Wall clock time and date at job start Tue Mar 31 2020 22:12:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09005 * 109.58512 * 2 1 4 4 C 1.53185 * 109.59194 * 120.28495 * 2 1 3 5 5 C 1.53031 * 109.31745 * 174.56258 * 4 2 1 6 6 C 1.53040 * 109.53903 * 298.63651 * 5 4 2 7 7 H 1.08996 * 109.49540 * 301.41079 * 6 5 4 8 8 N 1.46504 * 109.49883 * 181.31441 * 6 5 4 9 9 C 1.34775 * 120.00114 * 154.99700 * 8 6 5 10 10 O 1.21502 * 119.99784 * 0.02562 * 9 8 6 11 11 C 1.48270 * 120.00241 * 179.97438 * 9 8 6 12 12 C 1.40279 * 119.24389 * 180.02562 * 11 9 8 13 13 C 1.36500 * 119.81441 * 179.97438 * 12 11 9 14 14 C 1.40754 * 118.24998 * 359.97438 * 13 12 11 15 15 C 1.40414 * 121.27695 * 180.02562 * 14 13 12 16 16 C 1.36132 * 119.64924 * 179.97438 * 15 14 13 17 17 C 1.39433 * 120.91502 * 0.02826 * 16 15 14 18 18 C 1.36003 * 121.08517 * 359.97434 * 17 16 15 19 19 C 1.40824 * 119.73412 * 359.97438 * 18 17 16 20 20 N 1.31883 * 119.23719 * 359.73064 * 11 9 8 21 21 C 1.53188 * 109.31254 * 61.36477 * 6 5 4 22 22 N 1.46923 * 108.77476 * 305.36346 * 21 6 5 23 23 C 1.36940 * 120.63187 * 233.62740 * 22 21 6 24 24 H 1.08004 * 119.99750 * 150.88317 * 23 22 21 25 25 C 1.38807 * 120.00313 * 330.89013 * 23 22 21 26 26 N 1.31618 * 120.00261 * 160.72765 * 25 23 22 27 27 Si 1.86804 * 119.99714 * 340.72628 * 25 23 22 28 28 H 1.48498 * 109.46932 * 92.33603 * 27 25 23 29 29 H 1.48497 * 109.46797 * 212.33544 * 27 25 23 30 30 H 1.48502 * 109.47149 * 332.33574 * 27 25 23 31 31 H 1.08999 * 109.47311 * 299.99831 * 1 2 3 32 32 H 1.09009 * 109.47278 * 59.99908 * 1 2 3 33 33 H 1.08999 * 109.47423 * 179.97438 * 1 2 3 34 34 H 1.09003 * 109.49763 * 294.52074 * 4 2 1 35 35 H 1.09007 * 109.49387 * 54.61173 * 4 2 1 36 36 H 1.08999 * 109.46021 * 58.65846 * 5 4 2 37 37 H 1.09000 * 109.46302 * 178.61417 * 5 4 2 38 38 H 0.97004 * 120.00012 * 335.00221 * 8 6 5 39 39 H 1.08000 * 120.09184 * 359.97438 * 12 11 9 40 40 H 1.08000 * 120.87464 * 179.97438 * 13 12 11 41 41 H 1.08002 * 120.17364 * 359.97061 * 15 14 13 42 42 H 1.08005 * 119.54135 * 180.02562 * 16 15 14 43 43 H 1.08003 * 119.45845 * 179.97438 * 17 16 15 44 44 H 1.07993 * 120.12980 * 180.02562 * 18 17 16 45 45 H 1.08999 * 109.58759 * 65.15182 * 21 6 5 46 46 H 1.08998 * 109.58904 * 185.43533 * 21 6 5 47 47 H 0.96999 * 120.00064 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8953 1.0270 0.0000 4 6 2.0436 -0.7278 1.2462 5 6 3.5678 -0.8434 1.1727 6 6 3.9603 -1.6608 -0.0601 7 1 3.5036 -2.6488 -0.0019 8 7 5.4180 -1.7975 -0.1124 9 6 5.9743 -2.8394 -0.7615 10 8 5.2668 -3.6652 -1.3036 11 6 7.4496 -2.9775 -0.8149 12 6 8.0116 -4.0679 -1.4952 13 6 9.3684 -4.2061 -1.5522 14 6 10.1643 -3.2344 -0.9170 15 6 11.5660 -3.3139 -0.9363 16 6 12.3036 -2.3554 -0.3114 17 6 11.6865 -1.2939 0.3493 18 6 10.3315 -1.1840 0.3890 19 6 9.5331 -2.1546 -0.2461 20 7 8.2033 -2.0691 -0.2267 21 6 3.4684 -0.9435 -1.3212 22 7 2.0253 -0.6990 -1.1937 23 6 1.1584 -1.1150 -2.1687 24 1 0.1413 -1.3730 -1.9126 25 6 1.5867 -1.2053 -3.4859 26 7 0.9166 -1.9416 -4.3468 27 14 3.1142 -0.2818 -4.0367 28 1 4.3011 -1.1641 -3.9031 29 1 2.9597 0.1287 -5.4554 30 1 3.2960 0.9241 -3.1894 31 1 -0.3634 0.5138 0.8900 32 1 -0.3634 0.5139 -0.8900 33 1 -0.3634 -1.0276 -0.0005 34 1 1.7638 -0.1655 2.1371 35 1 1.6049 -1.7246 1.2920 36 1 4.0045 0.1528 1.1021 37 1 3.9381 -1.3391 2.0701 38 1 5.9828 -1.1380 0.3202 39 1 7.3726 -4.7960 -1.9726 40 1 9.8193 -5.0392 -2.0709 41 1 12.0564 -4.1313 -1.4441 42 1 13.3817 -2.4181 -0.3277 43 1 12.2945 -0.5467 0.8376 44 1 9.8698 -0.3552 0.9049 45 1 3.9919 0.0065 -1.4289 46 1 3.6598 -1.5672 -2.1944 47 1 1.2162 -2.0050 -5.2672 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001072019686.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:12:40 Heat of formation + Delta-G solvation = 21.252301 kcal Electronic energy + Delta-G solvation = -29165.641609 eV Core-core repulsion = 25312.795406 eV Total energy + Delta-G solvation = -3852.846202 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -42.13281 -40.94520 -39.51646 -37.88698 -36.24800 -34.79819 -34.56264 -32.62752 -32.59833 -31.54429 -30.95304 -28.00878 -26.94868 -25.93395 -24.77870 -24.38247 -23.11820 -22.55779 -21.88487 -21.05358 -19.40478 -18.96556 -18.51178 -18.25191 -17.57998 -16.85819 -16.53420 -16.38561 -16.24742 -15.66160 -15.47949 -15.40153 -15.27297 -15.11134 -14.94012 -14.66074 -14.46351 -14.29754 -14.07337 -13.80825 -13.48123 -13.07791 -12.78086 -12.70972 -12.66210 -12.57146 -12.53803 -12.49195 -12.10553 -11.80646 -11.74937 -11.69939 -11.56747 -11.38792 -11.27606 -10.80392 -10.70302 -10.28718 -9.87212 -9.30873 -8.89680 -8.19044 -5.50150 -0.91608 -0.39997 0.87873 1.23171 1.26635 1.31375 1.36150 1.87446 2.15798 2.37283 2.83070 3.02920 3.06604 3.30728 3.52660 3.62329 3.76009 3.76800 3.84429 3.98247 4.07991 4.11564 4.21611 4.23333 4.34080 4.35880 4.47138 4.55881 4.65436 4.72256 4.79180 4.84017 4.84443 4.93534 4.99575 5.00933 5.05561 5.07440 5.13301 5.22909 5.33978 5.35057 5.40185 5.46333 5.50653 5.62498 5.83074 5.88988 6.16554 6.27353 6.61144 6.89886 7.04156 7.62167 8.02168 9.00670 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.015377 B = 0.003081 C = 0.002827 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1820.437404 B = 9087.050746 C = 9903.847196 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.156 3.844 3 H 0.046 0.954 4 C -0.119 4.119 5 C -0.107 4.107 6 C 0.134 3.866 7 H 0.062 0.938 8 N -0.692 5.692 9 C 0.556 3.444 10 O -0.568 6.568 11 C 0.097 3.903 12 C -0.149 4.149 13 C -0.046 4.046 14 C -0.101 4.101 15 C -0.103 4.103 16 C -0.101 4.101 17 C -0.091 4.091 18 C -0.106 4.106 19 C 0.096 3.904 20 N -0.453 5.453 21 C 0.122 3.878 22 N -0.612 5.612 23 C -0.233 4.233 24 H 0.072 0.928 25 C -0.033 4.033 26 N -0.956 5.956 27 Si 0.935 3.065 28 H -0.302 1.302 29 H -0.307 1.307 30 H -0.256 1.256 31 H 0.085 0.915 32 H 0.039 0.961 33 H 0.038 0.962 34 H 0.105 0.895 35 H 0.051 0.949 36 H 0.082 0.918 37 H 0.089 0.911 38 H 0.419 0.581 39 H 0.142 0.858 40 H 0.183 0.817 41 H 0.163 0.837 42 H 0.166 0.834 43 H 0.164 0.836 44 H 0.144 0.856 45 H 0.031 0.969 46 H 0.034 0.966 47 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 26.394 1.676 15.166 30.487 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.052 3.948 3 H 0.063 0.937 4 C -0.158 4.158 5 C -0.145 4.145 6 C 0.028 3.972 7 H 0.080 0.920 8 N -0.343 5.343 9 C 0.341 3.659 10 O -0.446 6.446 11 C -0.055 4.055 12 C -0.170 4.170 13 C -0.072 4.072 14 C -0.103 4.103 15 C -0.121 4.121 16 C -0.119 4.119 17 C -0.110 4.110 18 C -0.125 4.125 19 C -0.028 4.028 20 N -0.166 5.166 21 C -0.005 4.005 22 N -0.337 5.337 23 C -0.363 4.363 24 H 0.089 0.911 25 C -0.228 4.228 26 N -0.602 5.602 27 Si 0.766 3.234 28 H -0.231 1.231 29 H -0.236 1.236 30 H -0.180 1.180 31 H 0.104 0.896 32 H 0.058 0.942 33 H 0.058 0.942 34 H 0.123 0.877 35 H 0.070 0.930 36 H 0.101 0.899 37 H 0.107 0.893 38 H 0.257 0.743 39 H 0.160 0.840 40 H 0.201 0.799 41 H 0.180 0.820 42 H 0.183 0.817 43 H 0.181 0.819 44 H 0.162 0.838 45 H 0.048 0.952 46 H 0.052 0.948 47 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 25.474 1.842 15.125 29.683 hybrid contribution 0.560 -0.427 -1.550 1.702 sum 26.035 1.415 13.576 29.396 Atomic orbital electron populations 1.21753 0.94623 1.01063 1.01406 1.20909 0.94399 0.94042 0.85489 0.93664 1.21970 0.94165 1.01160 0.98500 1.21678 0.97247 1.00255 0.95340 1.21526 0.78540 0.99945 0.97233 0.91991 1.45844 1.07872 1.26486 1.54115 1.18490 0.87239 0.81715 0.78468 1.90818 1.63275 1.43797 1.46691 1.21090 0.92640 0.93822 0.97984 1.21814 0.97249 0.98300 0.99644 1.21864 0.91789 0.98328 0.95196 1.19321 0.96655 0.95564 0.98770 1.21387 0.90382 1.00802 0.99537 1.21508 1.02305 0.92997 0.95072 1.21396 0.93697 0.98650 0.97303 1.21095 0.94131 0.97978 0.99268 1.19364 0.88701 0.96118 0.98587 1.67709 1.06734 1.25538 1.16570 1.21582 0.85343 0.96675 0.96896 1.44573 1.01427 1.66307 1.21442 1.18933 0.95400 1.35697 0.86293 0.91062 1.25847 1.00122 1.00254 0.96531 1.69926 1.43603 1.41842 1.04869 0.86074 0.80628 0.80379 0.76323 1.23111 1.23619 1.17975 0.89596 0.94223 0.94239 0.87686 0.92977 0.89907 0.89279 0.74294 0.83992 0.79926 0.81981 0.81696 0.81861 0.83818 0.95163 0.94794 0.93271 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.70 7.95 71.98 0.57 -4.12 16 2 C 0.16 5.84 3.49 44.97 0.16 5.99 16 3 H 0.05 1.61 8.14 -2.38 -0.02 1.59 16 4 C -0.12 -3.48 5.37 30.67 0.16 -3.32 16 5 C -0.11 -3.01 5.35 30.62 0.16 -2.84 16 6 C 0.13 5.14 2.60 45.07 0.12 5.26 16 7 H 0.06 2.79 7.58 -2.39 -0.02 2.77 16 8 N -0.69 -24.05 5.07 -444.64 -2.25 -26.30 16 9 C 0.56 21.74 7.78 86.91 0.68 22.42 16 10 O -0.57 -27.28 15.94 -3.72 -0.06 -27.34 16 11 C 0.10 3.14 6.75 42.30 0.29 3.42 16 12 C -0.15 -4.14 9.54 22.36 0.21 -3.92 16 13 C -0.05 -0.90 9.88 22.48 0.22 -0.68 16 14 C -0.10 -1.94 5.75 -21.22 -0.12 -2.07 16 15 C -0.10 -1.17 9.77 22.31 0.22 -0.95 16 16 C -0.10 -0.84 9.96 22.07 0.22 -0.62 16 17 C -0.09 -0.91 9.94 22.04 0.22 -0.69 16 18 C -0.11 -1.77 9.99 22.38 0.22 -1.55 16 19 C 0.10 2.24 6.61 40.47 0.27 2.50 16 20 N -0.45 -12.89 9.47 -177.77 -1.68 -14.58 16 21 C 0.12 5.76 3.77 86.36 0.33 6.08 16 22 N -0.61 -30.02 2.75 -675.25 -1.86 -31.87 16 23 C -0.23 -13.75 9.05 84.03 0.76 -12.99 16 24 H 0.07 4.43 6.40 -2.91 -0.02 4.41 16 25 C -0.03 -2.08 5.24 84.86 0.44 -1.63 16 26 N -0.96 -64.02 13.97 21.65 0.30 -63.72 16 27 Si 0.93 51.70 24.34 68.60 1.67 53.37 16 28 H -0.30 -17.26 6.63 99.48 0.66 -16.60 16 29 H -0.31 -16.93 7.11 99.48 0.71 -16.22 16 30 H -0.26 -13.20 6.63 99.48 0.66 -12.54 16 31 H 0.09 2.29 8.14 -2.39 -0.02 2.27 16 32 H 0.04 1.59 7.65 -2.38 -0.02 1.57 16 33 H 0.04 1.54 7.43 -2.39 -0.02 1.52 16 34 H 0.10 2.24 8.14 -2.39 -0.02 2.22 16 35 H 0.05 1.69 8.14 -2.38 -0.02 1.68 16 36 H 0.08 2.04 8.14 -2.39 -0.02 2.02 16 37 H 0.09 2.04 8.14 -2.39 -0.02 2.02 16 38 H 0.42 11.95 7.91 -92.71 -0.73 11.22 16 39 H 0.14 4.08 7.60 -2.91 -0.02 4.06 16 40 H 0.18 2.01 8.06 -2.91 -0.02 1.99 16 41 H 0.16 0.83 8.06 -2.91 -0.02 0.81 16 42 H 0.17 0.23 8.06 -2.91 -0.02 0.21 16 43 H 0.16 0.58 8.06 -2.91 -0.02 0.56 16 44 H 0.14 2.10 8.06 -2.91 -0.02 2.07 16 45 H 0.03 1.39 7.03 -2.39 -0.02 1.37 16 46 H 0.03 1.92 4.62 -2.39 -0.01 1.91 16 47 H 0.26 16.62 8.31 -92.71 -0.77 15.84 16 Total: -1.00 -84.82 374.36 1.42 -83.40 By element: Atomic # 1 Polarization: 16.57 SS G_CDS: 0.17 Total: 16.74 kcal Atomic # 6 Polarization: 5.17 SS G_CDS: 5.13 Total: 10.30 kcal Atomic # 7 Polarization: -130.97 SS G_CDS: -5.49 Total: -136.46 kcal Atomic # 8 Polarization: -27.28 SS G_CDS: -0.06 Total: -27.34 kcal Atomic # 14 Polarization: 51.70 SS G_CDS: 1.67 Total: 53.37 kcal Total: -84.82 1.42 -83.40 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001072019686.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.652 kcal (2) G-P(sol) polarization free energy of solvation -84.816 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.836 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.416 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.400 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.252 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds