121.39527 * 180.02562 * 15 14 13 17 17 C 1.39310 * 121.76619 * 359.97438 * 16 15 14 18 18 C 1.36572 * 119.90755 * 0.02562 * 17 16 15 19 19 C 1.40889 * 118.16347 * 359.97438 * 18 17 16 20 20 C 1.38554 * 119.80795 * 180.02562 * 11 9 8 21 21 C 1.53192 * 109.31304 * 61.36680 * 6 5 4 22 22 N 1.46919 * 108.77705 * 305.36711 * 21 6 5 23 23 C 1.36937 * 120.62924 * 233.59154 * 22 21 6 24 24 H 1.08000 * 120.00417 * 149.29647 * 23 22 21 25 25 C 1.38822 * 119.99765 * 329.28823 * 23 22 21 26 26 N 1.31620 * 119.99894 * 345.75705 * 25 23 22 27 27 Si 1.86801 * 119.99668 * 165.75645 * 25 23 22 28 28 H 1.48506 * 109.46773 * 90.00394 * 27 25 23 29 29 H 1.48501 * 109.46790 * 210.00013 * 27 25 23 30 30 H 1.48498 * 109.47308 * 330.00413 * 27 25 23 31 31 H 1.08995 * 109.47615 * 180.28480 * 1 2 3 32 32 H 1.09002 * 109.46767 * 300.28859 * 1 2 3 33 33 H 1.09005 * 109.46985 * 60.28273 * 1 2 3 34 34 H 1.08997 * 109.49858 * 294.36983 * 4 2 1 35 35 H 1.08996 * 109.49653 * 54.47301 * 4 2 1 36 36 H 1.09008 * 109.45722 * 178.61268 * 5 4 2 37 37 H 1.08997 * 109.45086 * 58.65229 * 5 4 2 38 38 H 0.96997 * 119.99800 * 24.84295 * 8 6 5 39 39 H 1.07997 * 119.54063 * 0.02562 * 12 11 9 40 40 H 1.08004 * 119.94636 * 180.26509 * 13 12 11 41 41 H 1.08001 * 119.11345 * 180.02562 * 16 15 14 42 42 H 1.08004 * 120.04070 * 180.02562 * 17 16 15 43 43 H 1.08000 * 120.92093 * 180.02562 * 18 17 16 44 44 H 1.07998 * 120.29240 * 359.97438 * 20 11 9 45 45 H 1.09002 * 109.58245 * 185.57723 * 21 6 5 46 46 H 1.09001 * 109.58328 * 65.15806 * 21 6 5 47 47 H 0.96997 * 119.99522 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8955 1.0268 0.0000 4 6 2.0435 -0.7310 1.2446 5 6 3.5675 -0.8495 1.1691 6 6 3.9568 -1.6657 -0.0654 7 1 5.0412 -1.7696 -0.1058 8 7 3.3404 -2.9926 0.0112 9 6 3.8951 -4.0321 -0.6430 10 8 4.9067 -3.8687 -1.2972 11 6 3.2731 -5.3702 -0.5662 12 6 2.1056 -5.5557 0.1957 13 6 1.5130 -6.7736 0.2783 14 6 2.0700 -7.8772 -0.3950 15 7 1.5008 -9.0840 -0.3200 16 6 2.0104 -10.1195 -0.9423 17 6 3.1673 -10.0165 -1.7116 18 6 3.8005 -8.8124 -1.8313 19 6 3.2499 -7.7020 -1.1613 20 6 3.8470 -6.4363 -1.2399 21 6 3.4650 -0.9454 -1.3248 22 7 2.0226 -0.6980 -1.1953 23 6 1.1537 -1.1101 -2.1703 24 1 0.1439 -1.3910 -1.9102 25 6 1.5710 -1.1665 -3.4931 26 7 2.6865 -0.5703 -3.8573 27 14 0.5494 -2.0887 -4.7561 28 1 -0.4373 -1.1619 -5.3667 29 1 1.4404 -2.6300 -5.8136 30 1 -0.1671 -3.2072 -4.0921 31 1 -0.3634 -1.0276 0.0051 32 1 -0.3633 0.5183 0.8874 33 1 -0.3633 0.5095 -0.8926 34 1 1.7660 -0.1695 2.1367 35 1 1.6029 -1.7269 1.2892 36 1 3.9378 -1.3474 2.0653 37 1 4.0059 0.1460 1.0994 38 1 2.5331 -3.1228 0.5328 39 1 1.6724 -4.7161 0.7190 40 1 0.6144 -6.8973 0.8644 41 1 1.5198 -11.0778 -0.8567 42 1 3.5627 -10.8877 -2.2127 43 1 4.6980 -8.7138 -2.4238 44 1 4.7461 -6.2931 -1.8209 45 1 3.6518 -1.5692 -2.1990 46 1 3.9904 0.0037 -1.4316 47 1 2.9782 -0.6102 -4.7815 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001071788962.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:12:25 Heat of formation + Delta-G solvation = 20.470447 kcal Electronic energy + Delta-G solvation = -29845.877071 eV Core-core repulsion = 25992.996964 eV Total energy + Delta-G solvation = -3852.880106 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -41.94889 -40.94957 -39.27511 -37.66988 -35.84484 -34.59338 -34.44242 -32.69971 -31.77183 -31.21096 -31.04450 -27.90060 -26.87194 -25.72354 -24.86819 -23.89333 -23.24413 -22.44321 -21.99887 -20.41642 -19.54690 -18.84738 -18.26125 -17.78708 -17.24120 -16.81722 -16.54681 -16.04282 -15.76660 -15.58251 -15.47473 -15.30011 -15.09347 -14.95796 -14.71141 -14.46482 -14.41343 -14.03666 -13.99783 -13.65544 -13.10730 -12.98418 -12.90235 -12.68747 -12.63356 -12.52729 -12.46092 -12.42740 -12.14306 -12.08499 -11.61845 -11.57402 -11.23014 -11.06037 -10.97948 -10.54034 -10.52581 -10.05696 -9.79961 -9.34544 -8.54723 -7.82472 -5.28572 -0.80896 -0.35419 0.86350 1.37536 1.41055 1.43440 1.47217 2.19068 2.40209 2.48990 3.07596 3.26097 3.33996 3.53611 3.64116 3.66624 3.73556 3.94715 4.00060 4.03229 4.04517 4.10840 4.19612 4.28662 4.49979 4.50262 4.65400 4.73616 4.76282 4.83164 4.86401 4.94037 4.97458 5.00651 5.05709 5.09633 5.13007 5.18344 5.26298 5.28313 5.33676 5.47180 5.58601 5.62222 5.68031 5.73871 5.74406 5.75863 6.45313 6.62982 6.86308 7.19512 7.28827 7.93509 8.44551 9.22687 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.011444 B = 0.003865 C = 0.003461 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2446.051395 B = 7241.859952 C = 8088.493553 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C 0.153 3.847 3 H 0.014 0.986 4 C -0.120 4.120 5 C -0.111 4.111 6 C 0.127 3.873 7 H 0.066 0.934 8 N -0.683 5.683 9 C 0.550 3.450 10 O -0.588 6.588 11 C -0.144 4.144 12 C -0.071 4.071 13 C -0.100 4.100 14 C 0.123 3.877 15 N -0.505 5.505 16 C 0.139 3.861 17 C -0.169 4.169 18 C -0.057 4.057 19 C -0.129 4.129 20 C -0.037 4.037 21 C 0.173 3.827 22 N -0.594 5.594 23 C -0.235 4.235 24 H 0.075 0.925 25 C -0.051 4.051 26 N -0.936 5.936 27 Si 0.944 3.056 28 H -0.282 1.282 29 H -0.305 1.305 30 H -0.271 1.271 31 H 0.052 0.948 32 H 0.075 0.925 33 H 0.033 0.967 34 H 0.092 0.908 35 H 0.063 0.937 36 H 0.086 0.914 37 H 0.074 0.926 38 H 0.407 0.593 39 H 0.151 0.849 40 H 0.159 0.841 41 H 0.197 0.803 42 H 0.179 0.821 43 H 0.161 0.839 44 H 0.137 0.863 45 H 0.044 0.956 46 H -0.002 1.002 47 H 0.242 0.758 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.934 -16.065 12.695 20.497 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.048 3.952 3 H 0.031 0.969 4 C -0.158 4.158 5 C -0.149 4.149 6 C 0.021 3.979 7 H 0.085 0.915 8 N -0.333 5.333 9 C 0.338 3.662 10 O -0.470 6.470 11 C -0.147 4.147 12 C -0.091 4.091 13 C -0.119 4.119 14 C 0.002 3.998 15 N -0.213 5.213 16 C -0.033 4.033 17 C -0.188 4.188 18 C -0.083 4.083 19 C -0.131 4.131 20 C -0.057 4.057 21 C 0.046 3.954 22 N -0.318 5.318 23 C -0.366 4.366 24 H 0.093 0.907 25 C -0.246 4.246 26 N -0.583 5.583 27 Si 0.774 3.226 28 H -0.209 1.209 29 H -0.232 1.232 30 H -0.196 1.196 31 H 0.071 0.929 32 H 0.094 0.906 33 H 0.052 0.948 34 H 0.110 0.890 35 H 0.082 0.918 36 H 0.105 0.895 37 H 0.093 0.907 38 H 0.245 0.755 39 H 0.168 0.832 40 H 0.177 0.823 41 H 0.214 0.786 42 H 0.197 0.803 43 H 0.179 0.821 44 H 0.155 0.845 45 H 0.063 0.937 46 H 0.015 0.985 47 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges -0.977 -15.857 12.659 20.314 hybrid contribution 0.373 0.225 -1.926 1.975 sum -0.604 -15.632 10.732 18.972 Atomic orbital electron populations 1.21725 0.94686 1.01389 1.00775 1.20786 0.94192 0.93219 0.87010 0.96865 1.21968 0.94648 1.01088 0.98143 1.21675 0.97379 0.99937 0.95861 1.21544 0.96392 0.82183 0.97818 0.91548 1.45662 1.29559 1.07856 1.50235 1.18547 0.83650 0.85263 0.78753 1.90718 1.27425 1.85831 1.43019 1.20009 0.98602 0.93138 1.02921 1.21068 0.93100 0.98431 0.96550 1.20887 1.00914 0.90254 0.99829 1.19240 0.91997 0.93004 0.95552 1.68119 1.32243 0.99054 1.21903 1.23777 0.92357 0.97888 0.89314 1.22328 0.96762 0.99308 1.00423 1.21923 0.99577 0.91558 0.95251 1.18978 0.97621 0.95052 1.01419 1.21512 0.98476 0.90691 0.95061 1.20824 0.84294 0.95214 0.95054 1.44234 1.02144 1.65570 1.19834 1.19377 0.95681 1.35359 0.86137 0.90715 1.25724 0.98803 1.01080 0.99022 1.70146 1.25569 1.46480 1.16091 0.85609 0.78177 0.79140 0.79668 1.20862 1.23241 1.19557 0.92910 0.90590 0.94755 0.88994 0.91805 0.89501 0.90745 0.75498 0.83175 0.82336 0.78628 0.80334 0.82145 0.84501 0.93708 0.98453 0.94879 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.26 7.96 71.98 0.57 -3.69 16 2 C 0.15 5.68 3.50 44.98 0.16 5.84 16 3 H 0.01 0.54 8.14 -2.39 -0.02 0.52 16 4 C -0.12 -3.26 5.21 30.68 0.16 -3.10 16 5 C -0.11 -3.13 5.58 30.62 0.17 -2.96 16 6 C 0.13 4.81 2.81 45.07 0.13 4.93 16 7 H 0.07 2.66 7.58 -2.38 -0.02 2.64 16 8 N -0.68 -24.15 4.87 -445.11 -2.17 -26.31 16 9 C 0.55 21.69 7.73 86.76 0.67 22.36 16 10 O -0.59 -27.90 15.97 -3.93 -0.06 -27.96 16 11 C -0.14 -4.74 5.87 -20.10 -0.12 -4.86 16 12 C -0.07 -1.92 9.44 22.27 0.21 -1.71 16 13 C -0.10 -2.54 9.95 22.30 0.22 -2.31 16 14 C 0.12 3.30 6.61 40.36 0.27 3.57 16 15 N -0.50 -12.05 10.33 -188.45 -1.95 -14.00 16 16 C 0.14 2.25 11.15 85.06 0.95 3.20 16 17 C -0.17 -2.36 10.03 22.14 0.22 -2.14 16 18 C -0.06 -1.10 9.89 22.53 0.22 -0.88 16 19 C -0.13 -3.42 5.74 -21.29 -0.12 -3.54 16 20 C -0.04 -1.16 9.35 22.82 0.21 -0.95 16 21 C 0.17 8.55 4.87 86.36 0.42 8.97 16 22 N -0.59 -28.22 2.90 -675.24 -1.96 -30.17 16 23 C -0.23 -12.48 8.55 84.04 0.72 -11.76 16 24 H 0.08 3.80 6.26 -2.91 -0.02 3.78 16 25 C -0.05 -2.95 4.96 84.86 0.42 -2.52 16 26 N -0.94 -58.04 11.22 21.65 0.24 -57.80 16 27 Si 0.94 46.96 29.58 68.60 2.03 48.99 16 28 H -0.28 -13.61 7.11 99.48 0.71 -12.90 16 29 H -0.31 -15.78 7.11 99.48 0.71 -15.07 16 30 H -0.27 -12.85 7.11 99.48 0.71 -12.15 16 31 H 0.05 1.73 7.44 -2.39 -0.02 1.71 16 32 H 0.08 1.94 8.14 -2.39 -0.02 1.92 16 33 H 0.03 1.30 7.63 -2.38 -0.02 1.28 16 34 H 0.09 1.93 8.14 -2.39 -0.02 1.91 16 35 H 0.06 1.65 6.40 -2.39 -0.02 1.63 16 36 H 0.09 1.96 8.14 -2.38 -0.02 1.94 16 37 H 0.07 2.10 8.14 -2.39 -0.02 2.08 16 38 H 0.41 12.10 4.76 -92.71 -0.44 11.66 16 39 H 0.15 3.32 6.35 -2.91 -0.02 3.30 16 40 H 0.16 3.24 8.06 -2.91 -0.02 3.22 16 41 H 0.20 1.55 8.06 -2.91 -0.02 1.53 16 42 H 0.18 1.02 8.06 -2.91 -0.02 1.00 16 43 H 0.16 2.34 8.06 -2.91 -0.02 2.31 16 44 H 0.14 4.28 7.62 -2.91 -0.02 4.26 16 45 H 0.04 2.67 6.18 -2.39 -0.01 2.66 16 46 H 0.00 -0.13 8.14 -2.39 -0.02 -0.15 16 47 H 0.24 14.90 8.31 -92.71 -0.77 14.13 16 Total: -1.00 -77.78 374.97 2.18 -75.61 By element: Atomic # 1 Polarization: 22.65 SS G_CDS: 0.56 Total: 23.21 kcal Atomic # 6 Polarization: 2.96 SS G_CDS: 5.48 Total: 8.44 kcal Atomic # 7 Polarization: -122.46 SS G_CDS: -5.83 Total: -128.28 kcal Atomic # 8 Polarization: -27.90 SS G_CDS: -0.06 Total: -27.96 kcal Atomic # 14 Polarization: 46.96 SS G_CDS: 2.03 Total: 48.99 kcal Total: -77.78 2.18 -75.61 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071788962.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.077 kcal (2) G-P(sol) polarization free energy of solvation -77.783 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.294 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.176 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.607 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.470 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds