Wall clock time and date at job start Tue Mar 31 2020 22:13:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09003 * 109.58245 * 2 1 4 4 C 1.53196 * 109.58493 * 120.27312 * 2 1 3 5 5 C 1.53042 * 109.31339 * 174.42323 * 4 2 1 6 6 C 1.53038 * 109.53700 * 298.63992 * 5 4 2 7 7 H 1.09003 * 109.49235 * 181.34733 * 6 5 4 8 8 N 1.46497 * 109.49947 * 301.40893 * 6 5 4 9 9 C 1.34770 * 119.99856 * 204.93659 * 8 6 5 10 10 O 1.21603 * 120.00432 * 0.02562 * 9 8 6 11 11 C 1.47453 * 119.99929 * 180.02562 * 9 8 6 12 12 C 1.38871 * 120.45917 * 5.64822 * 11 9 8 13 13 C 1.38895 * 120.67540 * 180.23193 * 12 11 9 14 14 C 1.36371 * 121.27424 * 359.47627 * 13 12 11 15 15 C 1.40400 * 119.98279 * 0.51665 * 14 13 12 16 16 C 1.40472 * 121.94638 * 179.70531 * 15 14 13 17 17 N 1.31274 * 119.87904 * 180.02562 * 16 15 14 18 18 C 1.32546 * 122.73493 * 0.02562 * 17 16 15 19 19 C 1.36334 * 121.82268 * 0.02562 * 18 17 16 20 20 C 1.40290 * 118.69927 * 359.97438 * 19 18 17 21 21 C 1.53191 * 109.34022 * 61.38157 * 6 5 4 22 22 N 1.46925 * 109.59247 * 239.56909 * 2 1 3 23 23 C 1.36932 * 120.62736 * 6.62501 * 22 2 1 24 24 H 1.08002 * 120.00385 * 325.66593 * 23 22 2 25 25 C 1.38815 * 120.00069 * 145.66860 * 23 22 2 26 26 N 1.31622 * 119.99586 * 346.22344 * 25 23 22 27 27 Si 1.86797 * 120.00245 * 166.23097 * 25 23 22 28 28 H 1.48495 * 109.47292 * 59.99605 * 27 25 23 29 29 H 1.48506 * 109.47125 * 180.02562 * 27 25 23 30 30 H 1.48504 * 109.46832 * 299.99691 * 27 25 23 31 31 H 1.08990 * 109.47691 * 299.72223 * 1 2 3 32 32 H 1.09005 * 109.46638 * 59.72584 * 1 2 3 33 33 H 1.09001 * 109.46857 * 179.71483 * 1 2 3 34 34 H 1.09005 * 109.49409 * 54.47922 * 4 2 1 35 35 H 1.09000 * 109.50248 * 294.38123 * 4 2 1 36 36 H 1.08999 * 109.45729 * 178.61900 * 5 4 2 37 37 H 1.09003 * 109.44637 * 58.65466 * 5 4 2 38 38 H 0.97005 * 119.99840 * 24.94297 * 8 6 5 39 39 H 1.07994 * 119.65984 * 359.95278 * 12 11 9 40 40 H 1.08006 * 119.36046 * 179.74143 * 13 12 11 41 41 H 1.08002 * 120.00815 * 180.26237 * 14 13 12 42 42 H 1.07997 * 120.05806 * 0.04645 * 16 15 14 43 43 H 1.08005 * 119.09169 * 180.02562 * 18 17 16 44 44 H 1.07997 * 120.64827 * 179.97438 * 19 18 17 45 45 H 1.09003 * 109.58960 * 65.13494 * 21 6 5 46 46 H 1.09000 * 109.58834 * 185.55394 * 21 6 5 47 47 H 0.96998 * 119.99935 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8953 1.0270 0.0000 4 6 2.0435 -0.7276 1.2465 5 6 3.5675 -0.8463 1.1715 6 6 3.9569 -1.6657 -0.0610 7 1 5.0412 -1.7701 -0.1007 8 7 3.3406 -2.9923 0.0190 9 6 3.8965 -4.0339 -0.6310 10 8 4.9099 -3.8727 -1.2835 11 6 3.2759 -5.3690 -0.5509 12 6 2.0577 -5.5416 0.0931 13 6 1.4714 -6.7981 0.1753 14 6 2.0643 -7.8937 -0.3793 15 6 3.2966 -7.7656 -1.0400 16 6 3.9467 -8.8672 -1.6206 17 7 5.0983 -8.7012 -2.2283 18 6 5.6943 -7.5212 -2.3248 19 6 5.1444 -6.3925 -1.7933 20 6 3.9133 -6.4918 -1.1281 21 6 3.4658 -0.9490 -1.3227 22 7 2.0227 -0.7011 -1.1935 23 6 1.1539 -1.1155 -2.1674 24 1 0.1629 -1.4513 -1.8999 25 6 1.5470 -1.1043 -3.4987 26 7 2.6326 -0.4529 -3.8588 27 14 0.5352 -2.0132 -4.7791 28 1 -0.8419 -1.4584 -4.8070 29 1 1.1632 -1.8481 -6.1147 30 1 0.4806 -3.4564 -4.4335 31 1 -0.3634 0.5094 0.8923 32 1 -0.3633 0.5181 -0.8876 33 1 -0.3633 -1.0277 -0.0051 34 1 1.6030 -1.7236 1.2937 35 1 1.7659 -0.1639 2.1372 36 1 3.9377 -1.3420 2.0689 37 1 4.0059 0.1490 1.0992 38 1 2.5324 -3.1210 0.5398 39 1 1.5633 -4.6909 0.5383 40 1 0.5255 -6.9087 0.6848 41 1 1.5882 -8.8604 -0.3069 42 1 3.4996 -9.8489 -1.5674 43 1 6.6418 -7.4519 -2.8386 44 1 5.6468 -5.4407 -1.8827 45 1 3.9910 -0.0001 -1.4319 46 1 3.6531 -1.5751 -2.1950 47 1 2.9075 -0.4453 -4.7890 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001072082335.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:13:45 Heat of formation + Delta-G solvation = 24.355109 kcal Electronic energy + Delta-G solvation = -30291.839322 eV Core-core repulsion = 26439.127667 eV Total energy + Delta-G solvation = -3852.711655 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.29 seconds Orbital eigenvalues (eV) -42.07360 -40.77937 -39.17960 -38.10348 -35.87477 -34.52814 -33.89453 -32.75465 -31.85686 -31.73782 -30.50313 -27.87266 -26.79551 -25.61304 -24.57901 -24.31450 -23.87721 -22.17673 -21.81784 -20.46064 -19.17764 -18.85738 -18.17391 -17.57289 -17.28263 -17.01224 -16.63378 -16.15993 -16.04263 -15.77764 -15.56938 -15.25137 -15.13282 -14.82913 -14.70081 -14.43305 -14.29589 -14.03721 -13.65225 -13.53558 -13.04920 -13.01512 -12.89174 -12.86019 -12.68888 -12.59262 -12.56958 -12.45301 -12.17761 -12.08797 -11.58223 -11.23290 -11.16776 -11.07265 -10.92646 -10.54998 -10.31372 -10.15247 -9.99567 -9.09662 -8.52187 -7.84231 -5.34472 -0.86194 -0.13568 0.64524 1.36982 1.40724 1.44918 1.75755 2.18581 2.33204 2.47276 3.10236 3.32151 3.49139 3.57016 3.62375 3.65398 3.80309 3.91475 3.93493 4.02980 4.09656 4.16605 4.21558 4.40295 4.48135 4.55924 4.66211 4.72448 4.75287 4.79759 4.86326 4.92843 4.97842 5.03928 5.07057 5.11145 5.12263 5.27139 5.27910 5.31044 5.38296 5.57612 5.60567 5.62377 5.69992 5.71590 5.74443 5.80499 6.44897 6.61743 6.94337 7.18146 7.30490 7.90769 8.44542 9.20417 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.011044 B = 0.004331 C = 0.003895 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2534.706528 B = 6462.789573 C = 7186.083978 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C 0.154 3.846 3 H 0.011 0.989 4 C -0.119 4.119 5 C -0.110 4.110 6 C 0.128 3.872 7 H 0.065 0.935 8 N -0.682 5.682 9 C 0.550 3.450 10 O -0.582 6.582 11 C -0.161 4.161 12 C -0.042 4.042 13 C -0.130 4.130 14 C -0.043 4.043 15 C -0.137 4.137 16 C 0.151 3.849 17 N -0.512 5.512 18 C 0.067 3.933 19 C -0.184 4.184 20 C -0.011 4.011 21 C 0.177 3.823 22 N -0.592 5.592 23 C -0.236 4.236 24 H 0.075 0.925 25 C -0.050 4.050 26 N -0.936 5.936 27 Si 0.946 3.054 28 H -0.266 1.266 29 H -0.305 1.305 30 H -0.285 1.285 31 H 0.075 0.925 32 H 0.032 0.968 33 H 0.054 0.946 34 H 0.065 0.935 35 H 0.092 0.908 36 H 0.086 0.914 37 H 0.073 0.927 38 H 0.407 0.593 39 H 0.148 0.852 40 H 0.177 0.823 41 H 0.185 0.815 42 H 0.209 0.791 43 H 0.164 0.836 44 H 0.148 0.852 45 H -0.003 1.003 46 H 0.035 0.965 47 H 0.242 0.758 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.263 -13.651 15.552 21.128 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.048 3.952 3 H 0.029 0.971 4 C -0.158 4.158 5 C -0.148 4.148 6 C 0.022 3.978 7 H 0.083 0.917 8 N -0.332 5.332 9 C 0.339 3.661 10 O -0.464 6.464 11 C -0.164 4.164 12 C -0.062 4.062 13 C -0.147 4.147 14 C -0.063 4.063 15 C -0.139 4.139 16 C -0.021 4.021 17 N -0.221 5.221 18 C -0.075 4.075 19 C -0.204 4.204 20 C -0.017 4.017 21 C 0.050 3.950 22 N -0.316 5.316 23 C -0.367 4.367 24 H 0.092 0.908 25 C -0.245 4.245 26 N -0.582 5.582 27 Si 0.776 3.224 28 H -0.191 1.191 29 H -0.232 1.232 30 H -0.212 1.212 31 H 0.094 0.906 32 H 0.051 0.949 33 H 0.073 0.927 34 H 0.084 0.916 35 H 0.110 0.890 36 H 0.105 0.895 37 H 0.091 0.909 38 H 0.245 0.755 39 H 0.165 0.835 40 H 0.194 0.806 41 H 0.203 0.797 42 H 0.225 0.775 43 H 0.181 0.819 44 H 0.165 0.835 45 H 0.015 0.985 46 H 0.054 0.946 47 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges -2.975 -14.061 14.538 20.443 hybrid contribution -0.406 1.099 -1.267 1.725 sum -3.381 -12.962 13.272 18.857 Atomic orbital electron populations 1.21706 0.94552 1.01474 1.00697 1.20784 0.94272 0.93090 0.87006 0.97139 1.21966 0.94483 1.01165 0.98136 1.21669 0.97535 0.99831 0.95800 1.21520 0.96348 0.82204 0.97770 0.91690 1.45639 1.29470 1.07673 1.50424 1.18478 0.83716 0.85180 0.78746 1.90554 1.27433 1.85315 1.43141 1.19893 0.98675 0.92149 1.05652 1.21882 0.91618 0.99953 0.92790 1.21318 1.01969 0.90805 1.00647 1.21711 0.91269 1.01605 0.91712 1.19353 0.98408 0.93214 1.02929 1.23929 0.89477 0.99112 0.89578 1.67465 1.11464 1.26217 1.16908 1.22467 1.00183 0.87427 0.97416 1.22819 0.96658 1.02086 0.98790 1.18232 0.94467 0.93316 0.95640 1.20756 0.84630 0.94959 0.94642 1.44200 1.01937 1.65383 1.20122 1.19280 0.97315 1.34545 0.85574 0.90775 1.25859 0.98985 1.00230 0.99448 1.70138 1.27582 1.44663 1.15806 0.85660 0.79171 0.78885 0.78729 1.19112 1.23225 1.21194 0.90609 0.94895 0.92712 0.91636 0.88990 0.89532 0.90869 0.75498 0.83457 0.80593 0.79733 0.77485 0.81920 0.83462 0.98492 0.94620 0.94886 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.10 7.99 71.98 0.58 -3.52 16 2 C 0.15 5.60 3.50 44.98 0.16 5.76 16 3 H 0.01 0.43 8.14 -2.39 -0.02 0.41 16 4 C -0.12 -3.13 5.21 30.67 0.16 -2.97 16 5 C -0.11 -3.07 5.59 30.62 0.17 -2.90 16 6 C 0.13 4.79 2.81 45.07 0.13 4.91 16 7 H 0.07 2.59 7.58 -2.39 -0.02 2.57 16 8 N -0.68 -23.55 4.87 -445.42 -2.17 -25.72 16 9 C 0.55 21.57 7.70 86.67 0.67 22.24 16 10 O -0.58 -27.35 13.16 -4.04 -0.05 -27.41 16 11 C -0.16 -5.24 5.90 -19.91 -0.12 -5.36 16 12 C -0.04 -0.98 9.52 22.58 0.21 -0.77 16 13 C -0.13 -2.06 9.92 21.99 0.22 -1.84 16 14 C -0.04 -0.67 9.79 22.36 0.22 -0.45 16 15 C -0.14 -3.30 5.74 -21.33 -0.12 -3.42 16 16 C 0.15 3.28 11.05 85.32 0.94 4.23 16 17 N -0.51 -14.35 10.30 -195.40 -2.01 -16.37 16 18 C 0.07 2.07 11.07 84.14 0.93 3.00 16 19 C -0.18 -6.57 9.28 22.32 0.21 -6.36 16 20 C -0.01 -0.35 5.77 -21.12 -0.12 -0.47 16 21 C 0.18 8.70 4.85 86.35 0.42 9.12 16 22 N -0.59 -27.76 2.88 -675.06 -1.94 -29.70 16 23 C -0.24 -12.37 8.43 84.03 0.71 -11.66 16 24 H 0.07 3.68 6.38 -2.91 -0.02 3.66 16 25 C -0.05 -2.84 4.95 84.86 0.42 -2.42 16 26 N -0.94 -58.09 11.48 21.65 0.25 -57.84 16 27 Si 0.95 46.59 29.58 68.60 2.03 48.62 16 28 H -0.27 -12.23 7.11 99.48 0.71 -11.52 16 29 H -0.31 -15.65 7.11 99.48 0.71 -14.94 16 30 H -0.29 -13.90 7.11 99.48 0.71 -13.19 16 31 H 0.08 1.87 8.14 -2.39 -0.02 1.85 16 32 H 0.03 1.23 7.70 -2.38 -0.02 1.21 16 33 H 0.05 1.72 7.38 -2.39 -0.02 1.70 16 34 H 0.07 1.60 6.40 -2.38 -0.02 1.58 16 35 H 0.09 1.86 8.14 -2.39 -0.02 1.84 16 36 H 0.09 1.91 8.14 -2.39 -0.02 1.89 16 37 H 0.07 2.06 8.14 -2.39 -0.02 2.04 16 38 H 0.41 11.53 4.84 -92.70 -0.45 11.08 16 39 H 0.15 2.81 6.42 -2.91 -0.02 2.79 16 40 H 0.18 1.32 8.06 -2.91 -0.02 1.30 16 41 H 0.19 1.03 8.06 -2.91 -0.02 1.01 16 42 H 0.21 2.37 8.06 -2.91 -0.02 2.35 16 43 H 0.16 4.33 8.06 -2.91 -0.02 4.30 16 44 H 0.15 6.07 5.06 -2.91 -0.01 6.05 16 45 H 0.00 -0.15 8.14 -2.39 -0.02 -0.17 16 46 H 0.04 2.12 6.45 -2.39 -0.02 2.10 16 47 H 0.24 14.99 8.31 -92.71 -0.77 14.21 16 Total: -1.00 -79.63 370.24 2.43 -77.19 By element: Atomic # 1 Polarization: 23.56 SS G_CDS: 0.55 Total: 24.11 kcal Atomic # 6 Polarization: 1.33 SS G_CDS: 5.78 Total: 7.11 kcal Atomic # 7 Polarization: -123.76 SS G_CDS: -5.87 Total: -129.63 kcal Atomic # 8 Polarization: -27.35 SS G_CDS: -0.05 Total: -27.41 kcal Atomic # 14 Polarization: 46.59 SS G_CDS: 2.03 Total: 48.62 kcal Total: -79.63 2.43 -77.19 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001072082335.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.550 kcal (2) G-P(sol) polarization free energy of solvation -79.627 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.923 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.432 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.195 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.355 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.29 seconds