Wall clock time and date at job start Tue Mar 31 2020 22:13:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 H 1.09001 * 109.70256 * 2 1 4 4 C 1.53193 * 109.58943 * 239.64536 * 2 1 3 5 5 C 1.53037 * 109.31678 * 185.58105 * 4 2 1 6 6 C 1.53035 * 109.54175 * 61.35881 * 5 4 2 7 7 H 1.09003 * 109.52789 * 178.66814 * 6 5 4 8 8 N 1.46505 * 109.49427 * 58.59260 * 6 5 4 9 9 C 1.34775 * 119.99948 * 155.16263 * 8 6 5 10 10 O 1.21544 * 120.00187 * 359.97438 * 9 8 6 11 11 C 1.47888 * 119.99982 * 179.97438 * 9 8 6 12 12 C 1.40597 * 119.72762 * 0.02562 * 11 9 8 13 13 C 1.35854 * 120.94907 * 179.76229 * 12 11 9 14 14 C 1.40493 * 119.88016 * 0.46494 * 13 12 11 15 15 C 1.40480 * 121.83394 * 179.79765 * 14 13 12 16 16 N 1.31221 * 119.93838 * 179.72846 * 15 14 13 17 17 C 1.32554 * 122.79891 * 359.97438 * 16 15 14 18 18 C 1.36214 * 121.85032 * 359.97438 * 17 16 15 19 19 C 1.40763 * 118.68059 * 0.02562 * 18 17 16 20 20 C 1.38525 * 119.73246 * 179.97438 * 11 9 8 21 21 C 1.53191 * 109.31378 * 298.64180 * 6 5 4 22 22 N 1.46921 * 108.77871 * 54.63341 * 21 6 5 23 23 C 1.36932 * 120.63469 * 126.36662 * 22 21 6 24 24 H 1.08001 * 120.00243 * 221.18406 * 23 22 21 25 25 C 1.38818 * 119.99817 * 41.18808 * 23 22 21 26 26 N 1.31621 * 119.99667 * 214.84006 * 25 23 22 27 27 Si 1.86801 * 119.99991 * 34.83247 * 25 23 22 28 28 H 1.48506 * 109.46669 * 84.63464 * 27 25 23 29 29 H 1.48498 * 109.46927 * 204.63025 * 27 25 23 30 30 H 1.48494 * 109.47328 * 324.63378 * 27 25 23 31 31 H 1.08999 * 109.47620 * 299.64076 * 1 2 3 32 32 H 1.08998 * 109.47027 * 59.64655 * 1 2 3 33 33 H 1.09000 * 109.47116 * 179.64392 * 1 2 3 34 34 H 1.09004 * 109.49806 * 305.52984 * 4 2 1 35 35 H 1.08996 * 109.49681 * 65.59356 * 4 2 1 36 36 H 1.09009 * 109.45960 * 301.34296 * 5 4 2 37 37 H 1.08999 * 109.46442 * 181.38722 * 5 4 2 38 38 H 0.97000 * 119.99739 * 335.15496 * 8 6 5 39 39 H 1.08003 * 119.52876 * 359.97438 * 12 11 9 40 40 H 1.08006 * 120.05498 * 180.02562 * 13 12 11 41 41 H 1.08002 * 120.03585 * 359.70326 * 15 14 13 42 42 H 1.08004 * 119.07261 * 180.02562 * 17 16 15 43 43 H 1.08003 * 120.65959 * 179.97438 * 18 17 16 44 44 H 1.08005 * 120.36283 * 0.02842 * 20 11 9 45 45 H 1.09007 * 109.58627 * 174.42156 * 21 6 5 46 46 H 1.08996 * 109.58312 * 294.69723 * 21 6 5 47 47 H 0.97006 * 119.99478 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8974 1.0262 0.0000 4 6 2.0435 -0.7294 -1.2454 5 6 3.5674 -0.8480 -1.1701 6 6 3.9569 -1.6657 0.0635 7 1 5.0411 -1.7701 0.1040 8 7 3.3405 -2.9924 -0.0148 9 6 3.8953 -4.0328 0.6382 10 8 4.9071 -3.8704 1.2917 11 6 3.2728 -5.3720 0.5596 12 6 2.1026 -5.5535 -0.1984 13 6 1.5128 -6.7738 -0.2915 14 6 2.0684 -7.8731 0.3841 15 6 1.4903 -9.1518 0.3197 16 7 2.0437 -10.1538 0.9614 17 6 3.1465 -10.0218 1.6849 18 6 3.7847 -8.8250 1.8107 19 6 3.2508 -7.7020 1.1508 20 6 3.8479 -6.4374 1.2326 21 6 3.4650 -0.9469 1.3237 22 7 2.0225 -0.6996 1.1945 23 6 1.1536 -1.1135 2.1685 24 1 0.2056 -1.5528 1.8953 25 6 1.4913 -0.9684 3.5072 26 7 1.1095 -1.8729 4.3839 27 14 2.4875 0.5103 4.0642 28 1 1.5764 1.6572 4.3087 29 1 3.2104 0.1764 5.3176 30 1 3.4675 0.8728 3.0091 31 1 -0.3634 0.5082 0.8931 32 1 -0.3633 0.5193 -0.8868 33 1 -0.3633 -1.0276 -0.0064 34 1 1.6029 -1.7253 -1.2914 35 1 1.7655 -0.1671 -2.1368 36 1 4.0062 0.1474 -1.0993 37 1 3.9378 -1.3448 -2.0668 38 1 2.5331 -3.1221 -0.5366 39 1 1.6683 -4.7115 -0.7169 40 1 0.6144 -6.8970 -0.8782 41 1 0.5911 -9.3101 -0.2571 42 1 3.5508 -10.8877 2.1882 43 1 4.6820 -8.7392 2.4056 44 1 4.7470 -6.2948 1.8138 45 1 3.6518 -1.5717 2.1972 46 1 3.9921 0.0008 1.4330 47 1 1.3458 -1.7717 5.3192 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001071967384.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:13:19 Heat of formation + Delta-G solvation = 42.216905 kcal Electronic energy + Delta-G solvation = -29764.391683 eV Core-core repulsion = 25912.454574 eV Total energy + Delta-G solvation = -3851.937109 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -40.93290 -39.68435 -37.98683 -36.80351 -34.32120 -33.09144 -32.72512 -31.77355 -30.73486 -30.31429 -29.68125 -26.52892 -25.15041 -24.56230 -23.84414 -22.52585 -22.33750 -21.16467 -20.47124 -19.02131 -18.35905 -17.68275 -16.73692 -16.42055 -16.18221 -15.38056 -15.23430 -15.00536 -14.58211 -14.48449 -14.17046 -13.90119 -13.76198 -13.69935 -13.60818 -13.38862 -13.04502 -12.82484 -12.59993 -12.42213 -12.20452 -11.97934 -11.75903 -11.42626 -11.24893 -11.14952 -10.96828 -10.64454 -10.49851 -10.32026 -10.29330 -9.95945 -9.86013 -9.72937 -9.54269 -9.45719 -9.13300 -8.62033 -8.28993 -8.15656 -6.69650 -6.07750 -3.38080 0.18058 0.65266 1.79937 2.61018 3.41114 3.43869 3.52270 3.56247 3.62186 4.07839 4.27867 4.43238 4.58787 4.63660 4.68231 4.85481 4.88541 4.95775 5.11574 5.12631 5.18828 5.28072 5.29901 5.42196 5.48298 5.60143 5.64712 5.79330 5.85698 5.93398 5.96502 6.00357 6.13429 6.21276 6.24096 6.26201 6.29934 6.33067 6.43980 6.48197 6.50603 6.54372 6.66898 6.89600 6.97254 7.02173 7.07010 7.83206 7.91444 8.03600 8.41156 8.60022 8.99534 9.72810 10.20878 11.07426 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.013202 B = 0.003523 C = 0.003287 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2120.394516 B = 7946.122812 C = 8517.174735 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.161 3.839 3 H 0.027 0.973 4 C -0.130 4.130 5 C -0.119 4.119 6 C 0.125 3.875 7 H 0.080 0.920 8 N -0.692 5.692 9 C 0.558 3.442 10 O -0.543 6.543 11 C -0.098 4.098 12 C -0.085 4.085 13 C -0.094 4.094 14 C -0.098 4.098 15 C 0.142 3.858 16 N -0.488 5.488 17 C 0.067 3.933 18 C -0.143 4.143 19 C -0.033 4.033 20 C -0.047 4.047 21 C 0.133 3.867 22 N -0.590 5.590 23 C -0.275 4.275 24 H 0.075 0.925 25 C 0.053 3.947 26 N -0.877 5.877 27 Si 0.842 3.158 28 H -0.289 1.289 29 H -0.298 1.298 30 H -0.261 1.261 31 H 0.063 0.937 32 H 0.037 0.963 33 H 0.054 0.946 34 H 0.056 0.944 35 H 0.057 0.943 36 H 0.072 0.928 37 H 0.056 0.944 38 H 0.397 0.603 39 H 0.130 0.870 40 H 0.138 0.862 41 H 0.164 0.836 42 H 0.153 0.847 43 H 0.140 0.860 44 H 0.145 0.855 45 H 0.073 0.927 46 H 0.032 0.968 47 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.615 -8.987 -13.030 16.043 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.056 3.944 3 H 0.044 0.956 4 C -0.170 4.170 5 C -0.157 4.157 6 C 0.019 3.981 7 H 0.098 0.902 8 N -0.343 5.343 9 C 0.344 3.656 10 O -0.422 6.422 11 C -0.102 4.102 12 C -0.103 4.103 13 C -0.114 4.114 14 C -0.100 4.100 15 C -0.029 4.029 16 N -0.196 5.196 17 C -0.075 4.075 18 C -0.162 4.162 19 C -0.038 4.038 20 C -0.066 4.066 21 C 0.006 3.994 22 N -0.314 5.314 23 C -0.403 4.403 24 H 0.092 0.908 25 C -0.150 4.150 26 N -0.515 5.515 27 Si 0.669 3.331 28 H -0.216 1.216 29 H -0.225 1.225 30 H -0.186 1.186 31 H 0.082 0.918 32 H 0.056 0.944 33 H 0.073 0.927 34 H 0.075 0.925 35 H 0.075 0.925 36 H 0.091 0.909 37 H 0.075 0.925 38 H 0.234 0.766 39 H 0.148 0.852 40 H 0.156 0.844 41 H 0.181 0.819 42 H 0.170 0.830 43 H 0.158 0.842 44 H 0.163 0.837 45 H 0.091 0.909 46 H 0.050 0.950 47 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 3.034 -9.795 -12.331 16.037 hybrid contribution 0.463 1.788 0.510 1.916 sum 3.497 -8.006 -11.821 14.699 Atomic orbital electron populations 1.21747 0.95407 1.01615 1.00248 1.20598 0.93545 0.93397 0.86907 0.95574 1.22048 0.94899 1.00875 0.99135 1.21696 0.97219 1.00131 0.96684 1.21586 0.97108 0.81845 0.97525 0.90205 1.45733 1.29455 1.08309 1.50768 1.18074 0.84010 0.84082 0.79431 1.90738 1.25365 1.85044 1.41062 1.20120 0.96440 0.94225 0.99415 1.20992 0.94215 0.97741 0.97387 1.20840 0.99822 0.91609 0.99098 1.19126 0.95993 0.95985 0.98916 1.23213 0.97948 0.86953 0.94829 1.67369 1.10567 1.34276 1.07343 1.22138 0.91772 0.97113 0.96520 1.21990 1.01335 0.92940 0.99978 1.18131 0.94647 0.94168 0.96861 1.21407 0.99152 0.90035 0.96053 1.21702 0.85395 0.96702 0.95570 1.44303 1.01987 1.65106 1.20050 1.18475 1.02125 1.35418 0.84236 0.90779 1.25575 0.96612 0.96788 0.96017 1.70081 1.46905 1.31199 1.03303 0.87383 0.80701 0.86850 0.78174 1.21631 1.22461 1.18637 0.91827 0.94415 0.92696 0.92503 0.92481 0.90943 0.92508 0.76635 0.85191 0.84430 0.81894 0.83008 0.84223 0.83691 0.90883 0.95000 0.92778 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.27 8.07 37.15 0.30 -1.97 16 2 C 0.16 2.89 3.50 -67.60 -0.24 2.65 16 3 H 0.03 0.48 8.14 -51.93 -0.42 0.06 16 4 C -0.13 -1.84 5.21 -26.61 -0.14 -1.98 16 5 C -0.12 -1.64 5.58 -26.69 -0.15 -1.79 16 6 C 0.13 2.14 2.81 -67.81 -0.19 1.95 16 7 H 0.08 1.38 7.58 -51.93 -0.39 0.99 16 8 N -0.69 -11.51 4.87 -54.62 -0.27 -11.77 16 9 C 0.56 10.18 7.73 -12.31 -0.10 10.09 16 10 O -0.54 -11.61 15.97 5.33 0.09 -11.53 16 11 C -0.10 -1.53 5.87 -104.95 -0.62 -2.15 16 12 C -0.08 -1.10 9.44 -39.55 -0.37 -1.47 16 13 C -0.09 -1.05 9.77 -39.59 -0.39 -1.44 16 14 C -0.10 -1.21 5.75 -106.78 -0.61 -1.83 16 15 C 0.14 1.58 11.04 -16.97 -0.19 1.39 16 16 N -0.49 -5.99 10.29 -13.15 -0.14 -6.13 16 17 C 0.07 0.75 11.07 -17.97 -0.20 0.55 16 18 C -0.14 -1.64 9.88 -39.36 -0.39 -2.03 16 19 C -0.03 -0.44 5.74 -106.83 -0.61 -1.06 16 20 C -0.05 -0.71 9.38 -38.78 -0.36 -1.07 16 21 C 0.13 2.84 4.19 -3.71 -0.02 2.82 16 22 N -0.59 -12.90 2.38 -164.78 -0.39 -13.30 16 23 C -0.27 -7.15 8.42 -15.06 -0.13 -7.27 16 24 H 0.07 2.06 6.83 -52.49 -0.36 1.70 16 25 C 0.05 1.49 4.82 -17.43 -0.08 1.41 16 26 N -0.88 -26.22 13.97 55.49 0.78 -25.44 16 27 Si 0.84 21.50 27.39 -169.99 -4.66 16.85 16 28 H -0.29 -7.46 7.11 56.52 0.40 -7.06 16 29 H -0.30 -7.84 7.11 56.52 0.40 -7.44 16 30 H -0.26 -6.40 5.24 56.52 0.30 -6.11 16 31 H 0.06 1.22 7.68 -51.93 -0.40 0.82 16 32 H 0.04 0.53 8.14 -51.93 -0.42 0.10 16 33 H 0.05 0.97 7.42 -51.93 -0.39 0.58 16 34 H 0.06 0.79 6.40 -51.93 -0.33 0.46 16 35 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 36 H 0.07 0.97 8.14 -51.92 -0.42 0.54 16 37 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 38 H 0.40 5.83 4.75 -40.82 -0.19 5.64 16 39 H 0.13 1.45 6.34 -52.48 -0.33 1.12 16 40 H 0.14 1.08 8.06 -52.48 -0.42 0.66 16 41 H 0.16 1.26 8.06 -52.49 -0.42 0.84 16 42 H 0.15 1.25 8.06 -52.48 -0.42 0.83 16 43 H 0.14 1.28 8.06 -52.48 -0.42 0.85 16 44 H 0.15 2.13 7.62 -52.48 -0.40 1.73 16 45 H 0.07 1.84 7.02 -51.92 -0.36 1.48 16 46 H 0.03 0.69 6.71 -51.93 -0.35 0.34 16 47 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 LS Contribution 372.19 15.07 5.61 5.61 Total: -1.00 -32.99 372.19 -10.01 -43.00 By element: Atomic # 1 Polarization: 12.45 SS G_CDS: -6.55 Total: 5.89 kcal Atomic # 6 Polarization: 1.29 SS G_CDS: -4.48 Total: -3.19 kcal Atomic # 7 Polarization: -56.62 SS G_CDS: -0.02 Total: -56.64 kcal Atomic # 8 Polarization: -11.61 SS G_CDS: 0.09 Total: -11.53 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -4.66 Total: 16.85 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -32.99 -10.01 -43.00 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071967384.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.219 kcal (2) G-P(sol) polarization free energy of solvation -32.988 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.230 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.013 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.002 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.217 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds