Wall clock time and date at job start Tue Mar 31 2020 22:12:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09005 * 109.70479 * 2 1 4 4 C 1.53203 * 109.58219 * 239.65183 * 2 1 3 5 5 C 1.53042 * 109.30744 * 185.57819 * 4 2 1 6 6 C 1.53353 * 109.60813 * 61.37521 * 5 4 2 7 7 H 1.09001 * 109.68308 * 178.74481 * 6 5 4 8 8 N 1.46499 * 109.47387 * 58.54646 * 6 5 4 9 9 C 1.34778 * 119.99375 * 155.37462 * 8 6 5 10 10 O 1.21545 * 120.00823 * 0.02562 * 9 8 6 11 11 C 1.47891 * 119.99369 * 180.02562 * 9 8 6 12 12 C 1.40567 * 119.70796 * 359.72518 * 11 9 8 13 13 C 1.35813 * 120.73555 * 179.77660 * 12 11 9 14 14 C 1.40541 * 119.98042 * 0.48251 * 13 12 11 15 15 C 1.40826 * 121.12859 * 179.75739 * 14 13 12 16 16 C 1.36549 * 118.19796 * 180.02562 * 15 14 13 17 17 C 1.39413 * 119.94053 * 359.97438 * 16 15 14 18 18 N 1.31023 * 121.71725 * 0.02596 * 17 16 15 19 19 C 1.33748 * 121.34766 * 359.95322 * 18 17 16 20 20 C 1.38406 * 119.70349 * 180.02562 * 11 9 8 21 21 C 1.53188 * 109.14868 * 298.70515 * 6 5 4 22 22 N 1.46920 * 109.58765 * 120.36206 * 2 1 3 23 23 C 1.36935 * 120.63248 * 353.37385 * 22 2 1 24 24 H 1.08001 * 119.99701 * 41.20329 * 23 22 2 25 25 C 1.38812 * 120.00277 * 221.20361 * 23 22 2 26 26 N 1.31614 * 120.00488 * 214.88125 * 25 23 22 27 27 Si 1.86805 * 119.99561 * 34.88046 * 25 23 22 28 28 H 1.48498 * 109.47182 * 84.62620 * 27 25 23 29 29 H 1.48501 * 109.46955 * 204.62654 * 27 25 23 30 30 H 1.48504 * 109.47350 * 324.62550 * 27 25 23 31 31 H 1.08998 * 109.46549 * 299.64103 * 1 2 3 32 32 H 1.08998 * 109.47036 * 59.63634 * 1 2 3 33 33 H 1.09002 * 109.47062 * 179.63902 * 1 2 3 34 34 H 1.08997 * 109.49741 * 305.52678 * 4 2 1 35 35 H 1.08993 * 109.49717 * 65.59702 * 4 2 1 36 36 H 1.08997 * 109.45815 * 181.38587 * 5 4 2 37 37 H 1.09000 * 109.46289 * 301.35199 * 5 4 2 38 38 H 0.96991 * 119.99906 * 335.37876 * 8 6 5 39 39 H 1.08003 * 119.63380 * 0.02562 * 12 11 9 40 40 H 1.08000 * 120.00821 * 180.23799 * 13 12 11 41 41 H 1.08005 * 120.89747 * 359.97438 * 15 14 13 42 42 H 1.08004 * 120.03286 * 180.02562 * 16 15 14 43 43 H 1.07998 * 119.14804 * 179.97438 * 17 16 15 44 44 H 1.08000 * 120.23044 * 0.02562 * 20 11 9 45 45 H 1.09000 * 109.59155 * 294.72762 * 21 6 5 46 46 H 1.08997 * 109.59019 * 174.43416 * 21 6 5 47 47 H 0.96994 * 120.00459 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8975 1.0262 0.0000 4 6 2.0435 -0.7293 -1.2456 5 6 3.5674 -0.8479 -1.1703 6 6 3.9594 -1.6675 0.0651 7 1 5.0436 -1.7716 0.1078 8 7 3.3428 -2.9941 -0.0131 9 6 3.8960 -4.0338 0.6423 10 8 4.9060 -3.8709 1.2985 11 6 3.2738 -5.3732 0.5629 12 6 2.1025 -5.5535 -0.1930 13 6 1.5163 -6.7752 -0.2839 14 6 2.0752 -7.8743 0.3906 15 6 1.4846 -9.1506 0.3172 16 6 2.0775 -10.1760 0.9965 17 6 3.2361 -9.9426 1.7360 18 7 3.7832 -8.7540 1.8024 19 6 3.2532 -7.7072 1.1603 20 6 3.8466 -6.4366 1.2388 21 6 3.4651 -0.9472 1.3235 22 7 2.0226 -0.6996 1.1943 23 6 1.1538 -1.1129 2.1688 24 1 0.2057 -1.5523 1.8960 25 6 1.4917 -0.9671 3.5073 26 7 1.1108 -1.8714 4.3845 27 14 2.4871 0.5126 4.0633 28 1 1.5754 1.6590 4.3075 29 1 3.2105 0.1797 5.3168 30 1 3.4667 0.8752 3.0078 31 1 -0.3632 0.5083 0.8932 32 1 -0.3633 0.5195 -0.8867 33 1 -0.3633 -1.0277 -0.0065 34 1 1.6029 -1.7252 -1.2916 35 1 1.7655 -0.1669 -2.1369 36 1 3.9377 -1.3446 -2.0671 37 1 4.0061 0.1474 -1.0993 38 1 2.5367 -3.1241 -0.5364 39 1 1.6661 -4.7120 -0.7106 40 1 0.6187 -6.9013 -0.8712 41 1 0.5865 -9.3137 -0.2602 42 1 1.6498 -11.1671 0.9604 43 1 3.6942 -10.7628 2.2688 44 1 4.7436 -6.2903 1.8222 45 1 3.9903 0.0018 1.4315 46 1 3.6521 -1.5699 2.1983 47 1 1.3472 -1.7697 5.3197 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001071913796.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:12:47 Heat of formation + Delta-G solvation = 22.020459 kcal Electronic energy + Delta-G solvation = -29769.706477 eV Core-core repulsion = 25916.893584 eV Total energy + Delta-G solvation = -3852.812893 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -41.93853 -41.00610 -39.36208 -37.69825 -35.88190 -34.51155 -34.45541 -32.70301 -32.51526 -31.20075 -31.03430 -28.00538 -26.74386 -25.74888 -24.86397 -24.09333 -23.22772 -22.40823 -21.97384 -20.56933 -19.65933 -18.60318 -18.32461 -17.77174 -17.34800 -16.93091 -16.73313 -16.17644 -15.94236 -15.49836 -15.47211 -15.30003 -15.11137 -14.94060 -14.83478 -14.55958 -14.42543 -14.34883 -13.90685 -13.82291 -13.43814 -12.99234 -12.94187 -12.73348 -12.71371 -12.57740 -12.51829 -12.45607 -12.16103 -11.80962 -11.60526 -11.54594 -11.37228 -11.15466 -11.02978 -10.51764 -10.48456 -10.07475 -9.78303 -9.32404 -8.55271 -8.25245 -5.47705 -0.75680 -0.34612 0.88295 1.32125 1.38487 1.44613 1.49216 2.12635 2.36897 2.47354 2.95042 3.10002 3.29818 3.44855 3.54524 3.67003 3.84547 3.92159 3.98008 4.04444 4.06608 4.08805 4.16211 4.30254 4.37932 4.57859 4.61824 4.64466 4.72850 4.74818 4.84656 4.87636 4.93400 5.02816 5.03607 5.08456 5.11216 5.13955 5.19372 5.25713 5.29947 5.31748 5.50916 5.58642 5.60148 5.67964 5.79586 5.95103 6.29566 6.57640 6.92284 7.05067 7.23304 7.70615 8.20927 8.94414 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.013215 B = 0.003538 C = 0.003299 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2118.368335 B = 7911.916638 C = 8486.163721 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C 0.151 3.849 3 H 0.032 0.968 4 C -0.121 4.121 5 C -0.109 4.109 6 C 0.129 3.871 7 H 0.075 0.925 8 N -0.682 5.682 9 C 0.550 3.450 10 O -0.588 6.588 11 C -0.119 4.119 12 C -0.098 4.098 13 C -0.084 4.084 14 C -0.103 4.103 15 C -0.056 4.056 16 C -0.162 4.162 17 C 0.125 3.875 18 N -0.515 5.515 19 C 0.094 3.906 20 C -0.057 4.057 21 C 0.134 3.866 22 N -0.599 5.599 23 C -0.239 4.239 24 H 0.054 0.946 25 C -0.004 4.004 26 N -0.928 5.928 27 Si 0.888 3.112 28 H -0.288 1.288 29 H -0.315 1.315 30 H -0.246 1.246 31 H 0.033 0.967 32 H 0.078 0.922 33 H 0.044 0.956 34 H 0.061 0.939 35 H 0.096 0.904 36 H 0.089 0.911 37 H 0.084 0.916 38 H 0.408 0.592 39 H 0.150 0.850 40 H 0.180 0.820 41 H 0.182 0.818 42 H 0.183 0.817 43 H 0.189 0.811 44 H 0.118 0.882 45 H 0.032 0.968 46 H 0.022 0.978 47 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.753 -12.718 -18.264 22.324 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.047 3.953 3 H 0.050 0.950 4 C -0.160 4.160 5 C -0.147 4.147 6 C 0.022 3.978 7 H 0.094 0.906 8 N -0.333 5.333 9 C 0.338 3.662 10 O -0.471 6.471 11 C -0.124 4.124 12 C -0.116 4.116 13 C -0.102 4.102 14 C -0.105 4.105 15 C -0.082 4.082 16 C -0.181 4.181 17 C -0.048 4.048 18 N -0.224 5.224 19 C -0.026 4.026 20 C -0.077 4.077 21 C 0.008 3.992 22 N -0.324 5.324 23 C -0.369 4.369 24 H 0.071 0.929 25 C -0.202 4.202 26 N -0.571 5.571 27 Si 0.716 3.284 28 H -0.215 1.215 29 H -0.243 1.243 30 H -0.171 1.171 31 H 0.052 0.948 32 H 0.097 0.903 33 H 0.064 0.936 34 H 0.079 0.921 35 H 0.115 0.885 36 H 0.108 0.892 37 H 0.102 0.898 38 H 0.247 0.753 39 H 0.168 0.832 40 H 0.197 0.803 41 H 0.200 0.800 42 H 0.200 0.800 43 H 0.206 0.794 44 H 0.136 0.864 45 H 0.050 0.950 46 H 0.040 0.960 47 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -0.300 -12.329 -17.216 21.178 hybrid contribution -0.195 0.837 1.221 1.493 sum -0.495 -11.492 -15.995 19.702 Atomic orbital electron populations 1.21694 0.94791 1.01185 1.00773 1.20929 0.94187 0.93753 0.86447 0.94981 1.21970 0.94699 1.01139 0.98180 1.21744 0.97226 1.00191 0.95560 1.21560 0.96848 0.82023 0.97323 0.90650 1.45643 1.29760 1.07754 1.50100 1.18574 0.83520 0.85400 0.78693 1.90703 1.27579 1.85878 1.42901 1.19945 0.98254 0.92621 1.01590 1.21147 0.93327 0.99456 0.97656 1.21322 1.00316 0.90350 0.98181 1.19287 0.95532 0.97164 0.98499 1.22012 0.99638 0.89819 0.96710 1.22419 0.96289 1.02344 0.97097 1.23714 0.92951 0.93680 0.94419 1.67995 1.33434 1.00665 1.20287 1.18815 0.94213 0.92702 0.96861 1.21123 0.99147 0.90767 0.96635 1.21571 0.85378 0.96223 0.96072 1.44421 1.01582 1.65890 1.20468 1.18427 1.01270 1.32416 0.84757 0.92870 1.26061 0.98657 0.98757 0.96718 1.70172 1.50489 1.33136 1.03260 0.86612 0.79768 0.84492 0.77496 1.21536 1.24260 1.17059 0.94815 0.90317 0.93639 0.92078 0.88517 0.89224 0.89783 0.75277 0.83210 0.80287 0.80040 0.79974 0.79393 0.86402 0.95014 0.95956 0.93515 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.09 8.07 71.98 0.58 -3.51 16 2 C 0.15 5.09 3.50 44.98 0.16 5.25 16 3 H 0.03 1.09 8.14 -2.38 -0.02 1.07 16 4 C -0.12 -2.94 5.21 30.68 0.16 -2.78 16 5 C -0.11 -2.67 5.59 30.73 0.17 -2.50 16 6 C 0.13 4.45 2.83 45.17 0.13 4.58 16 7 H 0.08 2.71 7.58 -2.39 -0.02 2.69 16 8 N -0.68 -23.51 4.87 -444.50 -2.16 -25.67 16 9 C 0.55 22.36 7.73 86.80 0.67 23.03 16 10 O -0.59 -28.76 15.96 -3.86 -0.06 -28.82 16 11 C -0.12 -4.24 5.87 -20.11 -0.12 -4.36 16 12 C -0.10 -2.59 9.44 22.28 0.21 -2.38 16 13 C -0.08 -1.77 9.73 22.27 0.22 -1.55 16 14 C -0.10 -2.47 5.75 -21.23 -0.12 -2.60 16 15 C -0.06 -0.86 9.88 22.51 0.22 -0.64 16 16 C -0.16 -2.18 10.03 22.16 0.22 -1.96 16 17 C 0.13 2.45 11.15 85.10 0.95 3.40 16 18 N -0.51 -15.54 10.34 -188.66 -1.95 -17.49 16 19 C 0.09 3.00 6.60 40.25 0.27 3.27 16 20 C -0.06 -2.12 9.56 22.85 0.22 -1.90 16 21 C 0.13 5.93 4.19 86.36 0.36 6.29 16 22 N -0.60 -26.46 2.39 -675.20 -1.61 -28.07 16 23 C -0.24 -12.92 8.42 84.03 0.71 -12.21 16 24 H 0.05 3.08 6.83 -2.91 -0.02 3.06 16 25 C 0.00 -0.22 4.82 84.86 0.41 0.19 16 26 N -0.93 -59.44 13.97 21.65 0.30 -59.14 16 27 Si 0.89 46.86 27.39 68.60 1.88 48.74 16 28 H -0.29 -14.95 7.11 99.48 0.71 -14.24 16 29 H -0.31 -17.36 7.11 99.48 0.71 -16.66 16 30 H -0.25 -12.19 5.24 99.48 0.52 -11.67 16 31 H 0.03 1.26 7.68 -2.39 -0.02 1.24 16 32 H 0.08 1.89 8.14 -2.39 -0.02 1.87 16 33 H 0.04 1.53 7.42 -2.39 -0.02 1.51 16 34 H 0.06 1.46 6.41 -2.39 -0.02 1.45 16 35 H 0.10 1.72 8.14 -2.39 -0.02 1.70 16 36 H 0.09 1.72 8.14 -2.39 -0.02 1.70 16 37 H 0.08 1.92 8.14 -2.39 -0.02 1.91 16 38 H 0.41 11.81 4.76 -92.71 -0.44 11.37 16 39 H 0.15 3.21 6.34 -2.91 -0.02 3.20 16 40 H 0.18 2.11 8.06 -2.91 -0.02 2.09 16 41 H 0.18 1.21 8.06 -2.91 -0.02 1.19 16 42 H 0.18 0.80 8.06 -2.91 -0.02 0.78 16 43 H 0.19 2.28 8.06 -2.91 -0.02 2.25 16 44 H 0.12 4.90 7.60 -2.91 -0.02 4.88 16 45 H 0.03 1.40 6.71 -2.39 -0.02 1.38 16 46 H 0.02 1.20 7.01 -2.39 -0.02 1.18 16 47 H 0.26 15.97 8.31 -92.71 -0.77 15.20 16 Total: -1.00 -83.84 372.34 2.17 -81.66 By element: Atomic # 1 Polarization: 18.78 SS G_CDS: 0.37 Total: 19.15 kcal Atomic # 6 Polarization: 4.23 SS G_CDS: 5.41 Total: 9.64 kcal Atomic # 7 Polarization: -124.95 SS G_CDS: -5.42 Total: -130.37 kcal Atomic # 8 Polarization: -28.76 SS G_CDS: -0.06 Total: -28.82 kcal Atomic # 14 Polarization: 46.86 SS G_CDS: 1.88 Total: 48.74 kcal Total: -83.84 2.17 -81.66 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071913796.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.685 kcal (2) G-P(sol) polarization free energy of solvation -83.839 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.846 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.175 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.665 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.020 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds