Wall clock time and date at job start Tue Mar 31 2020 22:12:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08999 * 109.58341 * 2 1 4 4 C 1.53191 * 109.58261 * 239.57103 * 2 1 3 5 5 C 1.53044 * 109.31282 * 185.57801 * 4 2 1 6 6 C 1.53044 * 109.53536 * 61.36383 * 5 4 2 7 7 H 1.08999 * 109.49834 * 58.62145 * 6 5 4 8 8 N 1.46498 * 109.49791 * 178.68349 * 6 5 4 9 9 C 1.34776 * 120.00403 * 205.00328 * 8 6 5 10 10 O 1.21504 * 119.99694 * 359.97438 * 9 8 6 11 11 C 1.48278 * 120.00303 * 180.02562 * 9 8 6 12 12 C 1.40277 * 119.24376 * 179.97438 * 11 9 8 13 13 C 1.36504 * 119.82162 * 179.97438 * 12 11 9 14 14 C 1.40758 * 118.23876 * 0.02562 * 13 12 11 15 15 C 1.40418 * 121.27950 * 180.02562 * 14 13 12 16 16 C 1.36133 * 119.64857 * 180.02562 * 15 14 13 17 17 C 1.39428 * 120.91888 * 359.95622 * 16 15 14 18 18 C 1.35999 * 121.08288 * 0.02562 * 17 16 15 19 19 C 1.40824 * 119.73245 * 0.02562 * 18 17 16 20 20 N 1.31881 * 119.23856 * 359.72702 * 11 9 8 21 21 C 1.53626 * 109.24537 * 298.51372 * 6 5 4 22 22 N 1.46925 * 109.58357 * 120.28645 * 2 1 3 23 23 C 1.36935 * 120.63365 * 353.36762 * 22 2 1 24 24 H 1.07999 * 120.00221 * 29.97591 * 23 22 2 25 25 C 1.38817 * 119.99970 * 209.97357 * 23 22 2 26 26 N 1.31617 * 120.00045 * 15.41423 * 25 23 22 27 27 Si 1.86798 * 120.00091 * 195.68267 * 25 23 22 28 28 H 1.48496 * 109.46823 * 90.00076 * 27 25 23 29 29 H 1.48496 * 109.47325 * 210.00554 * 27 25 23 30 30 H 1.48508 * 109.47019 * 330.00486 * 27 25 23 31 31 H 1.09010 * 109.46861 * 299.71613 * 1 2 3 32 32 H 1.09003 * 109.47265 * 59.71651 * 1 2 3 33 33 H 1.09001 * 109.47286 * 179.72032 * 1 2 3 34 34 H 1.08995 * 109.49980 * 305.52741 * 4 2 1 35 35 H 1.08999 * 109.49830 * 65.62771 * 4 2 1 36 36 H 1.08991 * 109.46235 * 181.38825 * 5 4 2 37 37 H 1.09004 * 109.45852 * 301.36698 * 5 4 2 38 38 H 0.97005 * 119.99972 * 25.00294 * 8 6 5 39 39 H 1.08000 * 120.08477 * 359.95771 * 12 11 9 40 40 H 1.07997 * 120.87834 * 179.97438 * 13 12 11 41 41 H 1.08005 * 120.17671 * 359.96844 * 15 14 13 42 42 H 1.08004 * 119.54456 * 179.97438 * 16 15 14 43 43 H 1.08002 * 119.46430 * 180.02562 * 17 16 15 44 44 H 1.07995 * 120.13606 * 180.02562 * 18 17 16 45 45 H 1.09003 * 109.73714 * 295.11913 * 21 6 5 46 46 H 1.08994 * 109.66256 * 174.55141 * 21 6 5 47 47 H 0.97000 * 120.00343 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8953 1.0269 0.0000 4 6 2.0434 -0.7310 -1.2445 5 6 3.5674 -0.8496 -1.1692 6 6 3.9568 -1.6657 0.0655 7 1 3.4987 -2.6531 0.0083 8 7 5.4141 -1.8054 0.1197 9 6 5.9676 -2.8474 0.7712 10 8 5.2578 -3.6707 1.3139 11 6 7.4426 -2.9884 0.8265 12 6 8.0016 -4.0788 1.5093 13 6 9.3581 -4.2204 1.5671 14 6 10.1566 -3.2519 0.9302 15 6 11.5582 -3.3353 0.9493 16 6 12.2982 -2.3798 0.3227 17 6 11.6840 -1.3178 -0.3398 18 6 10.3294 -1.2043 -0.3796 19 6 9.5284 -2.1718 0.2573 20 7 8.1986 -2.0884 0.2284 21 6 3.4656 -0.9404 1.3276 22 7 2.0225 -0.6981 1.1953 23 6 1.1537 -1.1100 2.1704 24 1 0.1402 -1.3793 1.9120 25 6 1.5756 -1.1814 3.4909 26 7 2.6862 -0.5795 3.8604 27 14 0.5712 -2.1382 4.7419 28 1 1.0370 -3.5477 4.7770 29 1 0.7409 -1.5271 6.0847 30 1 -0.8631 -2.1002 4.3585 31 1 -0.3633 0.5095 0.8926 32 1 -0.3634 0.5182 -0.8874 33 1 -0.3634 -1.0277 -0.0050 34 1 1.6029 -1.7269 -1.2891 35 1 1.7659 -0.1696 -2.1366 36 1 3.9377 -1.3475 -2.0652 37 1 4.0061 0.1459 -1.0992 38 1 5.9808 -1.1478 -0.3133 39 1 7.3605 -4.8041 1.9881 40 1 9.8067 -5.0531 2.0885 41 1 12.0465 -4.1527 1.4591 42 1 13.3762 -2.4454 0.3388 43 1 12.2940 -0.5731 -0.8294 44 1 9.8697 -0.3756 -0.8975 45 1 3.9878 0.0107 1.4323 46 1 3.6532 -1.5610 2.2037 47 1 2.9813 -0.6297 4.7831 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001072019685.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:12:36 Heat of formation + Delta-G solvation = 18.371694 kcal Electronic energy + Delta-G solvation = -29014.492935 eV Core-core repulsion = 25161.521820 eV Total energy + Delta-G solvation = -3852.971115 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -42.07461 -40.79720 -39.30102 -37.83909 -36.11778 -34.76998 -34.52663 -32.51558 -31.81835 -31.45636 -30.90773 -27.85986 -27.02417 -25.87571 -24.67700 -24.01045 -23.08810 -22.54417 -21.68274 -21.03525 -19.29642 -18.90609 -18.34761 -18.17958 -17.30598 -16.79940 -16.38711 -16.27966 -15.78495 -15.63816 -15.46766 -15.30329 -15.18799 -15.02002 -14.87220 -14.51501 -14.27962 -14.12632 -14.03872 -13.51019 -13.10559 -12.79357 -12.74994 -12.68459 -12.62799 -12.57616 -12.46645 -12.30059 -12.12567 -11.99649 -11.70380 -11.66487 -11.52077 -11.28266 -11.14825 -10.63751 -10.55747 -10.18344 -9.82890 -9.27950 -8.63623 -7.85778 -5.33032 -0.86871 -0.36250 0.91561 1.37466 1.40667 1.45690 1.51362 1.98391 2.22817 2.49945 2.92314 3.07253 3.30615 3.54535 3.61270 3.72215 3.80781 3.86803 3.94511 4.06883 4.14711 4.23393 4.24477 4.36721 4.37697 4.49869 4.56459 4.69647 4.75298 4.78797 4.87558 4.90294 4.99984 5.02516 5.05285 5.08280 5.16592 5.26883 5.29021 5.37053 5.41050 5.43411 5.48783 5.54653 5.59611 5.69862 5.75524 5.86324 6.34014 6.42771 6.67891 7.10734 7.16608 7.88092 8.38782 9.19557 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.014731 B = 0.002913 C = 0.002600 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1900.333603 B = 9609.148679 C =10768.420054 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C 0.152 3.848 3 H 0.021 0.979 4 C -0.116 4.116 5 C -0.108 4.108 6 C 0.129 3.871 7 H 0.058 0.942 8 N -0.689 5.689 9 C 0.557 3.443 10 O -0.570 6.570 11 C 0.100 3.900 12 C -0.148 4.148 13 C -0.046 4.046 14 C -0.102 4.102 15 C -0.102 4.102 16 C -0.102 4.102 17 C -0.091 4.091 18 C -0.108 4.108 19 C 0.096 3.904 20 N -0.457 5.457 21 C 0.183 3.817 22 N -0.602 5.602 23 C -0.250 4.250 24 H 0.077 0.923 25 C -0.055 4.055 26 N -0.936 5.936 27 Si 0.959 3.041 28 H -0.295 1.295 29 H -0.294 1.294 30 H -0.260 1.260 31 H 0.038 0.962 32 H 0.079 0.921 33 H 0.047 0.953 34 H 0.055 0.945 35 H 0.097 0.903 36 H 0.084 0.916 37 H 0.070 0.930 38 H 0.415 0.585 39 H 0.143 0.857 40 H 0.185 0.815 41 H 0.164 0.836 42 H 0.166 0.834 43 H 0.163 0.837 44 H 0.142 0.858 45 H -0.005 1.005 46 H 0.042 0.958 47 H 0.244 0.756 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.996 -2.973 -12.660 24.697 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.047 3.953 3 H 0.038 0.962 4 C -0.155 4.155 5 C -0.146 4.146 6 C 0.023 3.977 7 H 0.076 0.924 8 N -0.339 5.339 9 C 0.343 3.657 10 O -0.448 6.448 11 C -0.053 4.053 12 C -0.169 4.169 13 C -0.072 4.072 14 C -0.104 4.104 15 C -0.120 4.120 16 C -0.120 4.120 17 C -0.111 4.111 18 C -0.127 4.127 19 C -0.028 4.028 20 N -0.169 5.169 21 C 0.055 3.945 22 N -0.326 5.326 23 C -0.380 4.380 24 H 0.095 0.905 25 C -0.250 4.250 26 N -0.582 5.582 27 Si 0.788 3.212 28 H -0.223 1.223 29 H -0.221 1.221 30 H -0.184 1.184 31 H 0.057 0.943 32 H 0.098 0.902 33 H 0.066 0.934 34 H 0.074 0.926 35 H 0.116 0.884 36 H 0.102 0.898 37 H 0.089 0.911 38 H 0.252 0.748 39 H 0.161 0.839 40 H 0.202 0.798 41 H 0.181 0.819 42 H 0.183 0.817 43 H 0.181 0.819 44 H 0.159 0.841 45 H 0.013 0.987 46 H 0.060 0.940 47 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges 20.140 -2.773 -12.620 23.929 hybrid contribution -0.205 -0.739 1.643 1.814 sum 19.935 -3.512 -10.977 23.027 Atomic orbital electron populations 1.21728 0.94506 1.01246 1.01094 1.20829 0.94469 0.93326 0.86689 0.96160 1.21945 0.94081 1.01063 0.98421 1.21655 0.97442 0.99835 0.95654 1.21752 0.78413 0.99516 0.98059 0.92415 1.45821 1.08027 1.26333 1.53742 1.18428 0.87146 0.81704 0.78471 1.90780 1.63105 1.44098 1.46820 1.21133 0.92724 0.93785 0.97616 1.21807 0.97245 0.98168 0.99631 1.21865 0.91760 0.98350 0.95208 1.19318 0.96677 0.95566 0.98840 1.21390 0.90339 1.00789 0.99482 1.21498 1.02285 0.93024 0.95179 1.21382 0.93639 0.98667 0.97371 1.21090 0.94181 0.98043 0.99340 1.19375 0.88733 0.96146 0.98569 1.67723 1.06680 1.25640 1.16845 1.20802 0.83951 0.95046 0.94657 1.44333 1.02295 1.65758 1.20225 1.19503 0.95615 1.36448 0.86477 0.90537 1.25867 0.99175 1.00863 0.99138 1.70177 1.25979 1.45705 1.16336 0.85377 0.79303 0.78014 0.78541 1.22277 1.22090 1.18412 0.94305 0.90206 0.93405 0.92624 0.88420 0.89777 0.91106 0.74816 0.83889 0.79825 0.81882 0.81653 0.81918 0.84066 0.98675 0.93966 0.94692 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.72 7.95 71.98 0.57 -4.15 16 2 C 0.15 6.26 3.49 44.97 0.16 6.42 16 3 H 0.02 0.87 8.14 -2.39 -0.02 0.85 16 4 C -0.12 -3.77 5.37 30.67 0.16 -3.61 16 5 C -0.11 -3.49 5.35 30.62 0.16 -3.33 16 6 C 0.13 5.42 2.62 45.22 0.12 5.54 16 7 H 0.06 2.75 7.58 -2.39 -0.02 2.73 16 8 N -0.69 -26.42 5.07 -443.92 -2.25 -28.67 16 9 C 0.56 23.11 7.78 86.91 0.68 23.79 16 10 O -0.57 -28.22 15.94 -3.73 -0.06 -28.28 16 11 C 0.10 3.43 6.75 42.31 0.29 3.71 16 12 C -0.15 -4.27 9.54 22.36 0.21 -4.06 16 13 C -0.05 -0.96 9.88 22.48 0.22 -0.73 16 14 C -0.10 -2.11 5.75 -21.22 -0.12 -2.23 16 15 C -0.10 -1.27 9.77 22.31 0.22 -1.06 16 16 C -0.10 -0.98 9.95 22.07 0.22 -0.76 16 17 C -0.09 -1.06 9.94 22.04 0.22 -0.84 16 18 C -0.11 -2.03 9.99 22.38 0.22 -1.80 16 19 C 0.10 2.41 6.61 40.47 0.27 2.68 16 20 N -0.46 -14.10 9.47 -177.77 -1.68 -15.78 16 21 C 0.18 9.67 4.89 86.51 0.42 10.09 16 22 N -0.60 -31.56 2.98 -674.39 -2.01 -33.57 16 23 C -0.25 -14.34 8.57 84.04 0.72 -13.62 16 24 H 0.08 4.20 6.25 -2.91 -0.02 4.18 16 25 C -0.06 -3.32 4.94 84.86 0.42 -2.90 16 26 N -0.94 -59.76 11.22 21.65 0.24 -59.52 16 27 Si 0.96 48.46 29.58 68.60 2.03 50.49 16 28 H -0.30 -15.21 7.11 99.48 0.71 -14.50 16 29 H -0.29 -14.83 7.11 99.48 0.71 -14.12 16 30 H -0.26 -12.17 7.11 99.48 0.71 -11.46 16 31 H 0.04 1.58 7.63 -2.38 -0.02 1.56 16 32 H 0.08 2.26 8.14 -2.39 -0.02 2.24 16 33 H 0.05 1.79 7.44 -2.39 -0.02 1.78 16 34 H 0.05 1.90 8.14 -2.39 -0.02 1.88 16 35 H 0.10 2.43 8.14 -2.39 -0.02 2.41 16 36 H 0.08 2.26 8.14 -2.39 -0.02 2.24 16 37 H 0.07 2.18 8.14 -2.38 -0.02 2.16 16 38 H 0.41 13.68 7.91 -92.70 -0.73 12.95 16 39 H 0.14 4.23 7.60 -2.91 -0.02 4.20 16 40 H 0.18 2.16 8.06 -2.91 -0.02 2.14 16 41 H 0.16 0.98 8.06 -2.91 -0.02 0.95 16 42 H 0.17 0.41 8.06 -2.91 -0.02 0.38 16 43 H 0.16 0.84 8.06 -2.91 -0.02 0.82 16 44 H 0.14 2.42 8.06 -2.91 -0.02 2.39 16 45 H 0.00 -0.27 8.14 -2.39 -0.02 -0.29 16 46 H 0.04 2.66 6.13 -2.39 -0.01 2.65 16 47 H 0.24 15.29 8.31 -92.71 -0.77 14.52 16 Total: -1.00 -81.21 380.84 1.69 -79.52 By element: Atomic # 1 Polarization: 22.41 SS G_CDS: 0.25 Total: 22.66 kcal Atomic # 6 Polarization: 7.99 SS G_CDS: 5.16 Total: 13.15 kcal Atomic # 7 Polarization: -131.84 SS G_CDS: -5.70 Total: -137.54 kcal Atomic # 8 Polarization: -28.22 SS G_CDS: -0.06 Total: -28.28 kcal Atomic # 14 Polarization: 48.46 SS G_CDS: 2.03 Total: 50.49 kcal Total: -81.21 1.69 -79.52 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001072019685.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.896 kcal (2) G-P(sol) polarization free energy of solvation -81.211 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.685 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.687 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.524 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.372 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds