Wall clock time and date at job start Tue Mar 31 2020 22:13:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08999 * 109.59077 * 2 1 4 4 C 1.53185 * 109.58773 * 239.57146 * 2 1 3 5 5 C 1.53040 * 109.31325 * 185.57965 * 4 2 1 6 6 C 1.53035 * 109.54148 * 61.36715 * 5 4 2 7 7 H 1.09001 * 109.52780 * 58.60014 * 6 5 4 8 8 N 1.46496 * 109.50352 * 178.68626 * 6 5 4 9 9 C 1.34774 * 120.00299 * 204.83898 * 8 6 5 10 10 O 1.21602 * 120.00082 * 359.97438 * 9 8 6 11 11 C 1.47453 * 120.00259 * 179.97438 * 9 8 6 12 12 C 1.38863 * 120.46169 * 354.27777 * 11 9 8 13 13 C 1.38891 * 120.67645 * 179.97438 * 12 11 9 14 14 C 1.36376 * 121.27807 * 0.02562 * 13 12 11 15 15 C 1.40393 * 119.98142 * 0.02562 * 14 13 12 16 16 C 1.40468 * 121.95745 * 180.02562 * 15 14 13 17 17 N 1.31282 * 119.88508 * 179.15253 * 16 15 14 18 18 C 1.32560 * 122.72814 * 0.78933 * 17 16 15 19 19 C 1.36329 * 121.81998 * 359.48676 * 18 17 16 20 20 C 1.40289 * 118.70144 * 359.97358 * 19 18 17 21 21 C 1.53200 * 109.30975 * 298.63492 * 6 5 4 22 22 N 1.46926 * 108.77544 * 54.63656 * 21 6 5 23 23 C 1.36937 * 120.63347 * 126.41216 * 22 21 6 24 24 H 1.07998 * 119.99981 * 209.74217 * 23 22 21 25 25 C 1.38809 * 119.99482 * 29.74568 * 23 22 21 26 26 N 1.31612 * 120.00577 * 15.19248 * 25 23 22 27 27 Si 1.86802 * 119.99714 * 195.19339 * 25 23 22 28 28 H 1.48501 * 109.46960 * 89.99725 * 27 25 23 29 29 H 1.48492 * 109.47338 * 210.00032 * 27 25 23 30 30 H 1.48499 * 109.47143 * 330.00179 * 27 25 23 31 31 H 1.09002 * 109.47120 * 299.71987 * 1 2 3 32 32 H 1.09001 * 109.46896 * 59.71831 * 1 2 3 33 33 H 1.08999 * 109.47132 * 179.71926 * 1 2 3 34 34 H 1.09002 * 109.50108 * 305.52758 * 4 2 1 35 35 H 1.09003 * 109.50082 * 65.62801 * 4 2 1 36 36 H 1.09000 * 109.46367 * 301.34467 * 5 4 2 37 37 H 1.09003 * 109.45984 * 181.38243 * 5 4 2 38 38 H 0.97002 * 120.00149 * 24.82686 * 8 6 5 39 39 H 1.08008 * 119.65816 * 0.02562 * 12 11 9 40 40 H 1.08006 * 119.36262 * 180.02562 * 13 12 11 41 41 H 1.07993 * 120.00880 * 180.02562 * 14 13 12 42 42 H 1.08007 * 120.05408 * 359.97438 * 16 15 14 43 43 H 1.08002 * 119.08544 * 179.45726 * 18 17 16 44 44 H 1.08003 * 120.64983 * 179.97438 * 19 18 17 45 45 H 1.08999 * 109.58532 * 174.42339 * 21 6 5 46 46 H 1.08998 * 109.58812 * 294.84686 * 21 6 5 47 47 H 0.97001 * 120.00534 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8954 1.0269 0.0000 4 6 2.0435 -0.7309 -1.2444 5 6 3.5675 -0.8495 -1.1690 6 6 3.9569 -1.6656 0.0656 7 1 3.4987 -2.6531 0.0090 8 7 5.4142 -1.8052 0.1199 9 6 5.9677 -2.8454 0.7741 10 8 5.2574 -3.6680 1.3198 11 6 7.4345 -2.9862 0.8283 12 6 8.2516 -2.1220 0.1115 13 6 9.6337 -2.2502 0.1598 14 6 10.2289 -3.2231 0.9075 15 6 9.4415 -4.1195 1.6474 16 6 10.0107 -5.1364 2.4317 17 7 9.2362 -5.9421 3.1207 18 6 7.9137 -5.8537 3.1030 19 6 7.2664 -4.9047 2.3690 20 6 8.0289 -4.0002 1.6148 21 6 3.4650 -0.9452 1.3250 22 7 2.0225 -0.6981 1.1955 23 6 1.1537 -1.1100 2.1704 24 1 0.1393 -1.3761 1.9125 25 6 1.5768 -1.1854 3.4903 26 7 2.6915 -0.5907 3.8591 27 14 0.5641 -2.1311 4.7432 28 1 1.0150 -3.5455 4.7780 29 1 0.7423 -1.5215 6.0854 30 1 -0.8701 -2.0780 4.3619 31 1 -0.3633 0.5095 0.8925 32 1 -0.3633 0.5182 -0.8875 33 1 -0.3633 -1.0276 -0.0050 34 1 1.6030 -1.7270 -1.2891 35 1 1.7660 -0.1695 -2.1366 36 1 4.0062 0.1459 -1.0994 37 1 3.9378 -1.3475 -2.0650 38 1 5.9808 -1.1490 -0.3151 39 1 7.8077 -1.3417 -0.4890 40 1 10.2491 -1.5662 -0.4059 41 1 11.3056 -3.3038 0.9305 42 1 11.0841 -5.2469 2.4784 43 1 7.3330 -6.5533 3.6859 44 1 6.1878 -4.8501 2.3680 45 1 3.6518 -1.5689 2.1992 46 1 3.9902 0.0038 1.4318 47 1 2.9870 -0.6431 4.7815 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001072082337.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:13:53 Heat of formation + Delta-G solvation = 22.293580 kcal Electronic energy + Delta-G solvation = -29504.391265 eV Core-core repulsion = 25651.590216 eV Total energy + Delta-G solvation = -3852.801049 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -42.09655 -40.72408 -39.26247 -38.13118 -36.13967 -34.70367 -33.91699 -32.76354 -31.90780 -31.71523 -30.57330 -27.78775 -26.86421 -25.56256 -24.54565 -24.33704 -23.89939 -22.21449 -21.66249 -20.91526 -19.08595 -18.85958 -18.34503 -17.63461 -17.29614 -17.14737 -16.69853 -16.20995 -16.06967 -15.75757 -15.54137 -15.27208 -15.14627 -14.94346 -14.78379 -14.55009 -14.27188 -14.13867 -13.56651 -13.49634 -13.13334 -13.03712 -12.91554 -12.77936 -12.75413 -12.68272 -12.59302 -12.30020 -12.13461 -11.98353 -11.66602 -11.41225 -11.19455 -11.16582 -10.93182 -10.57450 -10.33296 -10.21094 -10.10621 -9.12757 -8.64212 -7.88173 -5.34586 -0.88282 -0.14846 0.61713 1.37334 1.42548 1.47899 1.72129 2.05685 2.26936 2.47656 3.08302 3.28328 3.47027 3.48413 3.63389 3.70661 3.78047 3.88877 3.90569 3.98596 4.07966 4.18345 4.25160 4.37468 4.38653 4.54147 4.61723 4.69803 4.71785 4.77303 4.84461 4.87495 4.93008 4.99878 5.05664 5.07928 5.17764 5.25487 5.28502 5.30742 5.38024 5.45125 5.53826 5.59584 5.67085 5.69007 5.76883 5.79758 6.38465 6.55051 6.92842 7.13221 7.25450 7.87875 8.36718 9.16686 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.012283 B = 0.003568 C = 0.002941 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2279.077654 B = 7846.043577 C = 9517.411979 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.153 3.847 3 H 0.024 0.976 4 C -0.118 4.118 5 C -0.107 4.107 6 C 0.131 3.869 7 H 0.050 0.950 8 N -0.699 5.699 9 C 0.548 3.452 10 O -0.577 6.577 11 C -0.163 4.163 12 C -0.037 4.037 13 C -0.129 4.129 14 C -0.040 4.040 15 C -0.137 4.137 16 C 0.151 3.849 17 N -0.513 5.513 18 C 0.067 3.933 19 C -0.188 4.188 20 C -0.009 4.009 21 C 0.181 3.819 22 N -0.603 5.603 23 C -0.250 4.250 24 H 0.075 0.925 25 C -0.052 4.052 26 N -0.933 5.933 27 Si 0.953 3.047 28 H -0.298 1.298 29 H -0.294 1.294 30 H -0.260 1.260 31 H 0.037 0.963 32 H 0.079 0.921 33 H 0.044 0.956 34 H 0.051 0.949 35 H 0.098 0.902 36 H 0.076 0.924 37 H 0.087 0.913 38 H 0.412 0.588 39 H 0.160 0.840 40 H 0.181 0.819 41 H 0.186 0.814 42 H 0.210 0.790 43 H 0.158 0.842 44 H 0.142 0.858 45 H 0.039 0.961 46 H -0.002 1.002 47 H 0.243 0.757 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.666 -0.575 -14.388 22.791 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.048 3.952 3 H 0.041 0.959 4 C -0.157 4.157 5 C -0.145 4.145 6 C 0.025 3.975 7 H 0.069 0.931 8 N -0.351 5.351 9 C 0.337 3.663 10 O -0.459 6.459 11 C -0.166 4.166 12 C -0.057 4.057 13 C -0.146 4.146 14 C -0.060 4.060 15 C -0.139 4.139 16 C -0.020 4.020 17 N -0.221 5.221 18 C -0.075 4.075 19 C -0.207 4.207 20 C -0.015 4.015 21 C 0.054 3.946 22 N -0.328 5.328 23 C -0.380 4.380 24 H 0.092 0.908 25 C -0.247 4.247 26 N -0.580 5.580 27 Si 0.782 3.218 28 H -0.225 1.225 29 H -0.221 1.221 30 H -0.184 1.184 31 H 0.056 0.944 32 H 0.098 0.902 33 H 0.064 0.936 34 H 0.070 0.930 35 H 0.116 0.884 36 H 0.095 0.905 37 H 0.106 0.894 38 H 0.250 0.750 39 H 0.177 0.823 40 H 0.198 0.802 41 H 0.203 0.797 42 H 0.227 0.773 43 H 0.176 0.824 44 H 0.159 0.841 45 H 0.057 0.943 46 H 0.016 0.984 47 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges 17.367 -1.809 -13.306 21.953 hybrid contribution -1.244 0.233 0.999 1.612 sum 16.123 -1.576 -12.307 20.345 Atomic orbital electron populations 1.21739 0.94817 1.01098 1.01077 1.20822 0.94274 0.93443 0.86665 0.95879 1.21952 0.94583 1.00841 0.98350 1.21655 0.97120 1.00053 0.95648 1.21558 0.78825 0.99207 0.97887 0.93122 1.45775 1.07851 1.26725 1.54710 1.18642 0.88432 0.81293 0.77937 1.90630 1.64500 1.43971 1.46767 1.19825 0.91847 1.00639 1.04295 1.21953 0.94915 0.95067 0.93734 1.21361 0.93494 0.99669 1.00088 1.21738 1.01979 0.91002 0.91264 1.19353 0.92007 1.00368 1.02150 1.23985 1.01552 0.87816 0.88664 1.67477 1.06083 1.27336 1.21250 1.22410 0.90677 0.97251 0.97149 1.22784 1.03410 0.96481 0.98036 1.18215 0.94019 0.94240 0.95015 1.20740 0.83819 0.95183 0.94857 1.44326 1.02495 1.65755 1.20176 1.19482 0.95502 1.36472 0.86580 0.90764 1.25774 0.99040 1.00868 0.98993 1.70150 1.25640 1.45904 1.16298 0.85463 0.79489 0.78005 0.78812 1.22536 1.22069 1.18381 0.94388 0.90175 0.93650 0.93043 0.88387 0.90520 0.89429 0.74974 0.82284 0.80176 0.79697 0.77322 0.82443 0.84109 0.94261 0.98369 0.94761 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.66 7.95 71.98 0.57 -4.09 16 2 C 0.15 6.03 3.50 44.97 0.16 6.19 16 3 H 0.02 0.94 8.14 -2.39 -0.02 0.92 16 4 C -0.12 -3.59 5.37 30.67 0.16 -3.42 16 5 C -0.11 -3.04 5.35 30.62 0.16 -2.88 16 6 C 0.13 5.10 2.60 45.07 0.12 5.21 16 7 H 0.05 2.32 7.58 -2.39 -0.02 2.30 16 8 N -0.70 -22.58 5.03 -445.41 -2.24 -24.82 16 9 C 0.55 20.59 7.70 86.67 0.67 21.26 16 10 O -0.58 -27.72 13.16 -4.04 -0.05 -27.77 16 11 C -0.16 -4.80 5.90 -19.92 -0.12 -4.91 16 12 C -0.04 -0.66 9.51 22.58 0.21 -0.44 16 13 C -0.13 -1.46 9.92 21.99 0.22 -1.24 16 14 C -0.04 -0.49 9.79 22.36 0.22 -0.27 16 15 C -0.14 -3.00 5.74 -21.33 -0.12 -3.13 16 16 C 0.15 3.12 11.05 85.32 0.94 4.06 16 17 N -0.51 -14.29 10.30 -195.38 -2.01 -16.30 16 18 C 0.07 2.11 11.07 84.14 0.93 3.05 16 19 C -0.19 -6.77 9.28 22.32 0.21 -6.56 16 20 C -0.01 -0.28 5.77 -21.11 -0.12 -0.40 16 21 C 0.18 9.14 4.86 86.37 0.42 9.56 16 22 N -0.60 -30.73 2.99 -675.22 -2.02 -32.74 16 23 C -0.25 -14.16 8.57 84.03 0.72 -13.44 16 24 H 0.07 4.06 6.24 -2.91 -0.02 4.04 16 25 C -0.05 -3.06 4.95 84.86 0.42 -2.64 16 26 N -0.93 -58.90 11.21 21.65 0.24 -58.66 16 27 Si 0.95 48.41 29.58 68.60 2.03 50.44 16 28 H -0.30 -15.52 7.11 99.48 0.71 -14.81 16 29 H -0.29 -14.91 7.11 99.48 0.71 -14.20 16 30 H -0.26 -12.22 7.11 99.48 0.71 -11.51 16 31 H 0.04 1.52 7.62 -2.39 -0.02 1.50 16 32 H 0.08 2.19 8.14 -2.39 -0.02 2.17 16 33 H 0.04 1.68 7.44 -2.39 -0.02 1.66 16 34 H 0.05 1.69 8.14 -2.39 -0.02 1.67 16 35 H 0.10 2.23 8.14 -2.39 -0.02 2.21 16 36 H 0.08 1.97 8.14 -2.39 -0.02 1.95 16 37 H 0.09 1.96 8.14 -2.39 -0.02 1.94 16 38 H 0.41 9.35 6.67 -92.71 -0.62 8.74 16 39 H 0.16 1.83 6.43 -2.91 -0.02 1.81 16 40 H 0.18 0.47 8.06 -2.91 -0.02 0.45 16 41 H 0.19 0.48 8.06 -2.91 -0.02 0.46 16 42 H 0.21 2.08 8.06 -2.91 -0.02 2.06 16 43 H 0.16 4.48 8.06 -2.91 -0.02 4.45 16 44 H 0.14 6.09 5.06 -2.91 -0.01 6.07 16 45 H 0.04 2.41 6.13 -2.39 -0.01 2.39 16 46 H 0.00 -0.09 8.14 -2.39 -0.02 -0.11 16 47 H 0.24 15.14 8.31 -92.71 -0.77 14.37 16 Total: -1.00 -85.55 373.17 2.10 -83.44 By element: Atomic # 1 Polarization: 20.15 SS G_CDS: 0.38 Total: 20.53 kcal Atomic # 6 Polarization: 0.10 SS G_CDS: 5.77 Total: 5.88 kcal Atomic # 7 Polarization: -126.49 SS G_CDS: -6.03 Total: -132.52 kcal Atomic # 8 Polarization: -27.72 SS G_CDS: -0.05 Total: -27.77 kcal Atomic # 14 Polarization: 48.41 SS G_CDS: 2.03 Total: 50.44 kcal Total: -85.55 2.10 -83.44 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001072082337.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.737 kcal (2) G-P(sol) polarization free energy of solvation -85.546 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.190 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.103 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.443 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.294 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds