Wall clock time and date at job start Tue Mar 31 2020 22:13:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09004 * 109.70399 * 2 1 4 4 C 1.53191 * 109.58548 * 239.64692 * 2 1 3 5 5 C 1.53050 * 109.31074 * 185.57773 * 4 2 1 6 6 C 1.53347 * 109.60643 * 61.37315 * 5 4 2 7 7 H 1.09002 * 109.68283 * 178.74395 * 6 5 4 8 8 N 1.46504 * 109.47808 * 58.54662 * 6 5 4 9 9 C 1.34775 * 119.99709 * 155.37523 * 8 6 5 10 10 O 1.21604 * 120.00445 * 0.02562 * 9 8 6 11 11 C 1.47452 * 119.99472 * 180.02562 * 9 8 6 12 12 C 1.38859 * 120.46451 * 5.76809 * 11 9 8 13 13 C 1.38896 * 120.67858 * 180.02562 * 12 11 9 14 14 C 1.36375 * 121.27199 * 359.97438 * 13 12 11 15 15 C 1.40393 * 119.98443 * 0.02562 * 14 13 12 16 16 C 1.40466 * 121.94998 * 179.97438 * 15 14 13 17 17 N 1.31277 * 119.88835 * 180.02562 * 16 15 14 18 18 C 1.32555 * 122.72765 * 359.97438 * 17 16 15 19 19 C 1.36333 * 121.81989 * 0.02888 * 18 17 16 20 20 C 1.40290 * 118.70410 * 359.68494 * 19 18 17 21 21 C 1.53190 * 109.14856 * 298.70881 * 6 5 4 22 22 N 1.46924 * 108.89298 * 54.58229 * 21 6 5 23 23 C 1.36938 * 120.62929 * 126.34343 * 22 21 6 24 24 H 1.07997 * 119.99665 * 211.52663 * 23 22 21 25 25 C 1.38811 * 120.00302 * 31.53038 * 23 22 21 26 26 N 1.31621 * 119.99873 * 9.79613 * 25 23 22 27 27 Si 1.86801 * 119.99917 * 189.79746 * 25 23 22 28 28 H 1.48504 * 109.47121 * 60.00165 * 27 25 23 29 29 H 1.48501 * 109.46810 * 179.97438 * 27 25 23 30 30 H 1.48501 * 109.47184 * 299.99988 * 27 25 23 31 31 H 1.09005 * 109.46834 * 299.64714 * 1 2 3 32 32 H 1.08995 * 109.47144 * 59.64523 * 1 2 3 33 33 H 1.08999 * 109.46964 * 179.64815 * 1 2 3 34 34 H 1.09000 * 109.49416 * 305.52608 * 4 2 1 35 35 H 1.08992 * 109.50177 * 65.59285 * 4 2 1 36 36 H 1.09003 * 109.45327 * 181.38143 * 5 4 2 37 37 H 1.08998 * 109.45633 * 301.35471 * 5 4 2 38 38 H 0.96997 * 120.00080 * 335.38052 * 8 6 5 39 39 H 1.07999 * 119.65835 * 359.97438 * 12 11 9 40 40 H 1.07999 * 119.36577 * 180.02562 * 13 12 11 41 41 H 1.07999 * 120.00394 * 180.02562 * 14 13 12 42 42 H 1.08001 * 120.05879 * 359.97438 * 16 15 14 43 43 H 1.08000 * 119.09171 * 180.02562 * 18 17 16 44 44 H 1.08004 * 120.64853 * 179.97438 * 19 18 17 45 45 H 1.09006 * 109.58891 * 294.71932 * 21 6 5 46 46 H 1.09002 * 109.58802 * 174.44334 * 21 6 5 47 47 H 0.96998 * 119.99915 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8975 1.0262 0.0000 4 6 2.0435 -0.7293 -1.2454 5 6 3.5675 -0.8479 -1.1701 6 6 3.9595 -1.6673 0.0654 7 1 5.0437 -1.7714 0.1080 8 7 3.3429 -2.9940 -0.0126 9 6 3.8960 -4.0336 0.6429 10 8 4.9065 -3.8704 1.2995 11 6 3.2757 -5.3690 0.5640 12 6 2.1930 -5.5938 -0.2759 13 6 1.6050 -6.8498 -0.3534 14 6 2.0696 -7.8959 0.3880 15 6 3.1622 -7.7140 1.2507 16 6 3.6739 -8.7622 2.0333 17 7 4.6972 -8.5468 2.8269 18 6 5.2872 -7.3643 2.9306 19 6 4.8647 -6.2848 2.2130 20 6 3.7790 -6.4402 1.3383 21 6 3.4651 -0.9469 1.3237 22 7 2.0226 -0.6995 1.1944 23 6 1.1538 -1.1126 2.1690 24 1 0.1481 -1.4060 1.9068 25 6 1.5658 -1.1543 3.4939 26 7 2.7169 -0.6194 3.8423 27 14 0.4867 -1.9697 4.7824 28 1 0.2817 -3.3966 4.4254 29 1 1.1479 -1.8820 6.1092 30 1 -0.8269 -1.2794 4.8367 31 1 -0.3633 0.5084 0.8932 32 1 -0.3633 0.5193 -0.8867 33 1 -0.3633 -1.0276 -0.0063 34 1 1.6029 -1.7253 -1.2913 35 1 1.7655 -0.1671 -2.1368 36 1 3.9377 -1.3448 -2.0669 37 1 4.0061 0.1474 -1.0991 38 1 2.5367 -3.1241 -0.5360 39 1 1.8037 -4.7836 -0.8745 40 1 0.7642 -7.0011 -1.0140 41 1 1.5970 -8.8640 0.3115 42 1 3.2257 -9.7435 1.9829 43 1 6.1257 -7.2529 3.6021 44 1 5.3593 -5.3298 2.3125 45 1 3.9904 0.0021 1.4316 46 1 3.6522 -1.5695 2.1986 47 1 3.0046 -0.6482 4.7682 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001072082336.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:13:50 Heat of formation + Delta-G solvation = 46.032193 kcal Electronic energy + Delta-G solvation = -30351.775252 eV Core-core repulsion = 26500.003586 eV Total energy + Delta-G solvation = -3851.771666 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.30 seconds Orbital eigenvalues (eV) -40.95956 -39.38275 -37.70803 -37.01501 -34.26768 -32.80557 -32.79724 -31.50224 -30.63459 -29.93895 -29.34877 -26.27811 -25.07003 -24.52654 -23.46231 -23.19015 -22.18515 -20.76882 -20.41716 -18.88102 -18.04799 -17.74801 -16.48557 -16.37909 -16.09479 -15.41539 -15.07566 -15.01603 -14.64213 -14.32503 -14.09306 -13.84059 -13.78004 -13.62205 -13.31334 -13.10592 -12.86046 -12.54904 -12.53011 -12.07223 -12.01666 -11.85437 -11.57165 -11.24789 -11.19354 -10.94720 -10.92082 -10.72602 -10.43089 -10.37589 -10.08466 -9.98424 -9.73082 -9.54630 -9.51224 -9.12774 -9.03474 -8.49626 -8.45951 -8.01745 -6.58371 -5.75722 -3.24241 0.16716 0.89188 1.76506 2.80383 3.37041 3.43178 3.44567 3.46006 3.65365 4.19901 4.46564 4.48269 4.58280 4.63755 4.74595 4.90514 5.00195 5.09559 5.28041 5.32215 5.36374 5.41964 5.47856 5.55536 5.59880 5.71312 5.89408 5.96387 5.96906 6.01067 6.08526 6.11801 6.19192 6.28523 6.31511 6.39196 6.41423 6.47342 6.55903 6.62104 6.70601 6.79602 6.89807 7.02411 7.08803 7.36540 7.70797 7.81088 7.99866 8.01727 8.49847 8.67984 9.23104 9.85890 10.42590 11.31551 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.010765 B = 0.004507 C = 0.003961 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2600.425345 B = 6210.837467 C = 7066.619287 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.165 3.835 3 H 0.025 0.975 4 C -0.130 4.130 5 C -0.119 4.119 6 C 0.117 3.883 7 H 0.078 0.922 8 N -0.689 5.689 9 C 0.559 3.441 10 O -0.538 6.538 11 C -0.111 4.111 12 C -0.062 4.062 13 C -0.127 4.127 14 C -0.069 4.069 15 C -0.118 4.118 16 C 0.133 3.867 17 N -0.488 5.488 18 C 0.065 3.935 19 C -0.144 4.144 20 C 0.009 3.991 21 C 0.161 3.839 22 N -0.582 5.582 23 C -0.251 4.251 24 H 0.066 0.934 25 C 0.009 3.991 26 N -0.900 5.900 27 Si 0.896 3.104 28 H -0.285 1.285 29 H -0.290 1.290 30 H -0.283 1.283 31 H 0.061 0.939 32 H 0.037 0.963 33 H 0.050 0.950 34 H 0.052 0.948 35 H 0.053 0.947 36 H 0.051 0.949 37 H 0.072 0.928 38 H 0.394 0.606 39 H 0.130 0.870 40 H 0.132 0.868 41 H 0.135 0.865 42 H 0.161 0.839 43 H 0.153 0.847 44 H 0.179 0.821 45 H 0.026 0.974 46 H 0.100 0.900 47 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.764 -10.520 -11.861 15.873 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.058 3.942 3 H 0.043 0.957 4 C -0.170 4.170 5 C -0.157 4.157 6 C 0.011 3.989 7 H 0.096 0.904 8 N -0.339 5.339 9 C 0.346 3.654 10 O -0.418 6.418 11 C -0.114 4.114 12 C -0.082 4.082 13 C -0.145 4.145 14 C -0.089 4.089 15 C -0.121 4.121 16 C -0.039 4.039 17 N -0.196 5.196 18 C -0.078 4.078 19 C -0.163 4.163 20 C 0.003 3.997 21 C 0.035 3.965 22 N -0.306 5.306 23 C -0.380 4.380 24 H 0.083 0.917 25 C -0.190 4.190 26 N -0.544 5.544 27 Si 0.726 3.274 28 H -0.212 1.212 29 H -0.216 1.216 30 H -0.209 1.209 31 H 0.080 0.920 32 H 0.056 0.944 33 H 0.069 0.931 34 H 0.071 0.929 35 H 0.072 0.928 36 H 0.070 0.930 37 H 0.090 0.910 38 H 0.230 0.770 39 H 0.148 0.852 40 H 0.150 0.850 41 H 0.152 0.848 42 H 0.178 0.822 43 H 0.171 0.829 44 H 0.195 0.805 45 H 0.044 0.956 46 H 0.118 0.882 47 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 0.469 -10.909 -10.640 15.246 hybrid contribution -1.409 0.284 0.030 1.438 sum -0.940 -10.625 -10.610 15.045 Atomic orbital electron populations 1.21789 0.96121 1.01132 1.00229 1.20471 0.92873 0.93667 0.87175 0.95727 1.22071 0.95141 1.00550 0.99225 1.21750 0.96999 1.00226 0.96720 1.21931 0.97029 0.81439 0.98505 0.90391 1.45777 1.29297 1.08662 1.50172 1.17850 0.84101 0.83758 0.79689 1.90564 1.25645 1.84476 1.41115 1.20035 0.97998 0.93981 0.99419 1.21478 0.93287 0.97432 0.95995 1.20809 1.00599 0.92604 1.00449 1.21104 0.94318 0.99454 0.94058 1.19006 0.98207 0.94621 1.00220 1.23098 0.92055 0.97804 0.90922 1.67365 1.08868 1.24883 1.18453 1.22320 0.99198 0.87849 0.98429 1.23039 0.95989 1.02884 0.94361 1.17962 0.94843 0.91839 0.95047 1.21221 0.83757 0.97125 0.94445 1.44008 1.02680 1.64733 1.19150 1.18996 0.95548 1.37796 0.85708 0.91685 1.25129 0.97311 0.99377 0.97211 1.69918 1.21258 1.46253 1.16966 0.86475 0.80016 0.79490 0.81388 1.21151 1.21592 1.20916 0.92000 0.94448 0.93056 0.92907 0.92789 0.93037 0.90977 0.76994 0.85172 0.85016 0.84762 0.82186 0.82950 0.80464 0.95640 0.88199 0.93555 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.36 7.96 37.16 0.30 -2.07 16 2 C 0.16 3.13 3.50 -67.60 -0.24 2.89 16 3 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 4 C -0.13 -1.97 5.21 -26.61 -0.14 -2.11 16 5 C -0.12 -1.79 5.59 -26.53 -0.15 -1.93 16 6 C 0.12 2.14 2.83 -67.65 -0.19 1.94 16 7 H 0.08 1.46 7.58 -51.93 -0.39 1.07 16 8 N -0.69 -11.91 4.87 -54.60 -0.27 -12.17 16 9 C 0.56 10.47 7.70 -12.51 -0.10 10.37 16 10 O -0.54 -11.52 13.16 5.27 0.07 -11.45 16 11 C -0.11 -1.81 5.90 -104.70 -0.62 -2.43 16 12 C -0.06 -0.79 9.51 -39.11 -0.37 -1.16 16 13 C -0.13 -1.32 9.92 -40.01 -0.40 -1.72 16 14 C -0.07 -0.73 9.79 -39.44 -0.39 -1.11 16 15 C -0.12 -1.61 5.74 -106.88 -0.61 -2.22 16 16 C 0.13 1.69 11.05 -16.95 -0.19 1.50 16 17 N -0.49 -7.23 10.30 -13.11 -0.14 -7.37 16 18 C 0.06 0.98 11.07 -17.93 -0.20 0.78 16 19 C -0.14 -2.44 9.28 -39.50 -0.37 -2.80 16 20 C 0.01 0.15 5.77 -106.55 -0.61 -0.47 16 21 C 0.16 3.73 4.84 -3.71 -0.02 3.72 16 22 N -0.58 -13.45 2.91 -164.78 -0.48 -13.93 16 23 C -0.25 -6.49 8.54 -15.06 -0.13 -6.62 16 24 H 0.07 1.65 6.27 -52.49 -0.33 1.32 16 25 C 0.01 0.24 5.07 -17.43 -0.09 0.16 16 26 N -0.90 -26.12 11.01 55.49 0.61 -25.51 16 27 Si 0.90 22.05 29.56 -169.99 -5.03 17.02 16 28 H -0.28 -7.05 7.11 56.52 0.40 -6.65 16 29 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 30 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 31 H 0.06 1.20 7.64 -51.93 -0.40 0.81 16 32 H 0.04 0.54 8.14 -51.93 -0.42 0.11 16 33 H 0.05 0.89 7.43 -51.93 -0.39 0.51 16 34 H 0.05 0.77 6.41 -51.93 -0.33 0.44 16 35 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 36 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 37 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 38 H 0.39 5.99 4.85 -40.82 -0.20 5.79 16 39 H 0.13 1.40 6.43 -52.49 -0.34 1.06 16 40 H 0.13 0.96 8.06 -52.49 -0.42 0.53 16 41 H 0.13 0.93 8.06 -52.49 -0.42 0.50 16 42 H 0.16 1.40 8.06 -52.49 -0.42 0.98 16 43 H 0.15 1.94 8.06 -52.49 -0.42 1.52 16 44 H 0.18 3.30 5.06 -52.48 -0.27 3.04 16 45 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 46 H 0.10 2.75 6.08 -51.93 -0.32 2.44 16 47 H 0.25 7.30 8.31 -40.82 -0.34 6.96 16 LS Contribution 369.55 15.07 5.57 5.57 Total: -1.00 -32.03 369.55 -10.48 -42.51 By element: Atomic # 1 Polarization: 14.93 SS G_CDS: -6.32 Total: 8.61 kcal Atomic # 6 Polarization: 1.23 SS G_CDS: -4.50 Total: -3.28 kcal Atomic # 7 Polarization: -58.71 SS G_CDS: -0.27 Total: -58.98 kcal Atomic # 8 Polarization: -11.52 SS G_CDS: 0.07 Total: -11.45 kcal Atomic # 14 Polarization: 22.05 SS G_CDS: -5.03 Total: 17.02 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -32.03 -10.48 -42.51 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001072082336.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.538 kcal (2) G-P(sol) polarization free energy of solvation -32.028 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.510 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.478 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.506 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.032 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.30 seconds