Wall clock time and date at job start Tue Mar 31 2020 22:13:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 H 1.09001 * 109.70256 * 2 1 4 4 C 1.53193 * 109.58943 * 239.64536 * 2 1 3 5 5 C 1.53037 * 109.31678 * 185.58105 * 4 2 1 6 6 C 1.53035 * 109.54175 * 61.35881 * 5 4 2 7 7 H 1.09003 * 109.52789 * 178.66814 * 6 5 4 8 8 N 1.46505 * 109.49427 * 58.59260 * 6 5 4 9 9 C 1.34775 * 119.99948 * 155.16263 * 8 6 5 10 10 O 1.21544 * 120.00187 * 359.97438 * 9 8 6 11 11 C 1.47888 * 119.99982 * 179.97438 * 9 8 6 12 12 C 1.40597 * 119.72762 * 0.02562 * 11 9 8 13 13 C 1.35854 * 120.94907 * 179.76229 * 12 11 9 14 14 C 1.40493 * 119.88016 * 0.46494 * 13 12 11 15 15 C 1.40480 * 121.83394 * 179.79765 * 14 13 12 16 16 N 1.31221 * 119.93838 * 179.72846 * 15 14 13 17 17 C 1.32554 * 122.79891 * 359.97438 * 16 15 14 18 18 C 1.36214 * 121.85032 * 359.97438 * 17 16 15 19 19 C 1.40763 * 118.68059 * 0.02562 * 18 17 16 20 20 C 1.38525 * 119.73246 * 179.97438 * 11 9 8 21 21 C 1.53191 * 109.31378 * 298.64180 * 6 5 4 22 22 N 1.46921 * 108.77871 * 54.63341 * 21 6 5 23 23 C 1.36932 * 120.63469 * 126.36662 * 22 21 6 24 24 H 1.08001 * 120.00243 * 221.18406 * 23 22 21 25 25 C 1.38818 * 119.99817 * 41.18808 * 23 22 21 26 26 N 1.31621 * 119.99667 * 214.84006 * 25 23 22 27 27 Si 1.86801 * 119.99991 * 34.83247 * 25 23 22 28 28 H 1.48506 * 109.46669 * 84.63464 * 27 25 23 29 29 H 1.48498 * 109.46927 * 204.63025 * 27 25 23 30 30 H 1.48494 * 109.47328 * 324.63378 * 27 25 23 31 31 H 1.08999 * 109.47620 * 299.64076 * 1 2 3 32 32 H 1.08998 * 109.47027 * 59.64655 * 1 2 3 33 33 H 1.09000 * 109.47116 * 179.64392 * 1 2 3 34 34 H 1.09004 * 109.49806 * 305.52984 * 4 2 1 35 35 H 1.08996 * 109.49681 * 65.59356 * 4 2 1 36 36 H 1.09009 * 109.45960 * 301.34296 * 5 4 2 37 37 H 1.08999 * 109.46442 * 181.38722 * 5 4 2 38 38 H 0.97000 * 119.99739 * 335.15496 * 8 6 5 39 39 H 1.08003 * 119.52876 * 359.97438 * 12 11 9 40 40 H 1.08006 * 120.05498 * 180.02562 * 13 12 11 41 41 H 1.08002 * 120.03585 * 359.70326 * 15 14 13 42 42 H 1.08004 * 119.07261 * 180.02562 * 17 16 15 43 43 H 1.08003 * 120.65959 * 179.97438 * 18 17 16 44 44 H 1.08005 * 120.36283 * 0.02842 * 20 11 9 45 45 H 1.09007 * 109.58627 * 174.42156 * 21 6 5 46 46 H 1.08996 * 109.58312 * 294.69723 * 21 6 5 47 47 H 0.97006 * 119.99478 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8974 1.0262 0.0000 4 6 2.0435 -0.7294 -1.2454 5 6 3.5674 -0.8480 -1.1701 6 6 3.9569 -1.6657 0.0635 7 1 5.0411 -1.7701 0.1040 8 7 3.3405 -2.9924 -0.0148 9 6 3.8953 -4.0328 0.6382 10 8 4.9071 -3.8704 1.2917 11 6 3.2728 -5.3720 0.5596 12 6 2.1026 -5.5535 -0.1984 13 6 1.5128 -6.7738 -0.2915 14 6 2.0684 -7.8731 0.3841 15 6 1.4903 -9.1518 0.3197 16 7 2.0437 -10.1538 0.9614 17 6 3.1465 -10.0218 1.6849 18 6 3.7847 -8.8250 1.8107 19 6 3.2508 -7.7020 1.1508 20 6 3.8479 -6.4374 1.2326 21 6 3.4650 -0.9469 1.3237 22 7 2.0225 -0.6996 1.1945 23 6 1.1536 -1.1135 2.1685 24 1 0.2056 -1.5528 1.8953 25 6 1.4913 -0.9684 3.5072 26 7 1.1095 -1.8729 4.3839 27 14 2.4875 0.5103 4.0642 28 1 1.5764 1.6572 4.3087 29 1 3.2104 0.1764 5.3176 30 1 3.4675 0.8728 3.0091 31 1 -0.3634 0.5082 0.8931 32 1 -0.3633 0.5193 -0.8868 33 1 -0.3633 -1.0276 -0.0064 34 1 1.6029 -1.7253 -1.2914 35 1 1.7655 -0.1671 -2.1368 36 1 4.0062 0.1474 -1.0993 37 1 3.9378 -1.3448 -2.0668 38 1 2.5331 -3.1221 -0.5366 39 1 1.6683 -4.7115 -0.7169 40 1 0.6144 -6.8970 -0.8782 41 1 0.5911 -9.3101 -0.2571 42 1 3.5508 -10.8877 2.1882 43 1 4.6820 -8.7392 2.4056 44 1 4.7470 -6.2948 1.8138 45 1 3.6518 -1.5717 2.1972 46 1 3.9921 0.0008 1.4330 47 1 1.3458 -1.7717 5.3192 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001071967384.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:13:18 Heat of formation + Delta-G solvation = 21.462390 kcal Electronic energy + Delta-G solvation = -29765.291667 eV Core-core repulsion = 25912.454574 eV Total energy + Delta-G solvation = -3852.837092 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -41.93913 -41.00768 -39.38631 -37.91051 -35.88876 -34.51855 -33.99841 -32.97712 -32.51577 -31.54766 -30.62293 -28.01497 -26.76606 -25.80392 -24.78269 -24.10066 -23.34193 -22.38278 -21.95646 -20.55943 -19.52529 -18.71310 -18.32778 -17.63135 -17.34933 -16.96009 -16.69120 -16.16452 -15.96359 -15.88843 -15.44387 -15.22315 -15.09305 -14.91035 -14.70063 -14.60909 -14.42917 -14.35379 -13.88097 -13.76744 -13.46837 -13.39567 -13.04300 -12.93326 -12.72197 -12.57870 -12.47925 -12.16136 -12.09795 -11.80660 -11.60432 -11.37342 -11.25000 -11.16110 -11.04862 -10.52848 -10.51078 -10.23201 -9.93115 -9.10599 -8.55257 -8.24990 -5.47488 -0.81143 -0.32409 0.82493 1.32385 1.39194 1.45013 1.51855 2.16263 2.42077 2.47333 2.95685 3.07365 3.44606 3.48782 3.53446 3.58367 3.76350 3.84596 3.95340 4.01551 4.06068 4.09820 4.15724 4.29026 4.37851 4.58868 4.61865 4.65226 4.67224 4.74675 4.75543 4.84546 4.93583 5.00965 5.02809 5.03707 5.11033 5.13939 5.22584 5.24751 5.28271 5.30731 5.57720 5.58274 5.63089 5.67595 5.73237 5.95397 6.29804 6.57954 6.95585 7.05294 7.23327 7.70727 8.20889 8.94637 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.013202 B = 0.003523 C = 0.003287 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2120.394516 B = 7946.122812 C = 8517.174735 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C 0.151 3.849 3 H 0.032 0.968 4 C -0.121 4.121 5 C -0.110 4.110 6 C 0.129 3.871 7 H 0.076 0.924 8 N -0.683 5.683 9 C 0.549 3.451 10 O -0.587 6.587 11 C -0.118 4.118 12 C -0.100 4.100 13 C -0.075 4.075 14 C -0.111 4.111 15 C 0.149 3.851 16 N -0.506 5.506 17 C 0.068 3.932 18 C -0.155 4.155 19 C -0.049 4.049 20 C -0.065 4.065 21 C 0.135 3.865 22 N -0.599 5.599 23 C -0.239 4.239 24 H 0.053 0.947 25 C -0.003 4.003 26 N -0.927 5.927 27 Si 0.888 3.112 28 H -0.290 1.290 29 H -0.314 1.314 30 H -0.246 1.246 31 H 0.033 0.967 32 H 0.077 0.923 33 H 0.045 0.955 34 H 0.061 0.939 35 H 0.095 0.905 36 H 0.083 0.917 37 H 0.089 0.911 38 H 0.408 0.592 39 H 0.148 0.852 40 H 0.181 0.819 41 H 0.201 0.799 42 H 0.179 0.821 43 H 0.154 0.846 44 H 0.131 0.869 45 H 0.023 0.977 46 H 0.032 0.968 47 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.598 -9.223 -16.862 19.286 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.047 3.953 3 H 0.050 0.950 4 C -0.160 4.160 5 C -0.148 4.148 6 C 0.023 3.977 7 H 0.094 0.906 8 N -0.334 5.334 9 C 0.337 3.663 10 O -0.469 6.469 11 C -0.123 4.123 12 C -0.118 4.118 13 C -0.094 4.094 14 C -0.114 4.114 15 C -0.023 4.023 16 N -0.214 5.214 17 C -0.074 4.074 18 C -0.175 4.175 19 C -0.054 4.054 20 C -0.084 4.084 21 C 0.008 3.992 22 N -0.324 5.324 23 C -0.369 4.369 24 H 0.071 0.929 25 C -0.201 4.201 26 N -0.570 5.570 27 Si 0.716 3.284 28 H -0.217 1.217 29 H -0.242 1.242 30 H -0.171 1.171 31 H 0.052 0.948 32 H 0.096 0.904 33 H 0.064 0.936 34 H 0.079 0.921 35 H 0.114 0.886 36 H 0.102 0.898 37 H 0.108 0.892 38 H 0.247 0.753 39 H 0.165 0.835 40 H 0.198 0.802 41 H 0.218 0.782 42 H 0.196 0.804 43 H 0.172 0.828 44 H 0.149 0.851 45 H 0.042 0.958 46 H 0.049 0.951 47 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 2.014 -9.994 -16.232 19.168 hybrid contribution 0.738 1.772 1.631 2.519 sum 2.752 -8.222 -14.601 16.981 Atomic orbital electron populations 1.21693 0.94839 1.01188 1.00749 1.20920 0.94150 0.93747 0.86498 0.95036 1.21967 0.94763 1.01119 0.98147 1.21693 0.97182 1.00246 0.95682 1.21484 0.96887 0.82086 0.97222 0.90586 1.45685 1.29643 1.07808 1.50257 1.18621 0.83586 0.85443 0.78668 1.90699 1.27374 1.85905 1.42940 1.20112 0.98018 0.92865 1.01271 1.21156 0.93586 0.99319 0.97780 1.21290 1.00188 0.90200 0.97723 1.19447 0.95744 0.97224 0.98949 1.23803 0.98482 0.85895 0.94088 1.67467 1.11103 1.34816 1.07985 1.22586 0.91264 0.97705 0.95819 1.22205 1.02193 0.92710 1.00385 1.18345 0.95495 0.93914 0.97668 1.21409 0.99302 0.91057 0.96622 1.21567 0.85296 0.96239 0.96098 1.44424 1.01619 1.65879 1.20454 1.18426 1.01271 1.32409 0.84764 0.92902 1.26054 0.98644 0.98719 0.96693 1.70177 1.50432 1.33114 1.03268 0.86621 0.79758 0.84490 0.77521 1.21726 1.24165 1.17060 0.94826 0.90378 0.93625 0.92075 0.88632 0.89834 0.89238 0.75326 0.83480 0.80195 0.78239 0.80417 0.82816 0.85067 0.95789 0.95077 0.93491 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.04 8.07 71.98 0.58 -3.46 16 2 C 0.15 4.99 3.50 44.97 0.16 5.15 16 3 H 0.03 1.05 8.14 -2.39 -0.02 1.03 16 4 C -0.12 -2.86 5.21 30.67 0.16 -2.70 16 5 C -0.11 -2.59 5.58 30.62 0.17 -2.42 16 6 C 0.13 4.29 2.81 45.07 0.13 4.41 16 7 H 0.08 2.61 7.58 -2.39 -0.02 2.59 16 8 N -0.68 -22.34 4.87 -445.00 -2.16 -24.51 16 9 C 0.55 20.76 7.73 86.80 0.67 21.43 16 10 O -0.59 -26.67 15.97 -3.85 -0.06 -26.73 16 11 C -0.12 -3.81 5.87 -20.08 -0.12 -3.93 16 12 C -0.10 -2.46 9.44 22.29 0.21 -2.25 16 13 C -0.07 -1.48 9.77 22.27 0.22 -1.26 16 14 C -0.11 -2.56 5.75 -21.26 -0.12 -2.68 16 15 C 0.15 2.88 11.04 85.33 0.94 3.82 16 16 N -0.51 -11.31 10.29 -195.51 -2.01 -13.32 16 17 C 0.07 1.42 11.07 84.11 0.93 2.35 16 18 C -0.16 -3.53 9.88 22.42 0.22 -3.31 16 19 C -0.05 -1.33 5.74 -21.29 -0.12 -1.45 16 20 C -0.06 -2.03 9.38 22.79 0.21 -1.82 16 21 C 0.13 5.77 4.19 86.36 0.36 6.13 16 22 N -0.60 -25.86 2.38 -675.24 -1.61 -27.47 16 23 C -0.24 -12.68 8.42 84.04 0.71 -11.97 16 24 H 0.05 3.02 6.83 -2.91 -0.02 3.00 16 25 C 0.00 -0.16 4.82 84.86 0.41 0.25 16 26 N -0.93 -58.25 13.97 21.65 0.30 -57.94 16 27 Si 0.89 45.97 27.39 68.60 1.88 47.85 16 28 H -0.29 -14.86 7.11 99.48 0.71 -14.15 16 29 H -0.31 -16.95 7.11 99.48 0.71 -16.25 16 30 H -0.25 -11.94 5.24 99.48 0.52 -11.42 16 31 H 0.03 1.24 7.68 -2.39 -0.02 1.23 16 32 H 0.08 1.85 8.14 -2.39 -0.02 1.83 16 33 H 0.04 1.51 7.42 -2.39 -0.02 1.50 16 34 H 0.06 1.42 6.40 -2.38 -0.02 1.40 16 35 H 0.10 1.66 8.14 -2.39 -0.02 1.64 16 36 H 0.08 1.85 8.14 -2.38 -0.02 1.83 16 37 H 0.09 1.64 8.14 -2.39 -0.02 1.62 16 38 H 0.41 11.24 4.75 -92.71 -0.44 10.80 16 39 H 0.15 2.96 6.34 -2.91 -0.02 2.94 16 40 H 0.18 1.95 8.06 -2.91 -0.02 1.93 16 41 H 0.20 2.21 8.06 -2.91 -0.02 2.19 16 42 H 0.18 2.59 8.06 -2.91 -0.02 2.56 16 43 H 0.15 2.87 8.06 -2.91 -0.02 2.85 16 44 H 0.13 4.29 7.62 -2.91 -0.02 4.27 16 45 H 0.02 1.25 7.02 -2.38 -0.02 1.23 16 46 H 0.03 1.33 6.71 -2.39 -0.02 1.32 16 47 H 0.26 15.66 8.31 -92.70 -0.77 14.89 16 Total: -1.00 -77.43 372.19 2.42 -75.00 By element: Atomic # 1 Polarization: 20.45 SS G_CDS: 0.37 Total: 20.82 kcal Atomic # 6 Polarization: 0.58 SS G_CDS: 5.72 Total: 6.30 kcal Atomic # 7 Polarization: -117.76 SS G_CDS: -5.49 Total: -123.24 kcal Atomic # 8 Polarization: -26.67 SS G_CDS: -0.06 Total: -26.73 kcal Atomic # 14 Polarization: 45.97 SS G_CDS: 1.88 Total: 47.85 kcal Total: -77.43 2.42 -75.00 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071967384.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.466 kcal (2) G-P(sol) polarization free energy of solvation -77.426 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.041 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.422 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.004 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.462 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds