Wall clock time and date at job start Tue Mar 31 2020 22:13:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09004 * 109.70399 * 2 1 4 4 C 1.53191 * 109.58548 * 239.64692 * 2 1 3 5 5 C 1.53050 * 109.31074 * 185.57773 * 4 2 1 6 6 C 1.53347 * 109.60643 * 61.37315 * 5 4 2 7 7 H 1.09002 * 109.68283 * 178.74395 * 6 5 4 8 8 N 1.46504 * 109.47808 * 58.54662 * 6 5 4 9 9 C 1.34775 * 119.99709 * 155.37523 * 8 6 5 10 10 O 1.21604 * 120.00445 * 0.02562 * 9 8 6 11 11 C 1.47452 * 119.99472 * 180.02562 * 9 8 6 12 12 C 1.38859 * 120.46451 * 5.76809 * 11 9 8 13 13 C 1.38896 * 120.67858 * 180.02562 * 12 11 9 14 14 C 1.36375 * 121.27199 * 359.97438 * 13 12 11 15 15 C 1.40393 * 119.98443 * 0.02562 * 14 13 12 16 16 C 1.40466 * 121.94998 * 179.97438 * 15 14 13 17 17 N 1.31277 * 119.88835 * 180.02562 * 16 15 14 18 18 C 1.32555 * 122.72765 * 359.97438 * 17 16 15 19 19 C 1.36333 * 121.81989 * 0.02888 * 18 17 16 20 20 C 1.40290 * 118.70410 * 359.68494 * 19 18 17 21 21 C 1.53190 * 109.14856 * 298.70881 * 6 5 4 22 22 N 1.46924 * 108.89298 * 54.58229 * 21 6 5 23 23 C 1.36938 * 120.62929 * 126.34343 * 22 21 6 24 24 H 1.07997 * 119.99665 * 211.52663 * 23 22 21 25 25 C 1.38811 * 120.00302 * 31.53038 * 23 22 21 26 26 N 1.31621 * 119.99873 * 9.79613 * 25 23 22 27 27 Si 1.86801 * 119.99917 * 189.79746 * 25 23 22 28 28 H 1.48504 * 109.47121 * 60.00165 * 27 25 23 29 29 H 1.48501 * 109.46810 * 179.97438 * 27 25 23 30 30 H 1.48501 * 109.47184 * 299.99988 * 27 25 23 31 31 H 1.09005 * 109.46834 * 299.64714 * 1 2 3 32 32 H 1.08995 * 109.47144 * 59.64523 * 1 2 3 33 33 H 1.08999 * 109.46964 * 179.64815 * 1 2 3 34 34 H 1.09000 * 109.49416 * 305.52608 * 4 2 1 35 35 H 1.08992 * 109.50177 * 65.59285 * 4 2 1 36 36 H 1.09003 * 109.45327 * 181.38143 * 5 4 2 37 37 H 1.08998 * 109.45633 * 301.35471 * 5 4 2 38 38 H 0.96997 * 120.00080 * 335.38052 * 8 6 5 39 39 H 1.07999 * 119.65835 * 359.97438 * 12 11 9 40 40 H 1.07999 * 119.36577 * 180.02562 * 13 12 11 41 41 H 1.07999 * 120.00394 * 180.02562 * 14 13 12 42 42 H 1.08001 * 120.05879 * 359.97438 * 16 15 14 43 43 H 1.08000 * 119.09171 * 180.02562 * 18 17 16 44 44 H 1.08004 * 120.64853 * 179.97438 * 19 18 17 45 45 H 1.09006 * 109.58891 * 294.71932 * 21 6 5 46 46 H 1.09002 * 109.58802 * 174.44334 * 21 6 5 47 47 H 0.96998 * 119.99915 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8975 1.0262 0.0000 4 6 2.0435 -0.7293 -1.2454 5 6 3.5675 -0.8479 -1.1701 6 6 3.9595 -1.6673 0.0654 7 1 5.0437 -1.7714 0.1080 8 7 3.3429 -2.9940 -0.0126 9 6 3.8960 -4.0336 0.6429 10 8 4.9065 -3.8704 1.2995 11 6 3.2757 -5.3690 0.5640 12 6 2.1930 -5.5938 -0.2759 13 6 1.6050 -6.8498 -0.3534 14 6 2.0696 -7.8959 0.3880 15 6 3.1622 -7.7140 1.2507 16 6 3.6739 -8.7622 2.0333 17 7 4.6972 -8.5468 2.8269 18 6 5.2872 -7.3643 2.9306 19 6 4.8647 -6.2848 2.2130 20 6 3.7790 -6.4402 1.3383 21 6 3.4651 -0.9469 1.3237 22 7 2.0226 -0.6995 1.1944 23 6 1.1538 -1.1126 2.1690 24 1 0.1481 -1.4060 1.9068 25 6 1.5658 -1.1543 3.4939 26 7 2.7169 -0.6194 3.8423 27 14 0.4867 -1.9697 4.7824 28 1 0.2817 -3.3966 4.4254 29 1 1.1479 -1.8820 6.1092 30 1 -0.8269 -1.2794 4.8367 31 1 -0.3633 0.5084 0.8932 32 1 -0.3633 0.5193 -0.8867 33 1 -0.3633 -1.0276 -0.0063 34 1 1.6029 -1.7253 -1.2913 35 1 1.7655 -0.1671 -2.1368 36 1 3.9377 -1.3448 -2.0669 37 1 4.0061 0.1474 -1.0991 38 1 2.5367 -3.1241 -0.5360 39 1 1.8037 -4.7836 -0.8745 40 1 0.7642 -7.0011 -1.0140 41 1 1.5970 -8.8640 0.3115 42 1 3.2257 -9.7435 1.9829 43 1 6.1257 -7.2529 3.6021 44 1 5.3593 -5.3298 2.3125 45 1 3.9904 0.0021 1.4316 46 1 3.6522 -1.5695 2.1986 47 1 3.0046 -0.6482 4.7682 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001072082336.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:13:49 Heat of formation + Delta-G solvation = 25.853587 kcal Electronic energy + Delta-G solvation = -30352.650262 eV Core-core repulsion = 26500.003586 eV Total energy + Delta-G solvation = -3852.646676 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -42.06790 -40.76466 -39.17549 -38.09968 -35.86955 -34.55032 -33.89147 -32.75318 -31.84143 -31.69772 -30.50117 -27.87608 -26.80980 -25.61018 -24.57510 -24.31364 -23.84188 -22.18008 -21.81023 -20.45697 -19.17411 -18.85541 -18.18331 -17.57642 -17.29926 -17.02921 -16.54037 -16.22828 -16.03655 -15.74858 -15.54762 -15.24631 -15.12980 -14.80330 -14.70555 -14.42812 -14.31743 -14.02810 -13.62201 -13.52911 -13.06038 -13.02361 -12.88084 -12.83911 -12.67725 -12.59071 -12.56521 -12.43352 -12.15445 -12.08938 -11.58167 -11.22348 -11.17381 -11.06888 -10.92399 -10.54639 -10.29537 -10.15425 -9.99554 -9.09578 -8.54072 -7.82441 -5.31654 -0.85756 -0.13522 0.64842 1.37097 1.40029 1.44833 1.75866 2.16918 2.37209 2.47493 3.10641 3.33962 3.48492 3.57521 3.63108 3.65608 3.80210 3.91518 3.93790 4.03222 4.10124 4.17460 4.21792 4.40018 4.49688 4.56525 4.66278 4.72341 4.75546 4.80091 4.86369 4.93113 4.98476 5.04298 5.07272 5.11509 5.12480 5.26932 5.27902 5.32113 5.38525 5.58395 5.61132 5.64854 5.70621 5.74979 5.77225 5.81131 6.45081 6.63072 6.93806 7.18814 7.31962 7.92501 8.43438 9.21692 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.010765 B = 0.004507 C = 0.003961 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2600.425345 B = 6210.837467 C = 7066.619287 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C 0.153 3.847 3 H 0.012 0.988 4 C -0.119 4.119 5 C -0.110 4.110 6 C 0.127 3.873 7 H 0.064 0.936 8 N -0.681 5.681 9 C 0.549 3.451 10 O -0.581 6.581 11 C -0.160 4.160 12 C -0.042 4.042 13 C -0.129 4.129 14 C -0.044 4.044 15 C -0.137 4.137 16 C 0.150 3.850 17 N -0.512 5.512 18 C 0.065 3.935 19 C -0.184 4.184 20 C -0.012 4.012 21 C 0.172 3.828 22 N -0.594 5.594 23 C -0.233 4.233 24 H 0.077 0.923 25 C -0.054 4.054 26 N -0.938 5.938 27 Si 0.948 3.052 28 H -0.285 1.285 29 H -0.305 1.305 30 H -0.268 1.268 31 H 0.033 0.967 32 H 0.076 0.924 33 H 0.053 0.947 34 H 0.065 0.935 35 H 0.092 0.908 36 H 0.086 0.914 37 H 0.072 0.928 38 H 0.406 0.594 39 H 0.151 0.849 40 H 0.179 0.821 41 H 0.186 0.814 42 H 0.209 0.791 43 H 0.162 0.838 44 H 0.146 0.854 45 H -0.006 1.006 46 H 0.048 0.952 47 H 0.241 0.759 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.471 -13.276 -15.787 21.106 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.048 3.952 3 H 0.030 0.970 4 C -0.158 4.158 5 C -0.148 4.148 6 C 0.020 3.980 7 H 0.082 0.918 8 N -0.332 5.332 9 C 0.338 3.662 10 O -0.464 6.464 11 C -0.163 4.163 12 C -0.062 4.062 13 C -0.146 4.146 14 C -0.064 4.064 15 C -0.139 4.139 16 C -0.022 4.022 17 N -0.220 5.220 18 C -0.076 4.076 19 C -0.204 4.204 20 C -0.017 4.017 21 C 0.044 3.956 22 N -0.318 5.318 23 C -0.364 4.364 24 H 0.094 0.906 25 C -0.249 4.249 26 N -0.585 5.585 27 Si 0.778 3.222 28 H -0.212 1.212 29 H -0.232 1.232 30 H -0.193 1.193 31 H 0.052 0.948 32 H 0.095 0.905 33 H 0.072 0.928 34 H 0.083 0.917 35 H 0.111 0.889 36 H 0.105 0.895 37 H 0.091 0.909 38 H 0.245 0.755 39 H 0.169 0.831 40 H 0.196 0.804 41 H 0.203 0.797 42 H 0.226 0.774 43 H 0.179 0.821 44 H 0.163 0.837 45 H 0.012 0.988 46 H 0.067 0.933 47 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges -3.284 -13.657 -14.622 20.276 hybrid contribution -0.331 1.088 1.161 1.625 sum -3.615 -12.569 -13.461 18.768 Atomic orbital electron populations 1.21720 0.94563 1.01458 1.00790 1.20791 0.94250 0.93166 0.87002 0.96995 1.21963 0.94495 1.01150 0.98147 1.21723 0.97482 0.99811 0.95794 1.21600 0.96265 0.82198 0.97902 0.91776 1.45625 1.29637 1.07765 1.50137 1.18484 0.83706 0.85209 0.78777 1.90556 1.27669 1.85395 1.42802 1.19906 1.00837 0.92586 1.02997 1.21884 0.91070 0.99442 0.93806 1.21332 1.01370 0.91113 1.00801 1.21712 0.91910 1.01653 0.91110 1.19355 0.99505 0.93405 1.01608 1.23944 0.90381 0.99322 0.88543 1.67466 1.10391 1.24106 1.20074 1.22442 0.99358 0.87866 0.97966 1.22814 0.98070 1.02271 0.97224 1.18241 0.94916 0.93581 0.95005 1.20854 0.84294 0.95197 0.95208 1.44215 1.02088 1.65430 1.20051 1.19348 0.95896 1.35142 0.85968 0.90587 1.25809 0.98499 1.01235 0.99349 1.70118 1.23213 1.48995 1.16156 0.85625 0.79111 0.78650 0.78844 1.21174 1.23213 1.19302 0.94799 0.90541 0.92778 0.91680 0.88941 0.89526 0.90924 0.75547 0.83130 0.80408 0.79722 0.77423 0.82096 0.83687 0.98767 0.93311 0.94963 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.12 7.96 71.98 0.57 -3.55 16 2 C 0.15 5.58 3.50 44.97 0.16 5.73 16 3 H 0.01 0.48 8.14 -2.38 -0.02 0.46 16 4 C -0.12 -3.13 5.21 30.67 0.16 -2.97 16 5 C -0.11 -3.07 5.59 30.73 0.17 -2.90 16 6 C 0.13 4.79 2.83 45.17 0.13 4.91 16 7 H 0.06 2.59 7.58 -2.39 -0.02 2.57 16 8 N -0.68 -23.74 4.87 -444.91 -2.17 -25.91 16 9 C 0.55 21.78 7.70 86.67 0.67 22.44 16 10 O -0.58 -27.70 13.16 -4.04 -0.05 -27.75 16 11 C -0.16 -5.27 5.90 -19.92 -0.12 -5.39 16 12 C -0.04 -0.95 9.51 22.58 0.21 -0.73 16 13 C -0.13 -1.98 9.92 21.99 0.22 -1.76 16 14 C -0.04 -0.69 9.79 22.36 0.22 -0.47 16 15 C -0.14 -3.37 5.74 -21.33 -0.12 -3.50 16 16 C 0.15 3.39 11.05 85.32 0.94 4.33 16 17 N -0.51 -14.93 10.30 -195.39 -2.01 -16.94 16 18 C 0.07 2.12 11.07 84.14 0.93 3.05 16 19 C -0.18 -6.86 9.28 22.32 0.21 -6.66 16 20 C -0.01 -0.39 5.77 -21.11 -0.12 -0.51 16 21 C 0.17 8.48 4.84 86.36 0.42 8.90 16 22 N -0.59 -27.96 2.91 -675.23 -1.96 -29.92 16 23 C -0.23 -12.25 8.54 84.03 0.72 -11.53 16 24 H 0.08 3.79 6.27 -2.91 -0.02 3.77 16 25 C -0.05 -3.11 5.07 84.86 0.43 -2.68 16 26 N -0.94 -58.38 11.01 21.65 0.24 -58.14 16 27 Si 0.95 46.92 29.56 68.60 2.03 48.95 16 28 H -0.29 -13.92 7.11 99.48 0.71 -13.21 16 29 H -0.31 -15.72 7.11 99.48 0.71 -15.01 16 30 H -0.27 -12.42 7.11 99.48 0.71 -11.71 16 31 H 0.03 1.26 7.64 -2.38 -0.02 1.24 16 32 H 0.08 1.87 8.14 -2.39 -0.02 1.85 16 33 H 0.05 1.70 7.43 -2.39 -0.02 1.68 16 34 H 0.06 1.59 6.41 -2.39 -0.02 1.58 16 35 H 0.09 1.86 8.14 -2.39 -0.02 1.84 16 36 H 0.09 1.91 8.14 -2.39 -0.02 1.89 16 37 H 0.07 2.05 8.14 -2.39 -0.02 2.03 16 38 H 0.41 11.59 4.85 -92.71 -0.45 11.14 16 39 H 0.15 2.64 6.43 -2.91 -0.02 2.62 16 40 H 0.18 1.19 8.06 -2.91 -0.02 1.17 16 41 H 0.19 1.04 8.06 -2.91 -0.02 1.02 16 42 H 0.21 2.51 8.06 -2.91 -0.02 2.48 16 43 H 0.16 4.57 8.06 -2.91 -0.02 4.54 16 44 H 0.15 6.28 5.06 -2.91 -0.01 6.26 16 45 H -0.01 -0.30 8.14 -2.38 -0.02 -0.32 16 46 H 0.05 2.93 6.08 -2.39 -0.01 2.91 16 47 H 0.24 15.01 8.31 -92.71 -0.77 14.23 16 Total: -1.00 -80.37 369.55 2.42 -77.95 By element: Atomic # 1 Polarization: 24.49 SS G_CDS: 0.55 Total: 25.04 kcal Atomic # 6 Polarization: 0.93 SS G_CDS: 5.79 Total: 6.72 kcal Atomic # 7 Polarization: -125.00 SS G_CDS: -5.90 Total: -130.91 kcal Atomic # 8 Polarization: -27.70 SS G_CDS: -0.05 Total: -27.75 kcal Atomic # 14 Polarization: 46.92 SS G_CDS: 2.03 Total: 48.95 kcal Total: -80.37 2.42 -77.95 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001072082336.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.801 kcal (2) G-P(sol) polarization free energy of solvation -80.368 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.433 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.420 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.948 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.854 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds