Wall clock time and date at job start Tue Mar 31 2020 22:13:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08999 * 109.58697 * 2 1 4 4 C 1.53198 * 109.58503 * 120.28012 * 2 1 3 5 5 C 1.53039 * 109.31327 * 174.56507 * 4 2 1 6 6 C 1.53039 * 109.53599 * 298.63711 * 5 4 2 7 7 H 1.09000 * 109.49636 * 301.37553 * 6 5 4 8 8 N 1.46507 * 109.49582 * 181.31617 * 6 5 4 9 9 C 1.34779 * 119.99909 * 154.99731 * 8 6 5 10 10 O 1.21599 * 120.00040 * 359.97438 * 9 8 6 11 11 C 1.47449 * 119.99833 * 180.02562 * 9 8 6 12 12 C 1.38860 * 120.46096 * 354.15033 * 11 9 8 13 13 C 1.38899 * 120.67510 * 179.97438 * 12 11 9 14 14 C 1.36377 * 121.27278 * 0.02562 * 13 12 11 15 15 C 1.40392 * 119.98706 * 359.97438 * 14 13 12 16 16 C 1.40462 * 121.95739 * 179.97438 * 15 14 13 17 17 N 1.31281 * 119.88551 * 180.02562 * 16 15 14 18 18 C 1.32548 * 122.73508 * 359.97438 * 17 16 15 19 19 C 1.36333 * 121.81580 * 0.27568 * 18 17 16 20 20 C 1.40290 * 118.70112 * 359.46494 * 19 18 17 21 21 C 1.53184 * 109.31798 * 61.36511 * 6 5 4 22 22 N 1.46926 * 108.77547 * 305.36544 * 21 6 5 23 23 C 1.36933 * 120.63316 * 233.62881 * 22 21 6 24 24 H 1.08002 * 120.00428 * 149.30727 * 23 22 21 25 25 C 1.38817 * 119.99831 * 329.31072 * 23 22 21 26 26 N 1.31623 * 119.99781 * 161.78180 * 25 23 22 27 27 Si 1.86800 * 119.99997 * 341.78541 * 25 23 22 28 28 H 1.48494 * 109.47103 * 89.95875 * 27 25 23 29 29 H 1.48502 * 109.46943 * 209.95893 * 27 25 23 30 30 H 1.48500 * 109.46894 * 329.95469 * 27 25 23 31 31 H 1.08999 * 109.47216 * 299.71904 * 1 2 3 32 32 H 1.09002 * 109.47304 * 59.72069 * 1 2 3 33 33 H 1.08999 * 109.47447 * 179.71924 * 1 2 3 34 34 H 1.09001 * 109.49899 * 54.61560 * 4 2 1 35 35 H 1.09004 * 109.52371 * 294.53032 * 4 2 1 36 36 H 1.08997 * 109.46181 * 178.61463 * 5 4 2 37 37 H 1.09005 * 109.46190 * 58.65467 * 5 4 2 38 38 H 0.96998 * 119.99806 * 334.99791 * 8 6 5 39 39 H 1.07998 * 119.66108 * 359.96032 * 12 11 9 40 40 H 1.08000 * 119.36612 * 180.02562 * 13 12 11 41 41 H 1.07998 * 120.00567 * 180.02562 * 14 13 12 42 42 H 1.08001 * 120.05603 * 0.04036 * 16 15 14 43 43 H 1.07997 * 119.09247 * 179.97438 * 18 17 16 44 44 H 1.08003 * 120.64881 * 179.69731 * 19 18 17 45 45 H 1.09005 * 109.58969 * 65.14823 * 21 6 5 46 46 H 1.08997 * 109.59273 * 185.57922 * 21 6 5 47 47 H 0.97003 * 119.99770 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8953 1.0269 0.0000 4 6 2.0435 -0.7278 1.2464 5 6 3.5677 -0.8433 1.1731 6 6 3.9602 -1.6608 -0.0597 7 1 3.5041 -2.6491 -0.0012 8 7 5.4180 -1.7975 -0.1119 9 6 5.9743 -2.8396 -0.7609 10 8 5.2663 -3.6665 -1.3027 11 6 7.4414 -2.9775 -0.8129 12 6 8.2608 -1.9792 -0.3029 13 6 9.6433 -2.1047 -0.3492 14 6 10.2364 -3.2052 -0.8940 15 6 9.4467 -4.2392 -1.4215 16 6 10.0138 -5.3904 -1.9925 17 7 9.2366 -6.3324 -2.4743 18 6 7.9137 -6.2527 -2.4492 19 6 7.2686 -5.1740 -1.9211 20 6 8.0335 -4.1292 -1.3815 21 6 3.4685 -0.9437 -1.3209 22 7 2.0254 -0.6991 -1.1935 23 6 1.1585 -1.1152 -2.1684 24 1 0.1488 -1.3975 -1.9087 25 6 1.5774 -1.1744 -3.4905 26 7 0.9024 -1.8923 -4.3632 27 14 3.0990 -0.2354 -4.0311 28 1 4.2963 -1.0992 -3.8720 29 1 2.9579 0.1575 -5.4562 30 1 3.2523 0.9822 -3.1948 31 1 -0.3633 0.5095 0.8925 32 1 -0.3634 0.5182 -0.8875 33 1 -0.3634 -1.0276 -0.0050 34 1 1.6049 -1.7246 1.2923 35 1 1.7637 -0.1658 2.1376 36 1 3.9380 -1.3390 2.0705 37 1 4.0045 0.1529 1.1023 38 1 5.9827 -1.1381 0.3206 39 1 7.8186 -1.0960 0.1339 40 1 10.2605 -1.3155 0.0541 41 1 11.3134 -3.2818 -0.9189 42 1 11.0873 -5.5006 -2.0350 43 1 7.3309 -7.0624 -2.8629 44 1 6.1896 -5.1266 -1.9148 45 1 3.9920 0.0063 -1.4287 46 1 3.6575 -1.5685 -2.1938 47 1 1.1949 -1.9333 -5.2872 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001072082338.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:13:58 Heat of formation + Delta-G solvation = 49.810107 kcal Electronic energy + Delta-G solvation = -29609.998591 eV Core-core repulsion = 25758.390748 eV Total energy + Delta-G solvation = -3851.607843 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -41.19276 -39.60422 -38.00682 -37.26642 -34.78758 -33.03370 -32.86996 -31.68399 -30.83807 -30.70824 -29.63874 -26.34927 -25.11424 -24.60616 -23.64001 -23.36032 -22.67031 -20.89301 -20.55671 -19.39191 -18.21164 -17.95608 -16.73858 -16.56480 -16.34697 -15.86143 -15.38516 -15.13534 -14.86748 -14.59948 -14.48214 -14.11440 -13.91340 -13.77427 -13.51676 -13.35486 -13.09899 -12.77299 -12.49651 -12.25948 -12.21122 -12.15460 -11.80351 -11.73293 -11.47430 -11.29548 -10.82201 -10.74679 -10.41669 -10.30149 -10.29221 -10.07155 -9.90531 -9.70620 -9.46922 -9.35555 -9.26096 -8.93830 -8.53012 -8.25065 -6.91089 -5.91599 -3.31401 -0.06804 0.67561 1.54543 2.55865 3.14323 3.26420 3.37556 3.48078 3.50825 3.96864 4.29231 4.33964 4.39348 4.49801 4.56513 4.68623 4.74935 4.85021 4.95378 5.09135 5.19191 5.21053 5.35334 5.41116 5.46822 5.49809 5.68315 5.70450 5.76140 5.82388 5.88754 5.95414 5.96659 6.08515 6.19350 6.19715 6.23407 6.31917 6.40786 6.45354 6.50375 6.52698 6.62845 6.67390 6.81257 6.98042 7.07555 7.58595 7.84819 8.00922 8.32841 8.39131 8.96110 9.75355 10.11560 11.23940 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.013637 B = 0.003552 C = 0.003183 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2052.793088 B = 7880.438535 C = 8793.874466 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.168 3.832 3 H 0.030 0.970 4 C -0.127 4.127 5 C -0.117 4.117 6 C 0.125 3.875 7 H 0.094 0.906 8 N -0.717 5.717 9 C 0.554 3.446 10 O -0.518 6.518 11 C -0.120 4.120 12 C -0.062 4.062 13 C -0.130 4.130 14 C -0.063 4.063 15 C -0.120 4.120 16 C 0.136 3.864 17 N -0.486 5.486 18 C 0.071 3.929 19 C -0.149 4.149 20 C 0.010 3.990 21 C 0.121 3.879 22 N -0.597 5.597 23 C -0.262 4.262 24 H 0.092 0.908 25 C 0.031 3.969 26 N -0.905 5.905 27 Si 0.879 3.121 28 H -0.287 1.287 29 H -0.303 1.303 30 H -0.273 1.273 31 H 0.040 0.960 32 H 0.064 0.936 33 H 0.058 0.942 34 H 0.066 0.934 35 H 0.060 0.940 36 H 0.058 0.942 37 H 0.060 0.940 38 H 0.393 0.607 39 H 0.132 0.868 40 H 0.133 0.867 41 H 0.136 0.864 42 H 0.163 0.837 43 H 0.156 0.844 44 H 0.179 0.821 45 H 0.022 0.978 46 H 0.080 0.920 47 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.177 0.635 12.589 22.120 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.062 3.938 3 H 0.047 0.953 4 C -0.167 4.167 5 C -0.155 4.155 6 C 0.020 3.980 7 H 0.112 0.888 8 N -0.368 5.368 9 C 0.341 3.659 10 O -0.396 6.396 11 C -0.123 4.123 12 C -0.082 4.082 13 C -0.148 4.148 14 C -0.083 4.083 15 C -0.122 4.122 16 C -0.036 4.036 17 N -0.194 5.194 18 C -0.071 4.071 19 C -0.168 4.168 20 C 0.004 3.996 21 C -0.006 4.006 22 N -0.321 5.321 23 C -0.390 4.390 24 H 0.109 0.891 25 C -0.169 4.169 26 N -0.548 5.548 27 Si 0.710 3.290 28 H -0.215 1.215 29 H -0.232 1.232 30 H -0.198 1.198 31 H 0.059 0.941 32 H 0.083 0.917 33 H 0.077 0.923 34 H 0.085 0.915 35 H 0.079 0.921 36 H 0.076 0.924 37 H 0.079 0.921 38 H 0.228 0.772 39 H 0.150 0.850 40 H 0.151 0.849 41 H 0.154 0.846 42 H 0.180 0.820 43 H 0.173 0.827 44 H 0.196 0.804 45 H 0.040 0.960 46 H 0.098 0.902 47 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 17.783 -0.812 11.610 21.253 hybrid contribution 0.940 1.679 0.096 1.926 sum 18.723 0.866 11.706 22.098 Atomic orbital electron populations 1.21802 0.95149 1.02043 1.00422 1.20516 0.93779 0.93319 0.86144 0.95281 1.22052 0.93921 1.01821 0.98915 1.21692 0.97744 0.99544 0.96521 1.21854 0.77398 1.01502 0.97245 0.88764 1.46076 1.08748 1.26507 1.55439 1.18029 0.86949 0.81871 0.79072 1.90665 1.62944 1.41291 1.44671 1.19998 0.93499 0.95797 1.02978 1.21494 0.93883 0.97365 0.95469 1.20817 0.94385 0.98714 1.00919 1.21155 0.99938 0.92328 0.94871 1.19025 0.93213 0.97551 1.02427 1.23148 0.99820 0.88037 0.92603 1.67396 1.06702 1.29578 1.15700 1.22383 0.89831 0.97814 0.97110 1.23051 1.04792 0.92746 0.96200 1.17957 0.92296 0.93780 0.95570 1.21709 0.85614 0.96843 0.96450 1.44362 1.01514 1.65343 1.20910 1.18887 0.96352 1.38509 0.85271 0.89055 1.25326 0.97287 0.98413 0.95838 1.69802 1.41171 1.39919 1.03898 0.86996 0.83857 0.81318 0.76842 1.21499 1.23159 1.19794 0.94093 0.91711 0.92328 0.91541 0.92133 0.92371 0.92120 0.77206 0.85045 0.84864 0.84569 0.82011 0.82673 0.80446 0.95977 0.90181 0.92764 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.45 7.96 37.15 0.30 -2.16 16 2 C 0.17 3.18 3.49 -67.60 -0.24 2.94 16 3 H 0.03 0.55 8.14 -51.93 -0.42 0.12 16 4 C -0.13 -1.95 5.37 -26.61 -0.14 -2.10 16 5 C -0.12 -1.65 5.35 -26.69 -0.14 -1.79 16 6 C 0.13 2.21 2.61 -67.81 -0.18 2.03 16 7 H 0.09 1.91 7.58 -51.93 -0.39 1.52 16 8 N -0.72 -10.57 5.03 -54.76 -0.28 -10.84 16 9 C 0.55 9.28 7.70 -12.51 -0.10 9.18 16 10 O -0.52 -10.76 13.16 5.28 0.07 -10.69 16 11 C -0.12 -1.65 5.90 -104.70 -0.62 -2.27 16 12 C -0.06 -0.61 9.51 -39.11 -0.37 -0.98 16 13 C -0.13 -1.03 9.92 -40.01 -0.40 -1.43 16 14 C -0.06 -0.52 9.79 -39.44 -0.39 -0.91 16 15 C -0.12 -1.38 5.74 -106.89 -0.61 -1.99 16 16 C 0.14 1.48 11.05 -16.95 -0.19 1.30 16 17 N -0.49 -6.48 10.30 -13.11 -0.14 -6.61 16 18 C 0.07 0.98 11.07 -17.93 -0.20 0.79 16 19 C -0.15 -2.29 9.28 -39.50 -0.37 -2.66 16 20 C 0.01 0.14 5.77 -106.55 -0.61 -0.47 16 21 C 0.12 2.66 3.77 -3.71 -0.01 2.65 16 22 N -0.60 -13.97 2.73 -164.78 -0.45 -14.42 16 23 C -0.26 -7.26 9.01 -15.06 -0.14 -7.40 16 24 H 0.09 2.66 6.45 -52.49 -0.34 2.32 16 25 C 0.03 0.91 5.25 -17.43 -0.09 0.82 16 26 N -0.91 -28.29 13.97 55.49 0.78 -27.52 16 27 Si 0.88 23.22 24.34 -169.99 -4.14 19.08 16 28 H -0.29 -7.65 6.56 56.52 0.37 -7.28 16 29 H -0.30 -8.13 7.11 56.52 0.40 -7.72 16 30 H -0.27 -6.96 6.76 56.52 0.38 -6.58 16 31 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 32 H 0.06 1.27 7.68 -51.93 -0.40 0.88 16 33 H 0.06 1.11 7.40 -51.93 -0.38 0.73 16 34 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 35 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 36 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 37 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 38 H 0.39 4.25 6.68 -40.82 -0.27 3.97 16 39 H 0.13 0.95 6.43 -52.49 -0.34 0.61 16 40 H 0.13 0.64 8.06 -52.49 -0.42 0.22 16 41 H 0.14 0.66 8.06 -52.49 -0.42 0.23 16 42 H 0.16 1.14 8.06 -52.49 -0.42 0.71 16 43 H 0.16 1.81 8.06 -52.49 -0.42 1.39 16 44 H 0.18 3.09 5.06 -52.48 -0.27 2.82 16 45 H 0.02 0.48 7.07 -51.93 -0.37 0.12 16 46 H 0.08 2.07 4.70 -51.93 -0.24 1.83 16 47 H 0.26 7.86 8.31 -40.82 -0.34 7.52 16 LS Contribution 366.94 15.07 5.53 5.53 Total: -1.00 -35.18 366.94 -9.53 -44.71 By element: Atomic # 1 Polarization: 11.64 SS G_CDS: -6.42 Total: 5.22 kcal Atomic # 6 Polarization: 0.04 SS G_CDS: -4.49 Total: -4.45 kcal Atomic # 7 Polarization: -59.31 SS G_CDS: -0.08 Total: -59.40 kcal Atomic # 8 Polarization: -10.76 SS G_CDS: 0.07 Total: -10.69 kcal Atomic # 14 Polarization: 23.22 SS G_CDS: -4.14 Total: 19.08 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -35.18 -9.53 -44.71 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001072082338.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.519 kcal (2) G-P(sol) polarization free energy of solvation -35.176 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.343 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.533 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.709 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.810 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds