Wall clock time and date at job start Tue Mar 31 2020 22:13:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08999 * 109.58697 * 2 1 4 4 C 1.53198 * 109.58503 * 120.28012 * 2 1 3 5 5 C 1.53039 * 109.31327 * 174.56507 * 4 2 1 6 6 C 1.53039 * 109.53599 * 298.63711 * 5 4 2 7 7 H 1.09000 * 109.49636 * 301.37553 * 6 5 4 8 8 N 1.46507 * 109.49582 * 181.31617 * 6 5 4 9 9 C 1.34779 * 119.99909 * 154.99731 * 8 6 5 10 10 O 1.21599 * 120.00040 * 359.97438 * 9 8 6 11 11 C 1.47449 * 119.99833 * 180.02562 * 9 8 6 12 12 C 1.38860 * 120.46096 * 354.15033 * 11 9 8 13 13 C 1.38899 * 120.67510 * 179.97438 * 12 11 9 14 14 C 1.36377 * 121.27278 * 0.02562 * 13 12 11 15 15 C 1.40392 * 119.98706 * 359.97438 * 14 13 12 16 16 C 1.40462 * 121.95739 * 179.97438 * 15 14 13 17 17 N 1.31281 * 119.88551 * 180.02562 * 16 15 14 18 18 C 1.32548 * 122.73508 * 359.97438 * 17 16 15 19 19 C 1.36333 * 121.81580 * 0.27568 * 18 17 16 20 20 C 1.40290 * 118.70112 * 359.46494 * 19 18 17 21 21 C 1.53184 * 109.31798 * 61.36511 * 6 5 4 22 22 N 1.46926 * 108.77547 * 305.36544 * 21 6 5 23 23 C 1.36933 * 120.63316 * 233.62881 * 22 21 6 24 24 H 1.08002 * 120.00428 * 149.30727 * 23 22 21 25 25 C 1.38817 * 119.99831 * 329.31072 * 23 22 21 26 26 N 1.31623 * 119.99781 * 161.78180 * 25 23 22 27 27 Si 1.86800 * 119.99997 * 341.78541 * 25 23 22 28 28 H 1.48494 * 109.47103 * 89.95875 * 27 25 23 29 29 H 1.48502 * 109.46943 * 209.95893 * 27 25 23 30 30 H 1.48500 * 109.46894 * 329.95469 * 27 25 23 31 31 H 1.08999 * 109.47216 * 299.71904 * 1 2 3 32 32 H 1.09002 * 109.47304 * 59.72069 * 1 2 3 33 33 H 1.08999 * 109.47447 * 179.71924 * 1 2 3 34 34 H 1.09001 * 109.49899 * 54.61560 * 4 2 1 35 35 H 1.09004 * 109.52371 * 294.53032 * 4 2 1 36 36 H 1.08997 * 109.46181 * 178.61463 * 5 4 2 37 37 H 1.09005 * 109.46190 * 58.65467 * 5 4 2 38 38 H 0.96998 * 119.99806 * 334.99791 * 8 6 5 39 39 H 1.07998 * 119.66108 * 359.96032 * 12 11 9 40 40 H 1.08000 * 119.36612 * 180.02562 * 13 12 11 41 41 H 1.07998 * 120.00567 * 180.02562 * 14 13 12 42 42 H 1.08001 * 120.05603 * 0.04036 * 16 15 14 43 43 H 1.07997 * 119.09247 * 179.97438 * 18 17 16 44 44 H 1.08003 * 120.64881 * 179.69731 * 19 18 17 45 45 H 1.09005 * 109.58969 * 65.14823 * 21 6 5 46 46 H 1.08997 * 109.59273 * 185.57922 * 21 6 5 47 47 H 0.97003 * 119.99770 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8953 1.0269 0.0000 4 6 2.0435 -0.7278 1.2464 5 6 3.5677 -0.8433 1.1731 6 6 3.9602 -1.6608 -0.0597 7 1 3.5041 -2.6491 -0.0012 8 7 5.4180 -1.7975 -0.1119 9 6 5.9743 -2.8396 -0.7609 10 8 5.2663 -3.6665 -1.3027 11 6 7.4414 -2.9775 -0.8129 12 6 8.2608 -1.9792 -0.3029 13 6 9.6433 -2.1047 -0.3492 14 6 10.2364 -3.2052 -0.8940 15 6 9.4467 -4.2392 -1.4215 16 6 10.0138 -5.3904 -1.9925 17 7 9.2366 -6.3324 -2.4743 18 6 7.9137 -6.2527 -2.4492 19 6 7.2686 -5.1740 -1.9211 20 6 8.0335 -4.1292 -1.3815 21 6 3.4685 -0.9437 -1.3209 22 7 2.0254 -0.6991 -1.1935 23 6 1.1585 -1.1152 -2.1684 24 1 0.1488 -1.3975 -1.9087 25 6 1.5774 -1.1744 -3.4905 26 7 0.9024 -1.8923 -4.3632 27 14 3.0990 -0.2354 -4.0311 28 1 4.2963 -1.0992 -3.8720 29 1 2.9579 0.1575 -5.4562 30 1 3.2523 0.9822 -3.1948 31 1 -0.3633 0.5095 0.8925 32 1 -0.3634 0.5182 -0.8875 33 1 -0.3634 -1.0276 -0.0050 34 1 1.6049 -1.7246 1.2923 35 1 1.7637 -0.1658 2.1376 36 1 3.9380 -1.3390 2.0705 37 1 4.0045 0.1529 1.1023 38 1 5.9827 -1.1381 0.3206 39 1 7.8186 -1.0960 0.1339 40 1 10.2605 -1.3155 0.0541 41 1 11.3134 -3.2818 -0.9189 42 1 11.0873 -5.5006 -2.0350 43 1 7.3309 -7.0624 -2.8629 44 1 6.1896 -5.1266 -1.9148 45 1 3.9920 0.0063 -1.4287 46 1 3.6575 -1.5685 -2.1938 47 1 1.1949 -1.9333 -5.2872 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001072082338.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:13:56 Heat of formation + Delta-G solvation = 24.451074 kcal Electronic energy + Delta-G solvation = -29611.098241 eV Core-core repulsion = 25758.390748 eV Total energy + Delta-G solvation = -3852.707493 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -42.15298 -40.85733 -39.45914 -38.17554 -36.25787 -34.71498 -33.96136 -32.82500 -32.62596 -31.88067 -30.62891 -27.91710 -26.76747 -25.61376 -24.75658 -24.43244 -24.08412 -22.25814 -21.82418 -20.95706 -19.14154 -18.94334 -18.52088 -17.79624 -17.39305 -17.22989 -16.77658 -16.46701 -16.15756 -16.07563 -15.55203 -15.36478 -15.22529 -15.04087 -14.82100 -14.64499 -14.47374 -14.32685 -13.79283 -13.58337 -13.47438 -13.13264 -13.04104 -12.93214 -12.78577 -12.68607 -12.56040 -12.52030 -12.09024 -11.78197 -11.75040 -11.43481 -11.33939 -11.22770 -10.99937 -10.80157 -10.40603 -10.26364 -10.15932 -9.16798 -8.86796 -8.19993 -5.53132 -0.92309 -0.17797 0.57370 1.22278 1.25763 1.36226 1.66999 1.95876 2.19194 2.36786 3.02954 3.05111 3.29067 3.44879 3.50445 3.59873 3.73966 3.78601 3.86773 3.91211 4.00194 4.07832 4.16713 4.24468 4.35205 4.36241 4.53470 4.57682 4.64696 4.69128 4.76823 4.82437 4.85572 4.89359 4.95160 4.99999 5.05076 5.09821 5.14806 5.22404 5.24505 5.33494 5.39541 5.50017 5.62841 5.64553 5.75537 5.88960 6.15951 6.45245 6.90430 6.90996 7.16617 7.61904 8.01267 8.99712 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.013637 B = 0.003552 C = 0.003183 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2052.793088 B = 7880.438535 C = 8793.874466 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.157 3.843 3 H 0.048 0.952 4 C -0.121 4.121 5 C -0.106 4.106 6 C 0.137 3.863 7 H 0.054 0.946 8 N -0.702 5.702 9 C 0.546 3.454 10 O -0.576 6.576 11 C -0.166 4.166 12 C -0.035 4.035 13 C -0.129 4.129 14 C -0.039 4.039 15 C -0.137 4.137 16 C 0.152 3.848 17 N -0.513 5.513 18 C 0.068 3.932 19 C -0.190 4.190 20 C -0.009 4.009 21 C 0.120 3.880 22 N -0.613 5.613 23 C -0.236 4.236 24 H 0.066 0.934 25 C -0.035 4.035 26 N -0.958 5.958 27 Si 0.941 3.059 28 H -0.301 1.301 29 H -0.311 1.311 30 H -0.250 1.250 31 H 0.085 0.915 32 H 0.037 0.963 33 H 0.035 0.965 34 H 0.047 0.953 35 H 0.104 0.896 36 H 0.091 0.909 37 H 0.089 0.911 38 H 0.416 0.584 39 H 0.162 0.838 40 H 0.182 0.818 41 H 0.186 0.814 42 H 0.210 0.790 43 H 0.159 0.841 44 H 0.143 0.857 45 H 0.036 0.964 46 H 0.031 0.969 47 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.188 4.072 16.444 28.717 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.053 3.947 3 H 0.066 0.934 4 C -0.160 4.160 5 C -0.144 4.144 6 C 0.030 3.970 7 H 0.073 0.927 8 N -0.354 5.354 9 C 0.335 3.665 10 O -0.457 6.457 11 C -0.170 4.170 12 C -0.055 4.055 13 C -0.147 4.147 14 C -0.058 4.058 15 C -0.139 4.139 16 C -0.020 4.020 17 N -0.222 5.222 18 C -0.073 4.073 19 C -0.209 4.209 20 C -0.015 4.015 21 C -0.006 4.006 22 N -0.339 5.339 23 C -0.366 4.366 24 H 0.084 0.916 25 C -0.229 4.229 26 N -0.605 5.605 27 Si 0.772 3.228 28 H -0.229 1.229 29 H -0.240 1.240 30 H -0.174 1.174 31 H 0.104 0.896 32 H 0.057 0.943 33 H 0.054 0.946 34 H 0.065 0.935 35 H 0.123 0.877 36 H 0.109 0.891 37 H 0.107 0.893 38 H 0.255 0.745 39 H 0.180 0.820 40 H 0.199 0.801 41 H 0.203 0.797 42 H 0.226 0.774 43 H 0.176 0.824 44 H 0.160 0.840 45 H 0.053 0.947 46 H 0.049 0.951 47 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 22.829 2.688 15.547 27.751 hybrid contribution -0.520 0.618 -0.971 1.263 sum 22.309 3.306 14.576 26.853 Atomic orbital electron populations 1.21755 0.94992 1.00858 1.01331 1.20901 0.94164 0.94144 0.85533 0.93390 1.21979 0.94676 1.00907 0.98440 1.21683 0.96907 1.00498 0.95340 1.21423 0.78925 0.99577 0.97048 0.92736 1.45805 1.07708 1.26732 1.55187 1.18711 0.88531 0.81290 0.77938 1.90665 1.64665 1.43393 1.47017 1.19803 0.91722 0.97968 1.07466 1.21974 0.94882 0.96371 0.92242 1.21371 0.93551 0.99723 1.00025 1.21753 1.02006 0.90470 0.91592 1.19353 0.92012 0.99155 1.03404 1.23990 1.01570 0.86756 0.89646 1.67477 1.06049 1.31016 1.17641 1.22428 0.90686 0.97471 0.96748 1.22799 1.03461 0.95024 0.99664 1.18219 0.94016 0.93596 0.95668 1.21626 0.85165 0.96789 0.97021 1.44563 1.01603 1.66318 1.21409 1.18892 0.95944 1.35584 0.86143 0.91639 1.25937 1.00382 1.00179 0.96401 1.69938 1.43729 1.42761 1.04040 0.85989 0.80308 0.80436 0.76113 1.22903 1.23973 1.17405 0.89620 0.94341 0.94555 0.93457 0.87725 0.89087 0.89271 0.74465 0.82035 0.80112 0.79721 0.77352 0.82385 0.83994 0.94665 0.95050 0.93364 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.64 7.96 71.98 0.57 -4.07 16 2 C 0.16 5.61 3.49 44.97 0.16 5.77 16 3 H 0.05 1.60 8.14 -2.39 -0.02 1.58 16 4 C -0.12 -3.30 5.37 30.67 0.16 -3.14 16 5 C -0.11 -2.58 5.35 30.62 0.16 -2.42 16 6 C 0.14 4.78 2.61 45.06 0.12 4.89 16 7 H 0.05 2.35 7.58 -2.39 -0.02 2.33 16 8 N -0.70 -20.06 5.03 -445.41 -2.24 -22.30 16 9 C 0.55 19.16 7.70 86.67 0.67 19.83 16 10 O -0.58 -26.71 13.16 -4.03 -0.05 -26.76 16 11 C -0.17 -4.54 5.90 -19.92 -0.12 -4.66 16 12 C -0.03 -0.55 9.51 22.58 0.21 -0.33 16 13 C -0.13 -1.23 9.92 21.99 0.22 -1.01 16 14 C -0.04 -0.41 9.79 22.36 0.22 -0.19 16 15 C -0.14 -2.81 5.74 -21.33 -0.12 -2.93 16 16 C 0.15 2.94 11.05 85.32 0.94 3.88 16 17 N -0.51 -13.71 10.30 -195.40 -2.01 -15.72 16 18 C 0.07 2.07 11.07 84.14 0.93 3.01 16 19 C -0.19 -6.55 9.28 22.32 0.21 -6.34 16 20 C -0.01 -0.27 5.77 -21.11 -0.12 -0.39 16 21 C 0.12 5.37 3.77 86.36 0.33 5.69 16 22 N -0.61 -29.11 2.73 -675.24 -1.84 -30.95 16 23 C -0.24 -13.74 9.01 84.04 0.76 -12.98 16 24 H 0.07 4.08 6.45 -2.91 -0.02 4.06 16 25 C -0.03 -2.15 5.25 84.86 0.45 -1.70 16 26 N -0.96 -64.09 13.97 21.65 0.30 -63.79 16 27 Si 0.94 50.68 24.34 68.60 1.67 52.35 16 28 H -0.30 -16.66 6.56 99.48 0.65 -16.00 16 29 H -0.31 -16.87 7.11 99.48 0.71 -16.16 16 30 H -0.25 -12.31 6.76 99.48 0.67 -11.64 16 31 H 0.09 2.23 8.14 -2.39 -0.02 2.21 16 32 H 0.04 1.52 7.68 -2.39 -0.02 1.50 16 33 H 0.04 1.41 7.40 -2.39 -0.02 1.39 16 34 H 0.05 1.49 8.14 -2.39 -0.02 1.47 16 35 H 0.10 2.04 8.14 -2.39 -0.02 2.02 16 36 H 0.09 1.72 8.14 -2.39 -0.02 1.70 16 37 H 0.09 1.74 8.14 -2.38 -0.02 1.73 16 38 H 0.42 7.55 6.68 -92.71 -0.62 6.93 16 39 H 0.16 1.42 6.43 -2.91 -0.02 1.41 16 40 H 0.18 0.15 8.06 -2.91 -0.02 0.13 16 41 H 0.19 0.24 8.06 -2.91 -0.02 0.21 16 42 H 0.21 1.86 8.06 -2.91 -0.02 1.84 16 43 H 0.16 4.30 8.06 -2.91 -0.02 4.28 16 44 H 0.14 5.87 5.06 -2.91 -0.01 5.85 16 45 H 0.04 1.47 7.07 -2.38 -0.02 1.46 16 46 H 0.03 1.71 4.70 -2.39 -0.01 1.70 16 47 H 0.26 16.58 8.31 -92.71 -0.77 15.81 16 Total: -1.00 -90.36 366.94 1.87 -88.50 By element: Atomic # 1 Polarization: 15.48 SS G_CDS: 0.30 Total: 15.78 kcal Atomic # 6 Polarization: -2.84 SS G_CDS: 5.74 Total: 2.90 kcal Atomic # 7 Polarization: -126.97 SS G_CDS: -5.79 Total: -132.76 kcal Atomic # 8 Polarization: -26.71 SS G_CDS: -0.05 Total: -26.76 kcal Atomic # 14 Polarization: 50.68 SS G_CDS: 1.67 Total: 52.35 kcal Total: -90.36 1.87 -88.50 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001072082338.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.947 kcal (2) G-P(sol) polarization free energy of solvation -90.362 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.585 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.866 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.496 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.451 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds