Wall clock time and date at job start Tue Mar 31 2020 22:12:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09004 * 109.57897 * 2 1 4 4 C 1.53190 * 109.58710 * 239.71342 * 2 1 3 5 5 C 1.53035 * 109.30904 * 185.57659 * 4 2 1 6 6 C 1.53040 * 109.53955 * 61.36672 * 5 4 2 7 7 H 1.09005 * 109.49698 * 58.61815 * 6 5 4 8 8 N 1.46506 * 109.50147 * 178.67886 * 6 5 4 9 9 C 1.34776 * 119.99938 * 204.93549 * 8 6 5 10 10 O 1.21560 * 120.00185 * 359.97438 * 9 8 6 11 11 C 1.47774 * 119.99479 * 180.02562 * 9 8 6 12 12 C 1.40662 * 119.70203 * 0.02562 * 11 9 8 13 13 C 1.35847 * 120.87535 * 180.02562 * 12 11 9 14 14 C 1.40392 * 119.84746 * 0.02562 * 13 12 11 15 15 C 1.40645 * 121.98330 * 179.97438 * 14 13 12 16 16 C 1.36216 * 118.73238 * 179.97438 * 15 14 13 17 17 N 1.32596 * 121.90197 * 359.97438 * 16 15 14 18 18 C 1.31239 * 122.73919 * 0.02562 * 17 16 15 19 19 C 1.40546 * 119.88590 * 359.97438 * 18 17 16 20 20 C 1.38567 * 119.70057 * 180.02562 * 11 9 8 21 21 C 1.53191 * 109.33926 * 298.65106 * 6 5 4 22 22 N 1.46921 * 109.58165 * 120.42151 * 2 1 3 23 23 C 1.36937 * 120.63592 * 353.40107 * 22 2 1 24 24 H 1.07995 * 120.00024 * 29.54543 * 23 22 2 25 25 C 1.38814 * 120.00110 * 209.54541 * 23 22 2 26 26 N 1.31624 * 119.99624 * 16.11023 * 25 23 22 27 27 Si 1.86797 * 120.00135 * 196.10481 * 25 23 22 28 28 H 1.48504 * 109.47025 * 94.02317 * 27 25 23 29 29 H 1.48495 * 109.47492 * 214.02120 * 27 25 23 30 30 H 1.48496 * 109.47253 * 334.02517 * 27 25 23 31 31 H 1.08996 * 109.47147 * 180.28488 * 1 2 3 32 32 H 1.08997 * 109.47075 * 300.28917 * 1 2 3 33 33 H 1.08998 * 109.46919 * 60.28914 * 1 2 3 34 34 H 1.09002 * 109.49884 * 65.62560 * 4 2 1 35 35 H 1.08992 * 109.49623 * 305.52758 * 4 2 1 36 36 H 1.08999 * 109.46432 * 301.34691 * 5 4 2 37 37 H 1.09001 * 109.44964 * 181.37514 * 5 4 2 38 38 H 0.97006 * 119.99323 * 24.93678 * 8 6 5 39 39 H 1.07994 * 119.55627 * 0.02562 * 12 11 9 40 40 H 1.08006 * 120.07479 * 180.02562 * 13 12 11 41 41 H 1.08006 * 120.63021 * 0.26920 * 15 14 13 42 42 H 1.08002 * 119.05035 * 179.97438 * 16 15 14 43 43 H 1.08000 * 120.05596 * 179.97438 * 18 17 16 44 44 H 1.08000 * 120.34089 * 0.02562 * 20 11 9 45 45 H 1.09001 * 109.58886 * 174.40677 * 21 6 5 46 46 H 1.09008 * 109.58398 * 294.83050 * 21 6 5 47 47 H 0.96998 * 119.99182 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8953 1.0270 0.0000 4 6 2.0436 -0.7279 -1.2463 5 6 3.5675 -0.8465 -1.1711 6 6 3.9569 -1.6657 0.0616 7 1 3.4988 -2.6530 0.0018 8 7 5.4143 -1.8054 0.1155 9 6 5.9677 -2.8483 0.7656 10 8 5.2576 -3.6728 1.3075 11 6 7.4377 -2.9889 0.8204 12 6 8.2534 -2.0303 0.1924 13 6 9.6073 -2.1364 0.2275 14 6 10.2065 -3.2150 0.8972 15 6 11.6030 -3.3691 0.9611 16 6 12.1136 -4.4408 1.6292 17 7 11.3330 -5.3366 2.2177 18 6 10.0231 -5.2576 2.1995 19 6 9.3950 -4.1893 1.5364 20 6 8.0001 -4.0638 1.4899 21 6 3.4649 -0.9492 1.3231 22 7 2.0225 -0.7009 1.1937 23 6 1.1536 -1.1157 2.1674 24 1 0.1384 -1.3781 1.9091 25 6 1.5778 -1.1988 3.4866 26 7 2.6849 -0.5935 3.8612 27 14 0.5773 -2.1696 4.7299 28 1 1.1094 -3.5530 4.8216 29 1 0.6697 -1.5147 6.0594 30 1 -0.8425 -2.2132 4.2972 31 1 -0.3633 -1.0276 0.0051 32 1 -0.3633 0.5183 0.8874 33 1 -0.3633 0.5093 -0.8926 34 1 1.7661 -0.1643 -2.1370 35 1 1.6031 -1.7237 -1.2933 36 1 4.0062 0.1488 -1.0990 37 1 3.9377 -1.3424 -2.0684 38 1 5.9809 -1.1472 -0.3167 39 1 7.7972 -1.1990 -0.3244 40 1 10.2212 -1.3926 -0.2588 41 1 12.2581 -2.6489 0.4934 42 1 13.1853 -4.5644 1.6811 43 1 9.4288 -6.0122 2.6932 44 1 7.3699 -4.7976 1.9703 45 1 3.6516 -1.5755 2.1954 46 1 3.9902 -0.0003 1.4327 47 1 2.9810 -0.6513 4.7831 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001071965355.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:12:59 Heat of formation + Delta-G solvation = 16.070561 kcal Electronic energy + Delta-G solvation = -28914.998543 eV Core-core repulsion = 25061.927643 eV Total energy + Delta-G solvation = -3853.070900 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -41.95760 -40.91136 -39.33610 -37.96050 -36.09688 -34.67836 -34.01560 -32.94142 -31.85894 -31.55350 -30.69147 -27.83057 -26.94623 -25.49534 -24.96091 -24.01145 -23.31546 -22.41048 -21.76601 -21.00810 -19.29966 -18.75951 -18.35129 -17.81386 -17.29926 -16.77833 -16.65956 -16.06847 -15.99848 -15.73909 -15.47729 -15.20404 -15.09692 -14.95138 -14.85488 -14.54114 -14.47226 -14.26386 -14.10567 -13.50215 -13.13450 -13.04125 -12.87172 -12.74667 -12.73691 -12.57671 -12.33847 -12.27695 -12.11426 -11.97387 -11.66634 -11.44118 -11.24957 -11.15282 -11.00944 -10.55117 -10.52282 -10.27840 -10.06945 -9.12077 -8.62582 -7.86285 -5.31962 -0.83045 -0.34029 0.75947 1.39622 1.44785 1.50472 1.51510 2.08226 2.34566 2.49910 3.04471 3.29883 3.42975 3.48314 3.58730 3.65988 3.72607 3.86765 3.95456 4.00687 4.04359 4.09797 4.25590 4.30945 4.39333 4.60531 4.63105 4.66490 4.71546 4.77644 4.79811 4.89102 4.90558 4.92201 5.01335 5.07368 5.18824 5.19035 5.27880 5.30818 5.33622 5.44212 5.55162 5.60216 5.61361 5.70469 5.71078 5.79172 6.40455 6.56314 6.93351 7.14893 7.24157 7.89780 8.38767 9.18795 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.014553 B = 0.002856 C = 0.002503 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1923.605062 B = 9802.684993 C =11184.582586 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.153 3.847 3 H 0.023 0.977 4 C -0.118 4.118 5 C -0.107 4.107 6 C 0.131 3.869 7 H 0.051 0.949 8 N -0.700 5.700 9 C 0.546 3.454 10 O -0.584 6.584 11 C -0.143 4.143 12 C -0.075 4.075 13 C -0.103 4.103 14 C -0.024 4.024 15 C -0.149 4.149 16 C 0.069 3.931 17 N -0.512 5.512 18 C 0.146 3.854 19 C -0.135 4.135 20 C -0.031 4.031 21 C 0.181 3.819 22 N -0.603 5.603 23 C -0.249 4.249 24 H 0.075 0.925 25 C -0.053 4.053 26 N -0.933 5.933 27 Si 0.954 3.046 28 H -0.298 1.298 29 H -0.294 1.294 30 H -0.261 1.261 31 H 0.045 0.955 32 H 0.037 0.963 33 H 0.079 0.921 34 H 0.097 0.903 35 H 0.051 0.949 36 H 0.076 0.924 37 H 0.087 0.913 38 H 0.413 0.587 39 H 0.158 0.842 40 H 0.178 0.822 41 H 0.178 0.822 42 H 0.182 0.818 43 H 0.177 0.823 44 H 0.134 0.866 45 H 0.039 0.961 46 H 0.000 1.000 47 H 0.244 0.756 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.646 -0.545 -14.188 22.649 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.048 3.952 3 H 0.041 0.959 4 C -0.158 4.158 5 C -0.145 4.145 6 C 0.025 3.975 7 H 0.070 0.930 8 N -0.351 5.351 9 C 0.335 3.665 10 O -0.465 6.465 11 C -0.146 4.146 12 C -0.094 4.094 13 C -0.120 4.120 14 C -0.029 4.029 15 C -0.168 4.168 16 C -0.073 4.073 17 N -0.221 5.221 18 C -0.025 4.025 19 C -0.137 4.137 20 C -0.052 4.052 21 C 0.053 3.947 22 N -0.327 5.327 23 C -0.380 4.380 24 H 0.092 0.908 25 C -0.249 4.249 26 N -0.579 5.579 27 Si 0.784 3.216 28 H -0.226 1.226 29 H -0.220 1.220 30 H -0.185 1.185 31 H 0.064 0.936 32 H 0.056 0.944 33 H 0.098 0.902 34 H 0.115 0.885 35 H 0.070 0.930 36 H 0.095 0.905 37 H 0.105 0.895 38 H 0.251 0.749 39 H 0.175 0.825 40 H 0.195 0.805 41 H 0.195 0.805 42 H 0.199 0.801 43 H 0.194 0.806 44 H 0.152 0.848 45 H 0.057 0.943 46 H 0.018 0.982 47 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges 17.693 -1.715 -13.287 22.192 hybrid contribution -0.902 0.264 1.016 1.384 sum 16.790 -1.451 -12.271 20.847 Atomic orbital electron populations 1.21737 0.94831 1.01102 1.01047 1.20817 0.94261 0.93433 0.86706 0.95899 1.21954 0.94597 1.00880 0.98324 1.21657 0.97109 1.00041 0.95715 1.21564 0.78881 0.99243 0.97847 0.93048 1.45788 1.07843 1.26579 1.54924 1.18774 0.88576 0.81288 0.77903 1.90793 1.64469 1.44271 1.46975 1.19951 0.91684 0.98927 1.04048 1.21276 0.94180 0.97343 0.96635 1.21260 0.94481 0.97491 0.98797 1.18685 0.94632 0.94294 0.95329 1.22303 0.93573 1.00288 1.00617 1.22815 1.01313 0.90132 0.93071 1.67520 1.06253 1.29232 1.19049 1.23541 0.90851 0.94971 0.93167 1.19086 0.93577 0.98601 1.02434 1.21461 0.93688 0.96118 0.93955 1.20747 0.83833 0.95261 0.94814 1.44321 1.02515 1.65544 1.20329 1.19478 0.95431 1.36421 0.86641 0.90791 1.25789 0.99170 1.00935 0.98961 1.70166 1.26112 1.45364 1.16271 0.85431 0.79321 0.78053 0.78841 1.22558 1.22031 1.18494 0.93630 0.94406 0.90215 0.88453 0.92995 0.90546 0.89454 0.74901 0.82495 0.80470 0.80493 0.80123 0.80613 0.84841 0.94271 0.98249 0.94720 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.63 7.95 71.98 0.57 -4.05 16 2 C 0.15 5.99 3.50 44.98 0.16 6.14 16 3 H 0.02 0.92 8.14 -2.39 -0.02 0.90 16 4 C -0.12 -3.57 5.37 30.67 0.16 -3.40 16 5 C -0.11 -3.03 5.35 30.62 0.16 -2.87 16 6 C 0.13 5.01 2.60 45.07 0.12 5.13 16 7 H 0.05 2.32 7.58 -2.38 -0.02 2.30 16 8 N -0.70 -22.20 5.03 -445.09 -2.24 -24.44 16 9 C 0.55 19.87 7.73 86.77 0.67 20.54 16 10 O -0.58 -27.68 15.96 -3.90 -0.06 -27.74 16 11 C -0.14 -3.98 5.87 -20.08 -0.12 -4.10 16 12 C -0.07 -1.41 9.44 22.31 0.21 -1.20 16 13 C -0.10 -1.54 9.77 22.24 0.22 -1.32 16 14 C -0.02 -0.45 5.75 -21.24 -0.12 -0.57 16 15 C -0.15 -2.02 9.87 22.39 0.22 -1.80 16 16 C 0.07 1.10 11.07 84.11 0.93 2.03 16 17 N -0.51 -11.08 10.30 -195.41 -2.01 -13.09 16 18 C 0.15 3.19 11.05 85.34 0.94 4.13 16 19 C -0.13 -3.13 5.74 -21.33 -0.12 -3.26 16 20 C -0.03 -0.86 9.37 22.81 0.21 -0.64 16 21 C 0.18 9.01 4.86 86.36 0.42 9.43 16 22 N -0.60 -30.44 2.99 -675.20 -2.02 -32.45 16 23 C -0.25 -14.01 8.58 84.03 0.72 -13.29 16 24 H 0.07 4.01 6.22 -2.91 -0.02 4.00 16 25 C -0.05 -3.14 4.92 84.86 0.42 -2.73 16 26 N -0.93 -58.26 11.25 21.65 0.24 -58.01 16 27 Si 0.95 47.96 29.58 68.60 2.03 49.99 16 28 H -0.30 -15.37 7.11 99.48 0.71 -14.66 16 29 H -0.29 -14.69 7.11 99.48 0.71 -13.99 16 30 H -0.26 -12.18 7.11 99.48 0.71 -11.47 16 31 H 0.04 1.68 7.40 -2.39 -0.02 1.66 16 32 H 0.04 1.50 7.66 -2.39 -0.02 1.48 16 33 H 0.08 2.16 8.14 -2.39 -0.02 2.15 16 34 H 0.10 2.20 8.14 -2.39 -0.02 2.18 16 35 H 0.05 1.69 8.14 -2.39 -0.02 1.67 16 36 H 0.08 1.95 8.14 -2.39 -0.02 1.93 16 37 H 0.09 1.94 8.14 -2.39 -0.02 1.92 16 38 H 0.41 9.25 6.58 -92.70 -0.61 8.64 16 39 H 0.16 2.00 6.34 -2.91 -0.02 1.98 16 40 H 0.18 1.17 8.06 -2.91 -0.02 1.15 16 41 H 0.18 1.00 8.06 -2.91 -0.02 0.98 16 42 H 0.18 1.69 8.06 -2.91 -0.02 1.67 16 43 H 0.18 3.19 8.06 -2.91 -0.02 3.17 16 44 H 0.13 3.92 7.61 -2.91 -0.02 3.90 16 45 H 0.04 2.37 6.15 -2.39 -0.01 2.36 16 46 H 0.00 -0.03 8.14 -2.38 -0.02 -0.05 16 47 H 0.24 14.97 8.31 -92.71 -0.77 14.20 16 Total: -1.00 -81.58 378.31 2.10 -79.48 By element: Atomic # 1 Polarization: 17.69 SS G_CDS: 0.38 Total: 18.07 kcal Atomic # 6 Polarization: 2.41 SS G_CDS: 5.78 Total: 8.19 kcal Atomic # 7 Polarization: -121.97 SS G_CDS: -6.02 Total: -127.99 kcal Atomic # 8 Polarization: -27.68 SS G_CDS: -0.06 Total: -27.74 kcal Atomic # 14 Polarization: 47.96 SS G_CDS: 2.03 Total: 49.99 kcal Total: -81.58 2.10 -79.48 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071965355.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.548 kcal (2) G-P(sol) polarization free energy of solvation -81.582 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.966 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.105 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.477 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.071 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds