Wall clock time and date at job start Tue Mar 31 2020 22:13:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09003 * 109.58245 * 2 1 4 4 C 1.53196 * 109.58493 * 120.27312 * 2 1 3 5 5 C 1.53042 * 109.31339 * 174.42323 * 4 2 1 6 6 C 1.53038 * 109.53700 * 298.63992 * 5 4 2 7 7 H 1.09003 * 109.49235 * 181.34733 * 6 5 4 8 8 N 1.46497 * 109.49947 * 301.40893 * 6 5 4 9 9 C 1.34770 * 119.99856 * 204.93659 * 8 6 5 10 10 O 1.21603 * 120.00432 * 0.02562 * 9 8 6 11 11 C 1.47453 * 119.99929 * 180.02562 * 9 8 6 12 12 C 1.38871 * 120.45917 * 5.64822 * 11 9 8 13 13 C 1.38895 * 120.67540 * 180.23193 * 12 11 9 14 14 C 1.36371 * 121.27424 * 359.47627 * 13 12 11 15 15 C 1.40400 * 119.98279 * 0.51665 * 14 13 12 16 16 C 1.40472 * 121.94638 * 179.70531 * 15 14 13 17 17 N 1.31274 * 119.87904 * 180.02562 * 16 15 14 18 18 C 1.32546 * 122.73493 * 0.02562 * 17 16 15 19 19 C 1.36334 * 121.82268 * 0.02562 * 18 17 16 20 20 C 1.40290 * 118.69927 * 359.97438 * 19 18 17 21 21 C 1.53191 * 109.34022 * 61.38157 * 6 5 4 22 22 N 1.46925 * 109.59247 * 239.56909 * 2 1 3 23 23 C 1.36932 * 120.62736 * 6.62501 * 22 2 1 24 24 H 1.08002 * 120.00385 * 325.66593 * 23 22 2 25 25 C 1.38815 * 120.00069 * 145.66860 * 23 22 2 26 26 N 1.31622 * 119.99586 * 346.22344 * 25 23 22 27 27 Si 1.86797 * 120.00245 * 166.23097 * 25 23 22 28 28 H 1.48495 * 109.47292 * 59.99605 * 27 25 23 29 29 H 1.48506 * 109.47125 * 180.02562 * 27 25 23 30 30 H 1.48504 * 109.46832 * 299.99691 * 27 25 23 31 31 H 1.08990 * 109.47691 * 299.72223 * 1 2 3 32 32 H 1.09005 * 109.46638 * 59.72584 * 1 2 3 33 33 H 1.09001 * 109.46857 * 179.71483 * 1 2 3 34 34 H 1.09005 * 109.49409 * 54.47922 * 4 2 1 35 35 H 1.09000 * 109.50248 * 294.38123 * 4 2 1 36 36 H 1.08999 * 109.45729 * 178.61900 * 5 4 2 37 37 H 1.09003 * 109.44637 * 58.65466 * 5 4 2 38 38 H 0.97005 * 119.99840 * 24.94297 * 8 6 5 39 39 H 1.07994 * 119.65984 * 359.95278 * 12 11 9 40 40 H 1.08006 * 119.36046 * 179.74143 * 13 12 11 41 41 H 1.08002 * 120.00815 * 180.26237 * 14 13 12 42 42 H 1.07997 * 120.05806 * 0.04645 * 16 15 14 43 43 H 1.08005 * 119.09169 * 180.02562 * 18 17 16 44 44 H 1.07997 * 120.64827 * 179.97438 * 19 18 17 45 45 H 1.09003 * 109.58960 * 65.13494 * 21 6 5 46 46 H 1.09000 * 109.58834 * 185.55394 * 21 6 5 47 47 H 0.96998 * 119.99935 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8953 1.0270 0.0000 4 6 2.0435 -0.7276 1.2465 5 6 3.5675 -0.8463 1.1715 6 6 3.9569 -1.6657 -0.0610 7 1 5.0412 -1.7701 -0.1007 8 7 3.3406 -2.9923 0.0190 9 6 3.8965 -4.0339 -0.6310 10 8 4.9099 -3.8727 -1.2835 11 6 3.2759 -5.3690 -0.5509 12 6 2.0577 -5.5416 0.0931 13 6 1.4714 -6.7981 0.1753 14 6 2.0643 -7.8937 -0.3793 15 6 3.2966 -7.7656 -1.0400 16 6 3.9467 -8.8672 -1.6206 17 7 5.0983 -8.7012 -2.2283 18 6 5.6943 -7.5212 -2.3248 19 6 5.1444 -6.3925 -1.7933 20 6 3.9133 -6.4918 -1.1281 21 6 3.4658 -0.9490 -1.3227 22 7 2.0227 -0.7011 -1.1935 23 6 1.1539 -1.1155 -2.1674 24 1 0.1629 -1.4513 -1.8999 25 6 1.5470 -1.1043 -3.4987 26 7 2.6326 -0.4529 -3.8588 27 14 0.5352 -2.0132 -4.7791 28 1 -0.8419 -1.4584 -4.8070 29 1 1.1632 -1.8481 -6.1147 30 1 0.4806 -3.4564 -4.4335 31 1 -0.3634 0.5094 0.8923 32 1 -0.3633 0.5181 -0.8876 33 1 -0.3633 -1.0277 -0.0051 34 1 1.6030 -1.7236 1.2937 35 1 1.7659 -0.1639 2.1372 36 1 3.9377 -1.3420 2.0689 37 1 4.0059 0.1490 1.0992 38 1 2.5324 -3.1210 0.5398 39 1 1.5633 -4.6909 0.5383 40 1 0.5255 -6.9087 0.6848 41 1 1.5882 -8.8604 -0.3069 42 1 3.4996 -9.8489 -1.5674 43 1 6.6418 -7.4519 -2.8386 44 1 5.6468 -5.4407 -1.8827 45 1 3.9910 -0.0001 -1.4319 46 1 3.6531 -1.5751 -2.1950 47 1 2.9075 -0.4453 -4.7890 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001072082335.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:13:46 Heat of formation + Delta-G solvation = 44.418975 kcal Electronic energy + Delta-G solvation = -30290.969287 eV Core-core repulsion = 26439.127667 eV Total energy + Delta-G solvation = -3851.841620 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -40.98168 -39.41122 -37.72162 -37.03209 -34.27945 -32.82264 -32.78336 -31.51475 -30.64828 -29.99201 -29.37138 -26.27965 -25.05839 -24.54063 -23.48012 -23.21200 -22.22530 -20.77932 -20.42694 -18.89213 -18.06336 -17.76463 -16.50137 -16.38104 -16.10151 -15.40723 -15.18962 -14.97201 -14.62390 -14.34913 -14.11801 -13.86022 -13.82342 -13.63472 -13.32810 -13.11048 -12.85885 -12.56584 -12.54130 -12.09625 -12.01869 -11.87363 -11.59649 -11.25565 -11.18001 -11.00235 -10.92331 -10.73881 -10.43737 -10.37986 -10.11015 -10.01228 -9.75213 -9.56502 -9.50847 -9.14281 -9.06585 -8.51112 -8.46635 -8.03942 -6.56084 -5.78214 -3.27330 0.14803 0.87572 1.73864 2.79040 3.36313 3.42932 3.44274 3.46993 3.59785 4.17181 4.43949 4.47771 4.57065 4.63255 4.73654 4.88764 4.98811 5.08276 5.27038 5.30932 5.35527 5.40605 5.46314 5.54304 5.58665 5.70041 5.87386 5.94764 5.95952 5.98741 6.07706 6.11519 6.18836 6.28282 6.32210 6.37766 6.40517 6.46161 6.55513 6.60266 6.68803 6.77078 6.87482 7.03761 7.09073 7.32494 7.60219 7.81638 7.96982 7.99033 8.49048 8.65622 9.21198 9.84128 10.43400 11.29685 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.011044 B = 0.004331 C = 0.003895 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2534.706528 B = 6462.789573 C = 7186.083978 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.165 3.835 3 H 0.025 0.975 4 C -0.130 4.130 5 C -0.119 4.119 6 C 0.117 3.883 7 H 0.078 0.922 8 N -0.690 5.690 9 C 0.559 3.441 10 O -0.539 6.539 11 C -0.114 4.114 12 C -0.059 4.059 13 C -0.126 4.126 14 C -0.069 4.069 15 C -0.119 4.119 16 C 0.134 3.866 17 N -0.489 5.489 18 C 0.065 3.935 19 C -0.146 4.146 20 C 0.009 3.991 21 C 0.166 3.834 22 N -0.581 5.581 23 C -0.255 4.255 24 H 0.064 0.936 25 C 0.013 3.987 26 N -0.896 5.896 27 Si 0.894 3.106 28 H -0.282 1.282 29 H -0.290 1.290 30 H -0.284 1.284 31 H 0.036 0.964 32 H 0.061 0.939 33 H 0.050 0.950 34 H 0.052 0.948 35 H 0.054 0.946 36 H 0.052 0.948 37 H 0.072 0.928 38 H 0.395 0.605 39 H 0.132 0.868 40 H 0.132 0.868 41 H 0.135 0.865 42 H 0.161 0.839 43 H 0.153 0.847 44 H 0.178 0.822 45 H 0.028 0.972 46 H 0.088 0.912 47 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.641 -10.820 11.981 16.156 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.058 3.942 3 H 0.043 0.957 4 C -0.170 4.170 5 C -0.157 4.157 6 C 0.012 3.988 7 H 0.096 0.904 8 N -0.339 5.339 9 C 0.346 3.654 10 O -0.419 6.419 11 C -0.117 4.117 12 C -0.079 4.079 13 C -0.144 4.144 14 C -0.089 4.089 15 C -0.121 4.121 16 C -0.038 4.038 17 N -0.196 5.196 18 C -0.078 4.078 19 C -0.165 4.165 20 C 0.003 3.997 21 C 0.039 3.961 22 N -0.304 5.304 23 C -0.385 4.385 24 H 0.081 0.919 25 C -0.187 4.187 26 N -0.539 5.539 27 Si 0.724 3.276 28 H -0.208 1.208 29 H -0.216 1.216 30 H -0.211 1.211 31 H 0.055 0.945 32 H 0.080 0.920 33 H 0.069 0.931 34 H 0.071 0.929 35 H 0.072 0.928 36 H 0.070 0.930 37 H 0.091 0.909 38 H 0.231 0.769 39 H 0.150 0.850 40 H 0.150 0.850 41 H 0.153 0.847 42 H 0.178 0.822 43 H 0.170 0.830 44 H 0.195 0.805 45 H 0.046 0.954 46 H 0.106 0.894 47 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 0.693 -11.234 10.911 15.676 hybrid contribution -1.461 0.273 -0.233 1.505 sum -0.768 -10.961 10.678 15.321 Atomic orbital electron populations 1.21776 0.96091 1.01156 1.00150 1.20474 0.92913 0.93640 0.87130 0.95750 1.22077 0.95103 1.00547 0.99267 1.21692 0.97068 1.00229 0.96687 1.21846 0.97055 0.81450 0.98470 0.90401 1.45785 1.29121 1.08560 1.50474 1.17854 0.84111 0.83759 0.79635 1.90562 1.25450 1.84421 1.41451 1.20028 0.96434 0.93612 1.01602 1.21521 0.93402 0.97879 0.95104 1.20827 1.00606 0.92230 1.00772 1.21112 0.93359 0.99368 0.95071 1.19009 0.96902 0.94360 1.01849 1.23102 0.90736 0.97545 0.92388 1.67359 1.10049 1.26979 1.15261 1.22315 0.99817 0.87527 0.98129 1.23027 0.95084 1.02631 0.95710 1.17960 0.94461 0.91701 0.95560 1.21114 0.84136 0.96899 0.93946 1.43987 1.02505 1.64670 1.19265 1.18923 0.97071 1.37207 0.85301 0.91889 1.25174 0.97723 0.98459 0.97331 1.69963 1.25418 1.41927 1.16551 0.86519 0.79778 0.80039 0.81290 1.20846 1.21617 1.21083 0.94495 0.92006 0.93070 0.92910 0.92773 0.92976 0.90931 0.76937 0.85007 0.84966 0.84744 0.82173 0.82973 0.80512 0.95398 0.89395 0.93557 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.35 7.99 37.16 0.30 -2.05 16 2 C 0.17 3.13 3.50 -67.60 -0.24 2.89 16 3 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 4 C -0.13 -1.96 5.21 -26.61 -0.14 -2.10 16 5 C -0.12 -1.77 5.59 -26.69 -0.15 -1.92 16 6 C 0.12 2.13 2.81 -67.81 -0.19 1.94 16 7 H 0.08 1.45 7.58 -51.93 -0.39 1.05 16 8 N -0.69 -11.79 4.87 -54.76 -0.27 -12.06 16 9 C 0.56 10.37 7.70 -12.51 -0.10 10.28 16 10 O -0.54 -11.43 13.16 5.28 0.07 -11.36 16 11 C -0.11 -1.84 5.90 -104.70 -0.62 -2.45 16 12 C -0.06 -0.76 9.52 -39.10 -0.37 -1.13 16 13 C -0.13 -1.33 9.92 -40.01 -0.40 -1.73 16 14 C -0.07 -0.72 9.79 -39.44 -0.39 -1.10 16 15 C -0.12 -1.59 5.74 -106.88 -0.61 -2.20 16 16 C 0.13 1.66 11.05 -16.95 -0.19 1.47 16 17 N -0.49 -7.04 10.30 -13.11 -0.14 -7.18 16 18 C 0.06 0.95 11.07 -17.93 -0.20 0.75 16 19 C -0.15 -2.38 9.28 -39.50 -0.37 -2.75 16 20 C 0.01 0.15 5.77 -106.55 -0.61 -0.47 16 21 C 0.17 3.82 4.85 -3.68 -0.02 3.80 16 22 N -0.58 -13.36 2.88 -164.72 -0.47 -13.83 16 23 C -0.26 -6.58 8.43 -15.06 -0.13 -6.70 16 24 H 0.06 1.59 6.38 -52.49 -0.33 1.26 16 25 C 0.01 0.36 4.95 -17.43 -0.09 0.28 16 26 N -0.90 -26.03 11.48 55.49 0.64 -25.39 16 27 Si 0.89 21.95 29.58 -169.99 -5.03 16.93 16 28 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 29 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 30 H -0.28 -7.03 7.11 56.52 0.40 -6.63 16 31 H 0.04 0.53 8.14 -51.93 -0.42 0.11 16 32 H 0.06 1.21 7.70 -51.93 -0.40 0.81 16 33 H 0.05 0.89 7.38 -51.93 -0.38 0.51 16 34 H 0.05 0.76 6.40 -51.93 -0.33 0.43 16 35 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 36 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 37 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 38 H 0.39 5.93 4.84 -40.82 -0.20 5.73 16 39 H 0.13 1.49 6.42 -52.49 -0.34 1.15 16 40 H 0.13 0.98 8.06 -52.48 -0.42 0.56 16 41 H 0.13 0.91 8.06 -52.49 -0.42 0.49 16 42 H 0.16 1.36 8.06 -52.49 -0.42 0.94 16 43 H 0.15 1.85 8.06 -52.48 -0.42 1.43 16 44 H 0.18 3.16 5.06 -52.49 -0.27 2.89 16 45 H 0.03 0.69 8.14 -51.93 -0.42 0.26 16 46 H 0.09 2.41 6.45 -51.93 -0.34 2.07 16 47 H 0.25 7.30 8.31 -40.82 -0.34 6.96 16 LS Contribution 370.24 15.07 5.58 5.58 Total: -1.00 -32.03 370.24 -10.46 -42.49 By element: Atomic # 1 Polarization: 14.37 SS G_CDS: -6.34 Total: 8.03 kcal Atomic # 6 Polarization: 1.30 SS G_CDS: -4.50 Total: -3.20 kcal Atomic # 7 Polarization: -58.22 SS G_CDS: -0.24 Total: -58.46 kcal Atomic # 8 Polarization: -11.43 SS G_CDS: 0.07 Total: -11.36 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -5.03 Total: 16.93 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -32.03 -10.46 -42.49 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001072082335.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.906 kcal (2) G-P(sol) polarization free energy of solvation -32.029 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.877 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.458 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.487 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.419 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds