Wall clock time and date at job start Tue Mar 31 2020 22:12:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09006 * 109.58074 * 2 1 4 4 C 1.53190 * 109.58543 * 239.72049 * 2 1 3 5 5 C 1.53037 * 109.31390 * 185.57431 * 4 2 1 6 6 C 1.53042 * 109.53593 * 61.36143 * 5 4 2 7 7 H 1.08993 * 109.49603 * 58.62548 * 6 5 4 8 8 N 1.46507 * 109.49369 * 178.68611 * 6 5 4 9 9 C 1.34777 * 119.99646 * 204.93508 * 8 6 5 10 10 O 1.21550 * 120.00158 * 0.02562 * 9 8 6 11 11 C 1.47878 * 120.00125 * 180.27641 * 9 8 6 12 12 C 1.40575 * 119.70509 * 359.45398 * 11 9 8 13 13 C 1.35813 * 120.73712 * 179.73316 * 12 11 9 14 14 C 1.40549 * 119.98072 * 0.51972 * 13 12 11 15 15 C 1.40819 * 121.12826 * 179.74227 * 14 13 12 16 16 C 1.36551 * 118.20235 * 180.02562 * 15 14 13 17 17 C 1.39420 * 119.92954 * 359.97438 * 16 15 14 18 18 N 1.31022 * 121.72099 * 0.02562 * 17 16 15 19 19 C 1.33740 * 121.34745 * 359.95805 * 18 17 16 20 20 C 1.38413 * 119.71032 * 179.72786 * 11 9 8 21 21 C 1.53191 * 109.34138 * 298.65058 * 6 5 4 22 22 N 1.46919 * 109.59043 * 120.42739 * 2 1 3 23 23 C 1.36945 * 120.63178 * 353.40232 * 22 2 1 24 24 H 1.08004 * 119.99454 * 29.01270 * 23 22 2 25 25 C 1.38806 * 120.00085 * 209.02037 * 23 22 2 26 26 N 1.31625 * 120.00173 * 15.00906 * 25 23 22 27 27 Si 1.86796 * 119.99853 * 195.01384 * 25 23 22 28 28 H 1.48499 * 109.47204 * 89.99915 * 27 25 23 29 29 H 1.48500 * 109.47125 * 209.99509 * 27 25 23 30 30 H 1.48498 * 109.47461 * 329.99727 * 27 25 23 31 31 H 1.09007 * 109.46673 * 180.27987 * 1 2 3 32 32 H 1.08993 * 109.46866 * 300.27860 * 1 2 3 33 33 H 1.08996 * 109.47422 * 60.28605 * 1 2 3 34 34 H 1.09000 * 109.49911 * 65.62569 * 4 2 1 35 35 H 1.09000 * 109.49950 * 305.52726 * 4 2 1 36 36 H 1.09003 * 109.46185 * 301.34526 * 5 4 2 37 37 H 1.08993 * 109.45395 * 181.37832 * 5 4 2 38 38 H 0.96992 * 120.00650 * 24.94066 * 8 6 5 39 39 H 1.08006 * 119.63049 * 0.02562 * 12 11 9 40 40 H 1.08004 * 120.01130 * 180.28212 * 13 12 11 41 41 H 1.08006 * 120.89714 * 0.03468 * 15 14 13 42 42 H 1.07992 * 120.03768 * 180.02562 * 16 15 14 43 43 H 1.08006 * 119.14149 * 180.02562 * 17 16 15 44 44 H 1.07995 * 120.22938 * 359.97436 * 20 11 9 45 45 H 1.09004 * 109.58364 * 174.40500 * 21 6 5 46 46 H 1.08998 * 109.58857 * 294.83403 * 21 6 5 47 47 H 0.96991 * 119.99978 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8954 1.0270 0.0000 4 6 2.0436 -0.7277 -1.2464 5 6 3.5675 -0.8464 -1.1713 6 6 3.9570 -1.6656 0.0612 7 1 3.4989 -2.6529 0.0014 8 7 5.4144 -1.8052 0.1150 9 6 5.9679 -2.8481 0.7649 10 8 5.2579 -3.6731 1.3061 11 6 7.4390 -2.9858 0.8245 12 6 8.2542 -2.0315 0.1912 13 6 9.6076 -2.1346 0.2372 14 6 10.2075 -3.2103 0.9143 15 6 11.6081 -3.3437 0.9725 16 6 12.1271 -4.4122 1.6459 17 6 11.2741 -5.3334 2.2523 18 7 9.9713 -5.2064 2.1963 19 6 9.3989 -4.1829 1.5531 20 6 8.0011 -4.0562 1.4984 21 6 3.4651 -0.9492 1.3228 22 7 2.0227 -0.7010 1.1935 23 6 1.1538 -1.1159 2.1673 24 1 0.1361 -1.3702 1.9103 25 6 1.5811 -1.2096 3.4847 26 7 2.7044 -0.6319 3.8549 27 14 0.5622 -2.1558 4.7320 28 1 0.9964 -3.5757 4.7509 29 1 0.7529 -1.5619 6.0796 30 1 -0.8728 -2.0819 4.3571 31 1 -0.3633 -1.0277 0.0050 32 1 -0.3633 0.5181 0.8874 33 1 -0.3634 0.5094 -0.8925 34 1 1.7660 -0.1640 -2.1370 35 1 1.6030 -1.7236 -1.2936 36 1 4.0061 0.1489 -1.0992 37 1 3.9376 -1.3421 -2.0687 38 1 5.9809 -1.1471 -0.3170 39 1 7.7991 -1.2046 -0.3338 40 1 10.2227 -1.3922 -0.2497 41 1 12.2544 -2.6203 0.4975 42 1 13.1972 -4.5432 1.7095 43 1 11.6983 -6.1736 2.7820 44 1 7.3694 -4.7881 1.9795 45 1 3.6519 -1.5757 2.1951 46 1 3.9903 -0.0004 1.4325 47 1 3.0031 -0.6977 4.7753 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001071913797.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:12:51 Heat of formation + Delta-G solvation = 16.948542 kcal Electronic energy + Delta-G solvation = -28922.647349 eV Core-core repulsion = 25069.614522 eV Total energy + Delta-G solvation = -3853.032827 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -41.96064 -40.93358 -39.33364 -37.73759 -36.11604 -34.68729 -34.48558 -32.70596 -31.79907 -31.22839 -31.05565 -27.85097 -26.98471 -25.57827 -24.88027 -24.01265 -23.20828 -22.40992 -21.81270 -21.01911 -19.47404 -18.55628 -18.34364 -17.90185 -17.32080 -17.08586 -16.67673 -16.09910 -15.76212 -15.50877 -15.48747 -15.28701 -15.12577 -14.96149 -14.89948 -14.58453 -14.46791 -14.11506 -13.91504 -13.52101 -13.10240 -12.97507 -12.80799 -12.75591 -12.70300 -12.59583 -12.51540 -12.27820 -12.12175 -11.97957 -11.67091 -11.57080 -11.45146 -11.16342 -11.00836 -10.55846 -10.49485 -10.19093 -9.83253 -9.35103 -8.63783 -7.86521 -5.32539 -0.78901 -0.37203 0.85791 1.37904 1.43891 1.45953 1.48896 2.02754 2.28311 2.48796 3.07763 3.25063 3.30896 3.51111 3.58565 3.73009 3.83271 3.91443 3.98119 4.04141 4.06063 4.09480 4.24919 4.30165 4.38810 4.57131 4.60007 4.71223 4.71546 4.79199 4.85362 4.89427 4.94374 5.01168 5.06803 5.07864 5.17151 5.18527 5.28411 5.30214 5.32921 5.42604 5.52195 5.55044 5.61434 5.69471 5.77346 5.79687 6.39493 6.54253 6.91148 7.13856 7.21853 7.89350 8.37644 9.18210 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.014567 B = 0.002867 C = 0.002510 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1921.741148 B = 9765.500136 C =11151.598903 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.153 3.847 3 H 0.025 0.975 4 C -0.118 4.118 5 C -0.107 4.107 6 C 0.130 3.870 7 H 0.049 0.951 8 N -0.696 5.696 9 C 0.545 3.455 10 O -0.585 6.585 11 C -0.117 4.117 12 C -0.098 4.098 13 C -0.079 4.079 14 C -0.102 4.102 15 C -0.054 4.054 16 C -0.162 4.162 17 C 0.125 3.875 18 N -0.518 5.518 19 C 0.093 3.907 20 C -0.058 4.058 21 C 0.179 3.821 22 N -0.603 5.603 23 C -0.248 4.248 24 H 0.076 0.924 25 C -0.056 4.056 26 N -0.934 5.934 27 Si 0.955 3.045 28 H -0.299 1.299 29 H -0.294 1.294 30 H -0.259 1.259 31 H 0.044 0.956 32 H 0.037 0.963 33 H 0.080 0.920 34 H 0.099 0.901 35 H 0.050 0.950 36 H 0.078 0.922 37 H 0.087 0.913 38 H 0.414 0.586 39 H 0.162 0.838 40 H 0.185 0.815 41 H 0.185 0.815 42 H 0.182 0.818 43 H 0.187 0.813 44 H 0.113 0.887 45 H 0.040 0.960 46 H 0.001 0.999 47 H 0.243 0.757 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.537 -0.008 -14.476 25.950 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.048 3.952 3 H 0.043 0.957 4 C -0.158 4.158 5 C -0.145 4.145 6 C 0.024 3.976 7 H 0.067 0.933 8 N -0.348 5.348 9 C 0.333 3.667 10 O -0.466 6.466 11 C -0.122 4.122 12 C -0.116 4.116 13 C -0.097 4.097 14 C -0.104 4.104 15 C -0.080 4.080 16 C -0.182 4.182 17 C -0.047 4.047 18 N -0.227 5.227 19 C -0.026 4.026 20 C -0.078 4.078 21 C 0.052 3.948 22 N -0.327 5.327 23 C -0.379 4.379 24 H 0.093 0.907 25 C -0.251 4.251 26 N -0.580 5.580 27 Si 0.784 3.216 28 H -0.227 1.227 29 H -0.220 1.220 30 H -0.183 1.183 31 H 0.063 0.937 32 H 0.056 0.944 33 H 0.099 0.901 34 H 0.117 0.883 35 H 0.069 0.931 36 H 0.096 0.904 37 H 0.106 0.894 38 H 0.253 0.747 39 H 0.179 0.821 40 H 0.202 0.798 41 H 0.202 0.798 42 H 0.199 0.801 43 H 0.203 0.797 44 H 0.131 0.869 45 H 0.058 0.942 46 H 0.019 0.981 47 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges 20.367 -1.102 -13.593 24.511 hybrid contribution -0.190 -0.090 1.204 1.222 sum 20.177 -1.192 -12.390 23.707 Atomic orbital electron populations 1.21741 0.94799 1.01087 1.01106 1.20824 0.94282 0.93483 0.86621 0.95732 1.21961 0.94562 1.00859 0.98392 1.21658 0.97146 1.00071 0.95580 1.21592 0.78759 0.99228 0.98054 0.93265 1.45748 1.07902 1.26355 1.54775 1.18786 0.88497 0.81399 0.77999 1.90794 1.64507 1.44346 1.46980 1.19876 0.91883 0.98030 1.02451 1.21229 0.94321 0.97838 0.98230 1.21373 0.94414 0.96812 0.97069 1.19314 0.95863 0.96184 0.99068 1.22031 0.92259 0.98119 0.95552 1.22425 1.03503 0.94645 0.97597 1.23700 0.87760 0.98906 0.94378 1.67997 1.15304 1.21839 1.17531 1.18812 0.93151 0.93088 0.97579 1.21137 0.93516 0.96814 0.96326 1.20768 0.83855 0.95349 0.94838 1.44327 1.02487 1.65547 1.20388 1.19497 0.95194 1.36450 0.86722 0.90660 1.25796 0.99078 1.01151 0.99035 1.70153 1.25064 1.46404 1.16403 0.85434 0.79451 0.77934 0.78768 1.22695 1.22020 1.18331 0.93692 0.94360 0.90124 0.88308 0.93102 0.90358 0.89420 0.74732 0.82071 0.79764 0.79783 0.80066 0.79651 0.86899 0.94162 0.98115 0.94781 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.70 7.94 71.98 0.57 -4.13 16 2 C 0.15 6.09 3.50 44.98 0.16 6.24 16 3 H 0.02 1.00 8.14 -2.38 -0.02 0.98 16 4 C -0.12 -3.66 5.37 30.67 0.16 -3.49 16 5 C -0.11 -3.11 5.35 30.62 0.16 -2.94 16 6 C 0.13 5.18 2.60 45.07 0.12 5.29 16 7 H 0.05 2.32 7.58 -2.39 -0.02 2.30 16 8 N -0.70 -23.36 5.03 -445.00 -2.24 -25.60 16 9 C 0.55 21.56 7.73 86.80 0.67 22.24 16 10 O -0.59 -30.10 15.96 -3.87 -0.06 -30.16 16 11 C -0.12 -3.71 5.87 -20.11 -0.12 -3.82 16 12 C -0.10 -2.00 9.44 22.28 0.21 -1.79 16 13 C -0.08 -1.22 9.74 22.27 0.22 -1.00 16 14 C -0.10 -2.01 5.75 -21.23 -0.12 -2.13 16 15 C -0.05 -0.62 9.88 22.51 0.22 -0.39 16 16 C -0.16 -1.70 10.03 22.16 0.22 -1.48 16 17 C 0.13 2.15 11.15 85.10 0.95 3.10 16 18 N -0.52 -14.34 10.34 -188.65 -1.95 -16.29 16 19 C 0.09 2.68 6.60 40.25 0.27 2.94 16 20 C -0.06 -1.99 9.56 22.85 0.22 -1.77 16 21 C 0.18 9.19 4.86 86.36 0.42 9.61 16 22 N -0.60 -31.08 2.99 -675.21 -2.02 -33.10 16 23 C -0.25 -14.21 8.61 84.03 0.72 -13.49 16 24 H 0.08 4.15 6.20 -2.91 -0.02 4.13 16 25 C -0.06 -3.35 4.96 84.86 0.42 -2.93 16 26 N -0.93 -59.54 11.14 21.65 0.24 -59.30 16 27 Si 0.95 49.06 29.58 68.60 2.03 51.09 16 28 H -0.30 -15.84 7.11 99.48 0.71 -15.14 16 29 H -0.29 -15.02 7.11 99.48 0.71 -14.31 16 30 H -0.26 -12.30 7.11 99.48 0.71 -11.60 16 31 H 0.04 1.68 7.40 -2.38 -0.02 1.66 16 32 H 0.04 1.53 7.66 -2.39 -0.02 1.51 16 33 H 0.08 2.22 8.14 -2.39 -0.02 2.20 16 34 H 0.10 2.28 8.14 -2.39 -0.02 2.26 16 35 H 0.05 1.70 8.14 -2.39 -0.02 1.68 16 36 H 0.08 2.04 8.14 -2.39 -0.02 2.02 16 37 H 0.09 2.02 8.14 -2.39 -0.02 2.00 16 38 H 0.41 9.80 6.58 -92.71 -0.61 9.18 16 39 H 0.16 2.19 6.34 -2.91 -0.02 2.17 16 40 H 0.19 1.04 8.06 -2.91 -0.02 1.01 16 41 H 0.18 0.46 8.06 -2.91 -0.02 0.44 16 42 H 0.18 0.33 8.06 -2.91 -0.02 0.31 16 43 H 0.19 1.91 8.06 -2.91 -0.02 1.89 16 44 H 0.11 4.53 7.60 -2.91 -0.02 4.51 16 45 H 0.04 2.52 6.07 -2.38 -0.01 2.50 16 46 H 0.00 0.04 8.14 -2.39 -0.02 0.03 16 47 H 0.24 15.29 8.31 -92.71 -0.77 14.52 16 Total: -1.00 -88.91 378.27 1.86 -87.05 By element: Atomic # 1 Polarization: 15.88 SS G_CDS: 0.38 Total: 16.26 kcal Atomic # 6 Polarization: 4.58 SS G_CDS: 5.48 Total: 10.05 kcal Atomic # 7 Polarization: -128.33 SS G_CDS: -5.97 Total: -134.29 kcal Atomic # 8 Polarization: -30.10 SS G_CDS: -0.06 Total: -30.16 kcal Atomic # 14 Polarization: 49.06 SS G_CDS: 2.03 Total: 51.09 kcal Total: -88.91 1.86 -87.05 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071913797.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.003 kcal (2) G-P(sol) polarization free energy of solvation -88.912 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.090 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.858 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.054 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.949 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds