Wall clock time and date at job start Tue Mar 31 2020 22:12:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09001 * 109.58629 * 2 1 4 4 C 1.53199 * 109.58227 * 120.42273 * 2 1 3 5 5 C 1.53044 * 109.30985 * 174.42209 * 4 2 1 6 6 C 1.53042 * 109.54114 * 298.63962 * 5 4 2 7 7 H 1.08995 * 109.49611 * 181.31881 * 6 5 4 8 8 N 1.46496 * 109.51870 * 301.39662 * 6 5 4 9 9 C 1.34781 * 119.99938 * 204.85583 * 8 6 5 10 10 O 1.21506 * 119.99723 * 359.97438 * 9 8 6 11 11 C 1.48275 * 120.00288 * 180.02562 * 9 8 6 12 12 C 1.40280 * 119.23859 * 179.72977 * 11 9 8 13 13 C 1.36510 * 119.80967 * 179.69193 * 12 11 9 14 14 C 1.40752 * 118.24883 * 0.58053 * 13 12 11 15 15 C 1.40417 * 121.28540 * 179.72838 * 14 13 12 16 16 C 1.36137 * 119.64979 * 180.02562 * 15 14 13 17 17 C 1.39437 * 120.91651 * 359.95242 * 16 15 14 18 18 C 1.35992 * 121.08079 * 0.02562 * 17 16 15 19 19 C 1.40823 * 119.73787 * 0.02562 * 18 17 16 20 20 N 1.31878 * 119.23951 * 359.97438 * 11 9 8 21 21 C 1.53190 * 109.31227 * 61.36030 * 6 5 4 22 22 N 1.46916 * 109.58944 * 239.71063 * 2 1 3 23 23 C 1.36935 * 120.63190 * 6.63012 * 22 2 1 24 24 H 1.07999 * 120.00320 * 329.22515 * 23 22 2 25 25 C 1.38822 * 120.00123 * 149.22234 * 23 22 2 26 26 N 1.31620 * 119.99894 * 345.91144 * 25 23 22 27 27 Si 1.86801 * 119.99668 * 165.91084 * 25 23 22 28 28 H 1.48506 * 109.46773 * 90.00394 * 27 25 23 29 29 H 1.48501 * 109.46790 * 210.00013 * 27 25 23 30 30 H 1.48498 * 109.47308 * 330.00413 * 27 25 23 31 31 H 1.08998 * 109.46787 * 180.28463 * 1 2 3 32 32 H 1.08997 * 109.47490 * 300.28455 * 1 2 3 33 33 H 1.08997 * 109.46927 * 60.29105 * 1 2 3 34 34 H 1.09001 * 109.50048 * 294.37654 * 4 2 1 35 35 H 1.08998 * 109.49708 * 54.47428 * 4 2 1 36 36 H 1.09000 * 109.46212 * 178.61275 * 5 4 2 37 37 H 1.09003 * 109.46176 * 58.65780 * 5 4 2 38 38 H 0.97001 * 120.00927 * 24.85456 * 8 6 5 39 39 H 1.07992 * 120.09335 * 359.97438 * 12 11 9 40 40 H 1.08004 * 120.87524 * 180.26470 * 13 12 11 41 41 H 1.07997 * 120.17472 * 0.02867 * 15 14 13 42 42 H 1.07998 * 119.54145 * 179.97438 * 16 15 14 43 43 H 1.07999 * 119.45613 * 180.02562 * 17 16 15 44 44 H 1.08002 * 120.12992 * 180.02562 * 18 17 16 45 45 H 1.09000 * 109.58135 * 185.57547 * 21 6 5 46 46 H 1.09006 * 109.58248 * 65.15897 * 21 6 5 47 47 H 0.96997 * 119.99522 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8954 1.0269 0.0000 4 6 2.0435 -0.7309 1.2446 5 6 3.5675 -0.8494 1.1693 6 6 3.9570 -1.6656 -0.0654 7 1 5.0412 -1.7694 -0.1056 8 7 3.3412 -2.9927 0.0109 9 6 3.8966 -4.0319 -0.6434 10 8 4.9078 -3.8680 -1.2968 11 6 3.2730 -5.3750 -0.5667 12 6 3.8614 -6.4441 -1.2586 13 6 3.3007 -7.6869 -1.1909 14 6 2.1289 -7.8485 -0.4281 15 6 1.4959 -9.0971 -0.3194 16 6 0.3636 -9.2155 0.4270 17 6 -0.1776 -8.1131 1.0875 18 6 0.4081 -6.8885 1.0056 19 6 1.5802 -6.7244 0.2425 20 7 2.1754 -5.5359 0.1465 21 6 3.4651 -0.9453 -1.3247 22 7 2.0226 -0.6981 -1.1952 23 6 1.1539 -1.1101 -2.1702 24 1 0.1442 -1.3918 -1.9101 25 6 1.5709 -1.1656 -3.4932 26 7 2.6876 -0.5712 -3.8567 27 14 0.5473 -2.0841 -4.7573 28 1 -0.4376 -1.1545 -5.3666 29 1 1.4371 -2.6258 -5.8156 30 1 -0.1714 -3.2020 -4.0947 31 1 -0.3633 -1.0276 0.0051 32 1 -0.3634 0.5182 0.8874 33 1 -0.3633 0.5093 -0.8926 34 1 1.7659 -0.1694 2.1367 35 1 1.6029 -1.7269 1.2893 36 1 3.9378 -1.3473 2.0654 37 1 4.0061 0.1460 1.0997 38 1 2.5337 -3.1236 0.5323 39 1 4.7579 -6.2854 -1.8393 40 1 3.7416 -8.5231 -1.7133 41 1 1.9052 -9.9591 -0.8253 42 1 -0.1221 -10.1766 0.5091 43 1 -1.0766 -8.2339 1.6736 44 1 -0.0240 -6.0452 1.5238 45 1 3.6520 -1.5691 -2.1988 46 1 3.9904 0.0038 -1.4315 47 1 2.9791 -0.6104 -4.7810 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001072019683.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:12:28 Heat of formation + Delta-G solvation = 21.575014 kcal Electronic energy + Delta-G solvation = -30043.429468 eV Core-core repulsion = 26190.597260 eV Total energy + Delta-G solvation = -3852.832209 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -42.04117 -40.83676 -39.24838 -37.79512 -35.86580 -34.70875 -34.42136 -32.49547 -31.79238 -31.43532 -30.87260 -27.94186 -26.94063 -26.03371 -24.68300 -23.90841 -23.07609 -22.56693 -21.95341 -20.38619 -19.42492 -18.93585 -18.24710 -18.08862 -17.21326 -16.67111 -16.39085 -16.21079 -15.79747 -15.66637 -15.47318 -15.28750 -15.18620 -14.97099 -14.71313 -14.43215 -14.28878 -14.05297 -14.01082 -13.66258 -13.00404 -12.91838 -12.68478 -12.66501 -12.59307 -12.55901 -12.45578 -12.44625 -12.16569 -12.11494 -11.64740 -11.59770 -11.38129 -11.21840 -11.07173 -10.60778 -10.52931 -10.05249 -9.78452 -9.26708 -8.55900 -7.83808 -5.29794 -0.83070 -0.34254 0.93889 1.34879 1.38036 1.42756 1.44919 2.10672 2.32105 2.47079 3.00112 3.10611 3.31784 3.57511 3.62634 3.69399 3.83156 3.89671 4.01054 4.08523 4.16138 4.18360 4.24927 4.38321 4.47441 4.50357 4.62268 4.71796 4.76755 4.80488 4.90496 4.94721 5.01149 5.05069 5.06903 5.08935 5.09674 5.24620 5.30885 5.37960 5.44747 5.49541 5.54987 5.59844 5.64790 5.71650 5.72134 5.87874 6.43925 6.45089 6.74781 7.17851 7.21851 7.91637 8.42802 9.21340 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.010328 B = 0.004174 C = 0.003902 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2710.364061 B = 6706.751753 C = 7173.533463 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C 0.155 3.845 3 H 0.019 0.981 4 C -0.120 4.120 5 C -0.110 4.110 6 C 0.122 3.878 7 H 0.071 0.929 8 N -0.670 5.670 9 C 0.556 3.444 10 O -0.576 6.576 11 C 0.098 3.902 12 C -0.148 4.148 13 C -0.049 4.049 14 C -0.104 4.104 15 C -0.101 4.101 16 C -0.103 4.103 17 C -0.091 4.091 18 C -0.109 4.109 19 C 0.095 3.905 20 N -0.458 5.458 21 C 0.174 3.826 22 N -0.595 5.595 23 C -0.235 4.235 24 H 0.069 0.931 25 C -0.052 4.052 26 N -0.934 5.934 27 Si 0.946 3.054 28 H -0.279 1.279 29 H -0.301 1.301 30 H -0.277 1.277 31 H 0.046 0.954 32 H 0.077 0.923 33 H 0.036 0.964 34 H 0.092 0.908 35 H 0.055 0.945 36 H 0.083 0.917 37 H 0.080 0.920 38 H 0.411 0.589 39 H 0.145 0.855 40 H 0.185 0.815 41 H 0.164 0.836 42 H 0.167 0.833 43 H 0.163 0.837 44 H 0.138 0.862 45 H 0.045 0.955 46 H 0.004 0.996 47 H 0.243 0.757 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.268 -17.506 14.413 23.074 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.050 3.950 3 H 0.037 0.963 4 C -0.159 4.159 5 C -0.148 4.148 6 C 0.016 3.984 7 H 0.089 0.911 8 N -0.320 5.320 9 C 0.341 3.659 10 O -0.456 6.456 11 C -0.054 4.054 12 C -0.169 4.169 13 C -0.074 4.074 14 C -0.106 4.106 15 C -0.119 4.119 16 C -0.121 4.121 17 C -0.111 4.111 18 C -0.128 4.128 19 C -0.028 4.028 20 N -0.170 5.170 21 C 0.047 3.953 22 N -0.319 5.319 23 C -0.366 4.366 24 H 0.086 0.914 25 C -0.247 4.247 26 N -0.581 5.581 27 Si 0.776 3.224 28 H -0.205 1.205 29 H -0.228 1.228 30 H -0.203 1.203 31 H 0.065 0.935 32 H 0.095 0.905 33 H 0.055 0.945 34 H 0.111 0.889 35 H 0.074 0.926 36 H 0.102 0.898 37 H 0.098 0.902 38 H 0.248 0.752 39 H 0.163 0.837 40 H 0.202 0.798 41 H 0.182 0.818 42 H 0.184 0.816 43 H 0.181 0.819 44 H 0.156 0.844 45 H 0.064 0.936 46 H 0.022 0.978 47 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges -3.947 -16.624 14.302 22.282 hybrid contribution 0.026 -0.412 -1.769 1.817 sum -3.921 -17.037 12.533 21.510 Atomic orbital electron populations 1.21713 0.94829 1.01058 1.00878 1.20764 0.94117 0.93295 0.86829 0.96347 1.21964 0.94840 1.00758 0.98361 1.21668 0.97251 1.00073 0.95763 1.21663 0.96576 0.82038 0.98124 0.91102 1.45682 1.29361 1.07684 1.49243 1.18326 0.83653 0.84587 0.79297 1.90711 1.26774 1.85173 1.42898 1.21266 0.93110 0.94335 0.96710 1.21822 1.02147 0.92984 0.99958 1.21868 0.93027 0.97413 0.95107 1.19321 0.96831 0.95924 0.98516 1.21388 0.96034 0.95388 0.99139 1.21489 0.95220 1.00351 0.95022 1.21368 1.00240 0.91342 0.98152 1.21079 0.93400 0.99799 0.98520 1.19389 0.96861 0.88175 0.98423 1.67743 1.07384 1.25556 1.16334 1.20830 0.84265 0.95389 0.94825 1.44221 1.02235 1.65585 1.19845 1.19310 0.95534 1.35490 0.86249 0.91354 1.25721 0.98904 1.01090 0.98943 1.70138 1.25347 1.46431 1.16169 0.85582 0.78250 0.78983 0.79605 1.20517 1.22750 1.20252 0.93532 0.90455 0.94525 0.88932 0.92632 0.89840 0.90183 0.75152 0.83696 0.79755 0.81799 0.81564 0.81946 0.84409 0.93645 0.97848 0.94734 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.58 7.96 71.98 0.57 -4.00 16 2 C 0.16 6.16 3.50 44.98 0.16 6.32 16 3 H 0.02 0.77 8.14 -2.39 -0.02 0.76 16 4 C -0.12 -3.72 5.21 30.68 0.16 -3.56 16 5 C -0.11 -3.42 5.59 30.62 0.17 -3.25 16 6 C 0.12 4.97 2.81 45.07 0.13 5.10 16 7 H 0.07 2.96 7.58 -2.39 -0.02 2.94 16 8 N -0.67 -27.10 4.90 -444.63 -2.18 -29.28 16 9 C 0.56 24.12 7.78 86.91 0.68 24.80 16 10 O -0.58 -28.30 15.95 -3.73 -0.06 -28.36 16 11 C 0.10 3.69 6.75 42.31 0.29 3.97 16 12 C -0.15 -4.66 9.54 22.36 0.21 -4.44 16 13 C -0.05 -1.12 9.88 22.48 0.22 -0.90 16 14 C -0.10 -2.45 5.75 -21.22 -0.12 -2.57 16 15 C -0.10 -1.52 9.77 22.31 0.22 -1.30 16 16 C -0.10 -1.25 9.96 22.07 0.22 -1.03 16 17 C -0.09 -1.34 9.94 22.04 0.22 -1.12 16 18 C -0.11 -2.44 9.99 22.38 0.22 -2.22 16 19 C 0.10 2.74 6.61 40.47 0.27 3.01 16 20 N -0.46 -15.96 9.47 -177.77 -1.68 -17.65 16 21 C 0.17 8.94 4.87 86.36 0.42 9.36 16 22 N -0.60 -29.85 2.90 -675.23 -1.96 -31.81 16 23 C -0.24 -13.11 8.54 84.04 0.72 -12.39 16 24 H 0.07 3.72 6.27 -2.91 -0.02 3.70 16 25 C -0.05 -3.05 4.97 84.86 0.42 -2.63 16 26 N -0.93 -58.86 11.21 21.65 0.24 -58.61 16 27 Si 0.95 48.21 29.58 68.60 2.03 50.24 16 28 H -0.28 -13.66 7.11 99.48 0.71 -12.95 16 29 H -0.30 -15.69 7.11 99.48 0.71 -14.98 16 30 H -0.28 -13.73 7.11 99.48 0.71 -13.02 16 31 H 0.05 1.71 7.44 -2.39 -0.02 1.69 16 32 H 0.08 2.15 8.14 -2.39 -0.02 2.13 16 33 H 0.04 1.47 7.63 -2.39 -0.02 1.45 16 34 H 0.09 2.23 8.14 -2.39 -0.02 2.21 16 35 H 0.06 1.77 6.41 -2.39 -0.02 1.75 16 36 H 0.08 2.16 8.14 -2.39 -0.02 2.14 16 37 H 0.08 2.40 8.14 -2.39 -0.02 2.38 16 38 H 0.41 15.57 6.08 -92.71 -0.56 15.01 16 39 H 0.15 4.51 7.60 -2.91 -0.02 4.49 16 40 H 0.19 2.54 8.06 -2.91 -0.02 2.52 16 41 H 0.16 1.32 8.06 -2.91 -0.02 1.30 16 42 H 0.17 0.76 8.06 -2.91 -0.02 0.74 16 43 H 0.16 1.29 8.06 -2.91 -0.02 1.26 16 44 H 0.14 2.92 8.06 -2.91 -0.02 2.90 16 45 H 0.05 2.79 6.17 -2.39 -0.01 2.77 16 46 H 0.00 0.20 8.14 -2.38 -0.02 0.18 16 47 H 0.24 15.13 8.31 -92.71 -0.77 14.36 16 Total: -1.00 -78.59 377.34 1.99 -76.60 By element: Atomic # 1 Polarization: 25.30 SS G_CDS: 0.43 Total: 25.73 kcal Atomic # 6 Polarization: 7.97 SS G_CDS: 5.17 Total: 13.14 kcal Atomic # 7 Polarization: -131.77 SS G_CDS: -5.58 Total: -137.35 kcal Atomic # 8 Polarization: -28.30 SS G_CDS: -0.06 Total: -28.36 kcal Atomic # 14 Polarization: 48.21 SS G_CDS: 2.03 Total: 50.24 kcal Total: -78.59 1.99 -76.60 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001072019683.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.179 kcal (2) G-P(sol) polarization free energy of solvation -78.592 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.587 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.988 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.604 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.575 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds