Wall clock time and date at job start Tue Mar 31 2020 22:12:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08999 * 109.58341 * 2 1 4 4 C 1.53191 * 109.58261 * 239.57103 * 2 1 3 5 5 C 1.53044 * 109.31282 * 185.57801 * 4 2 1 6 6 C 1.53044 * 109.53536 * 61.36383 * 5 4 2 7 7 H 1.08999 * 109.49834 * 58.62145 * 6 5 4 8 8 N 1.46498 * 109.49791 * 178.68349 * 6 5 4 9 9 C 1.34776 * 120.00403 * 205.00328 * 8 6 5 10 10 O 1.21504 * 119.99694 * 359.97438 * 9 8 6 11 11 C 1.48278 * 120.00303 * 180.02562 * 9 8 6 12 12 C 1.40277 * 119.24376 * 179.97438 * 11 9 8 13 13 C 1.36504 * 119.82162 * 179.97438 * 12 11 9 14 14 C 1.40758 * 118.23876 * 0.02562 * 13 12 11 15 15 C 1.40418 * 121.27950 * 180.02562 * 14 13 12 16 16 C 1.36133 * 119.64857 * 180.02562 * 15 14 13 17 17 C 1.39428 * 120.91888 * 359.95622 * 16 15 14 18 18 C 1.35999 * 121.08288 * 0.02562 * 17 16 15 19 19 C 1.40824 * 119.73245 * 0.02562 * 18 17 16 20 20 N 1.31881 * 119.23856 * 359.72702 * 11 9 8 21 21 C 1.53626 * 109.24537 * 298.51372 * 6 5 4 22 22 N 1.46925 * 109.58357 * 120.28645 * 2 1 3 23 23 C 1.36935 * 120.63365 * 353.36762 * 22 2 1 24 24 H 1.07999 * 120.00221 * 29.97591 * 23 22 2 25 25 C 1.38817 * 119.99970 * 209.97357 * 23 22 2 26 26 N 1.31617 * 120.00045 * 15.41423 * 25 23 22 27 27 Si 1.86798 * 120.00091 * 195.68267 * 25 23 22 28 28 H 1.48496 * 109.46823 * 90.00076 * 27 25 23 29 29 H 1.48496 * 109.47325 * 210.00554 * 27 25 23 30 30 H 1.48508 * 109.47019 * 330.00486 * 27 25 23 31 31 H 1.09010 * 109.46861 * 299.71613 * 1 2 3 32 32 H 1.09003 * 109.47265 * 59.71651 * 1 2 3 33 33 H 1.09001 * 109.47286 * 179.72032 * 1 2 3 34 34 H 1.08995 * 109.49980 * 305.52741 * 4 2 1 35 35 H 1.08999 * 109.49830 * 65.62771 * 4 2 1 36 36 H 1.08991 * 109.46235 * 181.38825 * 5 4 2 37 37 H 1.09004 * 109.45852 * 301.36698 * 5 4 2 38 38 H 0.97005 * 119.99972 * 25.00294 * 8 6 5 39 39 H 1.08000 * 120.08477 * 359.95771 * 12 11 9 40 40 H 1.07997 * 120.87834 * 179.97438 * 13 12 11 41 41 H 1.08005 * 120.17671 * 359.96844 * 15 14 13 42 42 H 1.08004 * 119.54456 * 179.97438 * 16 15 14 43 43 H 1.08002 * 119.46430 * 180.02562 * 17 16 15 44 44 H 1.07995 * 120.13606 * 180.02562 * 18 17 16 45 45 H 1.09003 * 109.73714 * 295.11913 * 21 6 5 46 46 H 1.08994 * 109.66256 * 174.55141 * 21 6 5 47 47 H 0.97000 * 120.00343 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8953 1.0269 0.0000 4 6 2.0434 -0.7310 -1.2445 5 6 3.5674 -0.8496 -1.1692 6 6 3.9568 -1.6657 0.0655 7 1 3.4987 -2.6531 0.0083 8 7 5.4141 -1.8054 0.1197 9 6 5.9676 -2.8474 0.7712 10 8 5.2578 -3.6707 1.3139 11 6 7.4426 -2.9884 0.8265 12 6 8.0016 -4.0788 1.5093 13 6 9.3581 -4.2204 1.5671 14 6 10.1566 -3.2519 0.9302 15 6 11.5582 -3.3353 0.9493 16 6 12.2982 -2.3798 0.3227 17 6 11.6840 -1.3178 -0.3398 18 6 10.3294 -1.2043 -0.3796 19 6 9.5284 -2.1718 0.2573 20 7 8.1986 -2.0884 0.2284 21 6 3.4656 -0.9404 1.3276 22 7 2.0225 -0.6981 1.1953 23 6 1.1537 -1.1100 2.1704 24 1 0.1402 -1.3793 1.9120 25 6 1.5756 -1.1814 3.4909 26 7 2.6862 -0.5795 3.8604 27 14 0.5712 -2.1382 4.7419 28 1 1.0370 -3.5477 4.7770 29 1 0.7409 -1.5271 6.0847 30 1 -0.8631 -2.1002 4.3585 31 1 -0.3633 0.5095 0.8926 32 1 -0.3634 0.5182 -0.8874 33 1 -0.3634 -1.0277 -0.0050 34 1 1.6029 -1.7269 -1.2891 35 1 1.7659 -0.1696 -2.1366 36 1 3.9377 -1.3475 -2.0652 37 1 4.0061 0.1459 -1.0992 38 1 5.9808 -1.1478 -0.3133 39 1 7.3605 -4.8041 1.9881 40 1 9.8067 -5.0531 2.0885 41 1 12.0465 -4.1527 1.4591 42 1 13.3762 -2.4454 0.3388 43 1 12.2940 -0.5731 -0.8294 44 1 9.8697 -0.3756 -0.8975 45 1 3.9878 0.0107 1.4323 46 1 3.6532 -1.5610 2.2037 47 1 2.9813 -0.6297 4.7831 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001072019685.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:12:37 Heat of formation + Delta-G solvation = 39.845087 kcal Electronic energy + Delta-G solvation = -29013.561779 eV Core-core repulsion = 25161.521820 eV Total energy + Delta-G solvation = -3852.039959 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -41.10824 -39.36974 -37.72671 -36.85429 -34.47809 -33.70795 -32.76023 -31.20253 -30.49440 -30.06310 -29.72372 -26.25733 -25.27923 -24.60451 -23.76409 -22.33442 -22.22512 -21.11800 -20.10653 -19.32778 -18.26844 -17.77724 -17.34255 -16.37218 -15.60928 -15.40996 -15.15715 -14.92540 -14.68697 -14.55617 -14.00678 -13.94415 -13.73931 -13.65831 -13.32341 -13.31025 -13.25343 -12.69501 -12.34033 -11.93617 -11.89923 -11.81419 -11.71229 -11.40556 -11.07394 -10.84440 -10.80288 -10.68909 -10.50068 -10.36235 -10.22196 -10.10586 -9.91773 -9.69829 -9.41229 -9.35963 -8.99486 -8.55542 -8.45642 -8.36955 -6.56143 -5.69590 -3.14608 0.03056 0.50005 1.73658 2.39428 3.30891 3.39751 3.46317 3.52311 3.53122 3.98401 4.02628 4.31587 4.53255 4.56730 4.58829 4.75707 4.89473 4.94059 5.12252 5.26369 5.39820 5.41965 5.50896 5.53573 5.61881 5.71021 5.72395 5.80487 5.85238 6.01400 6.08066 6.14035 6.16718 6.25476 6.31909 6.34733 6.43734 6.49460 6.54017 6.56570 6.67632 6.78782 6.96943 7.09209 7.17280 7.35547 7.53463 7.78200 7.90218 7.99304 8.54053 8.59429 9.28919 9.93191 10.49149 11.38356 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.014731 B = 0.002913 C = 0.002600 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1900.333603 B = 9609.148679 C =10768.420054 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.164 3.836 3 H 0.025 0.975 4 C -0.125 4.125 5 C -0.116 4.116 6 C 0.114 3.886 7 H 0.084 0.916 8 N -0.696 5.696 9 C 0.561 3.439 10 O -0.522 6.522 11 C 0.130 3.870 12 C -0.123 4.123 13 C -0.065 4.065 14 C -0.091 4.091 15 C -0.100 4.100 16 C -0.113 4.113 17 C -0.107 4.107 18 C -0.084 4.084 19 C 0.124 3.876 20 N -0.445 5.445 21 C 0.169 3.831 22 N -0.583 5.583 23 C -0.253 4.253 24 H 0.070 0.930 25 C 0.006 3.994 26 N -0.900 5.900 27 Si 0.900 3.100 28 H -0.286 1.286 29 H -0.292 1.292 30 H -0.279 1.279 31 H 0.061 0.939 32 H 0.037 0.963 33 H 0.053 0.947 34 H 0.061 0.939 35 H 0.055 0.945 36 H 0.051 0.949 37 H 0.060 0.940 38 H 0.403 0.597 39 H 0.152 0.848 40 H 0.145 0.855 41 H 0.131 0.869 42 H 0.127 0.873 43 H 0.130 0.870 44 H 0.138 0.862 45 H 0.019 0.981 46 H 0.093 0.907 47 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.223 -3.036 -10.349 21.175 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.058 3.942 3 H 0.043 0.957 4 C -0.165 4.165 5 C -0.154 4.154 6 C 0.009 3.991 7 H 0.102 0.898 8 N -0.346 5.346 9 C 0.344 3.656 10 O -0.397 6.397 11 C -0.024 4.024 12 C -0.143 4.143 13 C -0.091 4.091 14 C -0.094 4.094 15 C -0.119 4.119 16 C -0.131 4.131 17 C -0.127 4.127 18 C -0.103 4.103 19 C 0.000 4.000 20 N -0.157 5.157 21 C 0.042 3.958 22 N -0.306 5.306 23 C -0.382 4.382 24 H 0.088 0.912 25 C -0.193 4.193 26 N -0.544 5.544 27 Si 0.730 3.270 28 H -0.213 1.213 29 H -0.219 1.219 30 H -0.204 1.204 31 H 0.080 0.920 32 H 0.056 0.944 33 H 0.072 0.928 34 H 0.079 0.921 35 H 0.073 0.927 36 H 0.070 0.930 37 H 0.078 0.922 38 H 0.238 0.762 39 H 0.170 0.830 40 H 0.163 0.837 41 H 0.149 0.851 42 H 0.145 0.855 43 H 0.148 0.852 44 H 0.156 0.844 45 H 0.037 0.963 46 H 0.111 0.889 47 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 17.377 -2.862 -10.256 20.380 hybrid contribution 0.398 -0.805 1.012 1.353 sum 17.776 -3.668 -9.244 20.369 Atomic orbital electron populations 1.21801 0.95999 1.01361 1.00194 1.20499 0.93065 0.93575 0.87092 0.95731 1.22039 0.94252 1.01312 0.98899 1.21677 0.97376 0.99749 0.96631 1.22178 0.77367 1.01036 0.98524 0.89812 1.45943 1.08746 1.26083 1.53820 1.17834 0.85503 0.82453 0.79771 1.90831 1.61453 1.42460 1.44946 1.21605 0.94673 0.91627 0.94507 1.21824 0.95745 0.98399 0.98362 1.21459 0.93202 0.97804 0.96617 1.18981 0.94952 0.96159 0.99262 1.20994 0.91918 0.99472 0.99475 1.20971 1.00327 0.94406 0.97351 1.20914 0.94521 0.98269 0.99007 1.20895 0.93071 0.97961 0.98327 1.18878 0.89350 0.94454 0.97293 1.67864 1.05277 1.25827 1.16723 1.21161 0.83563 0.96879 0.94161 1.44037 1.02552 1.64860 1.19195 1.19142 0.95142 1.38013 0.85913 0.91202 1.25101 0.97838 0.99272 0.97082 1.70005 1.24081 1.43606 1.16694 0.86323 0.79686 0.80124 0.80838 1.21318 1.21869 1.20449 0.91991 0.94374 0.92820 0.92052 0.92657 0.93010 0.92170 0.76222 0.82997 0.83730 0.85129 0.85489 0.85186 0.84395 0.96330 0.88854 0.93751 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.59 7.95 37.16 0.30 -2.29 16 2 C 0.16 3.42 3.49 -67.60 -0.24 3.18 16 3 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 4 C -0.13 -2.17 5.37 -26.61 -0.14 -2.32 16 5 C -0.12 -1.95 5.35 -26.69 -0.14 -2.10 16 6 C 0.11 2.30 2.62 -67.58 -0.18 2.12 16 7 H 0.08 1.88 7.58 -51.93 -0.39 1.49 16 8 N -0.70 -12.53 5.07 -54.27 -0.27 -12.80 16 9 C 0.56 10.68 7.78 -12.13 -0.09 10.58 16 10 O -0.52 -11.75 15.94 5.36 0.09 -11.66 16 11 C 0.13 2.07 6.75 -82.95 -0.56 1.51 16 12 C -0.12 -1.67 9.54 -39.44 -0.38 -2.05 16 13 C -0.06 -0.70 9.88 -39.26 -0.39 -1.09 16 14 C -0.09 -1.03 5.75 -106.72 -0.61 -1.64 16 15 C -0.10 -0.83 9.77 -39.52 -0.39 -1.22 16 16 C -0.11 -0.82 9.95 -39.90 -0.40 -1.22 16 17 C -0.11 -0.84 9.94 -39.94 -0.40 -1.23 16 18 C -0.08 -0.85 9.99 -39.41 -0.39 -1.25 16 19 C 0.12 1.59 6.61 -84.86 -0.56 1.02 16 20 N -0.45 -6.58 9.47 -7.54 -0.07 -6.65 16 21 C 0.17 4.20 4.89 -3.48 -0.02 4.18 16 22 N -0.58 -14.72 2.98 -164.51 -0.49 -15.21 16 23 C -0.25 -6.98 8.57 -15.06 -0.13 -7.11 16 24 H 0.07 1.88 6.25 -52.49 -0.33 1.55 16 25 C 0.01 0.17 4.94 -17.43 -0.09 0.09 16 26 N -0.90 -27.01 11.22 55.49 0.62 -26.39 16 27 Si 0.90 22.59 29.58 -169.99 -5.03 17.56 16 28 H -0.29 -7.30 7.11 56.52 0.40 -6.89 16 29 H -0.29 -7.36 7.11 56.52 0.40 -6.96 16 30 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 31 H 0.06 1.27 7.63 -51.92 -0.40 0.88 16 32 H 0.04 0.60 8.14 -51.93 -0.42 0.17 16 33 H 0.05 1.03 7.44 -51.93 -0.39 0.65 16 34 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 35 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 36 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 37 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 38 H 0.40 6.34 7.91 -40.82 -0.32 6.02 16 39 H 0.15 2.02 7.60 -52.49 -0.40 1.62 16 40 H 0.14 1.05 8.06 -52.49 -0.42 0.63 16 41 H 0.13 0.75 8.06 -52.48 -0.42 0.32 16 42 H 0.13 0.58 8.06 -52.48 -0.42 0.16 16 43 H 0.13 0.67 8.06 -52.49 -0.42 0.24 16 44 H 0.14 1.24 8.06 -52.49 -0.42 0.81 16 45 H 0.02 0.49 8.14 -51.93 -0.42 0.06 16 46 H 0.09 2.71 6.13 -51.93 -0.32 2.40 16 47 H 0.25 7.40 8.31 -40.82 -0.34 7.06 16 LS Contribution 380.84 15.07 5.74 5.74 Total: -1.00 -33.36 380.84 -10.97 -44.33 By element: Atomic # 1 Polarization: 12.66 SS G_CDS: -6.75 Total: 5.91 kcal Atomic # 6 Polarization: 3.99 SS G_CDS: -4.80 Total: -0.81 kcal Atomic # 7 Polarization: -60.85 SS G_CDS: -0.21 Total: -61.06 kcal Atomic # 8 Polarization: -11.75 SS G_CDS: 0.09 Total: -11.66 kcal Atomic # 14 Polarization: 22.59 SS G_CDS: -5.03 Total: 17.56 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -33.36 -10.97 -44.33 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001072019685.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.177 kcal (2) G-P(sol) polarization free energy of solvation -33.360 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.817 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.972 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.332 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.845 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds