Wall clock time and date at job start Tue Mar 31 2020 22:14:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08998 * 109.58097 * 2 1 4 4 C 1.53195 * 109.70424 * 120.35494 * 2 1 3 5 5 C 1.53042 * 109.30982 * 174.49262 * 4 2 1 6 6 C 1.53048 * 109.53607 * 298.63286 * 5 4 2 7 7 H 1.08999 * 109.49250 * 181.31328 * 6 5 4 8 8 N 1.46496 * 109.49890 * 301.41789 * 6 5 4 9 9 C 1.34774 * 119.99930 * 205.00206 * 8 6 5 10 10 O 1.21608 * 119.99706 * 359.97438 * 9 8 6 11 11 C 1.47435 * 120.00240 * 179.97438 * 9 8 6 12 12 C 1.38952 * 121.17242 * 359.71727 * 11 9 8 13 13 N 1.32201 * 121.31711 * 179.68007 * 12 11 9 14 14 C 1.31195 * 123.69829 * 0.65256 * 13 12 11 15 15 C 1.40390 * 120.91442 * 359.64547 * 14 13 12 16 16 C 1.40390 * 122.14350 * 180.02562 * 15 14 13 17 17 C 1.36229 * 119.48324 * 179.97438 * 16 15 14 18 18 C 1.39287 * 121.10947 * 0.02562 * 17 16 15 19 19 C 1.36445 * 120.94732 * 359.97438 * 18 17 16 20 20 C 1.39694 * 119.43230 * 359.97438 * 19 18 17 21 21 C 1.53199 * 109.30756 * 61.36783 * 6 5 4 22 22 N 1.46921 * 109.58191 * 239.71918 * 2 1 3 23 23 C 1.36928 * 120.63410 * 6.43607 * 22 2 1 24 24 H 1.08006 * 120.00221 * 330.19323 * 23 22 2 25 25 C 1.38816 * 120.00095 * 150.19630 * 23 22 2 26 26 N 1.31621 * 119.99800 * 344.48785 * 25 23 22 27 27 Si 1.86803 * 120.00007 * 164.49010 * 25 23 22 28 28 H 1.48500 * 109.47230 * 359.97438 * 27 25 23 29 29 H 1.48501 * 109.46910 * 119.99808 * 27 25 23 30 30 H 1.48498 * 109.46945 * 239.99543 * 27 25 23 31 31 H 1.08998 * 109.46669 * 180.28880 * 1 2 3 32 32 H 1.09005 * 109.46541 * 300.28404 * 1 2 3 33 33 H 1.08996 * 109.47406 * 60.27887 * 1 2 3 34 34 H 1.08994 * 109.49451 * 54.54315 * 4 2 1 35 35 H 1.08999 * 109.49903 * 294.44567 * 4 2 1 36 36 H 1.08996 * 109.45975 * 178.61674 * 5 4 2 37 37 H 1.09004 * 109.46050 * 58.65528 * 5 4 2 38 38 H 0.96995 * 120.00260 * 25.00004 * 8 6 5 39 39 H 1.08002 * 119.33918 * 359.97438 * 12 11 9 40 40 H 1.08000 * 119.54325 * 179.66811 * 14 13 12 41 41 H 1.07998 * 120.26152 * 359.96575 * 16 15 14 42 42 H 1.08001 * 119.44828 * 179.97438 * 17 16 15 43 43 H 1.08000 * 119.53102 * 179.97438 * 18 17 16 44 44 H 1.08000 * 120.28363 * 179.97438 * 19 18 17 45 45 H 1.08994 * 109.58528 * 65.15534 * 21 6 5 46 46 H 1.09006 * 109.57717 * 185.43026 * 21 6 5 47 47 H 0.96999 * 119.99400 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8954 1.0269 0.0000 4 6 2.0466 -0.7288 1.2445 5 6 3.5707 -0.8443 1.1673 6 6 3.9602 -1.6608 -0.0671 7 1 5.0447 -1.7623 -0.1087 8 7 3.3466 -2.9887 0.0113 9 6 3.9045 -4.0284 -0.6401 10 8 4.9169 -3.8640 -1.2934 11 6 3.2873 -5.3650 -0.5607 12 6 2.1339 -5.5816 0.1832 13 7 1.5745 -6.7775 0.2513 14 6 2.0531 -7.8402 -0.3510 15 6 3.2175 -7.7639 -1.1315 16 6 3.7517 -8.8842 -1.7876 17 6 4.8846 -8.7484 -2.5318 18 6 5.5229 -7.5163 -2.6526 19 6 5.0310 -6.4071 -2.0285 20 6 3.8703 -6.5108 -1.2582 21 6 3.4653 -0.9424 -1.3265 22 7 2.0225 -0.6980 -1.1954 23 6 1.1533 -1.1133 -2.1685 24 1 0.1401 -1.3825 -1.9086 25 6 1.5743 -1.1883 -3.4892 26 7 2.6832 -0.5851 -3.8617 27 14 0.5669 -2.1454 -4.7376 28 1 -0.6259 -2.7263 -4.0706 29 1 0.1312 -1.2335 -5.8257 30 1 1.3949 -3.2376 -5.3091 31 1 -0.3632 -1.0277 0.0052 32 1 -0.3632 0.5183 0.8875 33 1 -0.3634 0.5095 -0.8924 34 1 1.6081 -1.7256 1.2905 35 1 1.7690 -0.1673 2.1365 36 1 3.9431 -1.3407 2.0633 37 1 4.0072 0.1520 1.0964 38 1 2.5389 -3.1198 0.5321 39 1 1.6827 -4.7553 0.7126 40 1 1.5439 -8.7868 -0.2453 41 1 3.2683 -9.8463 -1.7029 42 1 5.2953 -9.6107 -3.0360 43 1 6.4200 -7.4377 -3.2488 44 1 5.5348 -5.4571 -2.1292 45 1 3.9885 0.0076 -1.4347 46 1 3.6546 -1.5655 -2.2007 47 1 2.9771 -0.6372 -4.7846 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001072092763.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:14:46 Heat of formation + Delta-G solvation = 44.457890 kcal Electronic energy + Delta-G solvation = -30298.640979 eV Core-core repulsion = 26446.801046 eV Total energy + Delta-G solvation = -3851.839933 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -40.81120 -39.28767 -37.54045 -37.33274 -34.20667 -32.82191 -32.68986 -31.16705 -30.98255 -29.93791 -29.27296 -26.29086 -25.15678 -24.63841 -23.47513 -22.75368 -22.19059 -20.85173 -20.44356 -18.85667 -18.02048 -17.46406 -17.33410 -16.29670 -15.90971 -15.35056 -15.10192 -14.84406 -14.68030 -14.28349 -14.06861 -13.80911 -13.72697 -13.64793 -13.32908 -13.05473 -12.87917 -12.72603 -12.46829 -12.17530 -11.95150 -11.89819 -11.42666 -11.21818 -11.16711 -10.97559 -10.88351 -10.72234 -10.38835 -10.32849 -10.01138 -9.97046 -9.84363 -9.53583 -9.47329 -9.10612 -9.09961 -8.48806 -8.45324 -8.06418 -6.59925 -5.75562 -3.19610 0.10527 0.88156 1.71126 2.92052 3.37915 3.41237 3.46345 3.47184 3.58929 4.15290 4.25961 4.50367 4.51909 4.68907 4.69278 4.84991 5.05840 5.19396 5.22797 5.29512 5.34351 5.40829 5.48470 5.50412 5.58072 5.64636 5.74602 5.94978 5.98823 6.05770 6.10973 6.13755 6.31134 6.34095 6.34814 6.42207 6.48290 6.48515 6.57801 6.58802 6.67072 6.83063 6.90336 7.04820 7.11260 7.35691 7.66887 7.84404 7.86648 7.99897 8.48936 8.67407 9.23487 9.87796 10.43893 11.32502 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.010983 B = 0.004426 C = 0.003945 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2548.767932 B = 6325.083851 C = 7095.523325 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.165 3.835 3 H 0.025 0.975 4 C -0.131 4.131 5 C -0.119 4.119 6 C 0.118 3.882 7 H 0.078 0.922 8 N -0.690 5.690 9 C 0.565 3.435 10 O -0.539 6.539 11 C -0.157 4.157 12 C 0.116 3.884 13 N -0.494 5.494 14 C 0.165 3.835 15 C -0.120 4.120 16 C -0.094 4.094 17 C -0.119 4.119 18 C -0.104 4.104 19 C -0.104 4.104 20 C 0.010 3.990 21 C 0.163 3.837 22 N -0.582 5.582 23 C -0.250 4.250 24 H 0.068 0.932 25 C 0.008 3.992 26 N -0.898 5.898 27 Si 0.892 3.108 28 H -0.278 1.278 29 H -0.290 1.290 30 H -0.290 1.290 31 H 0.051 0.949 32 H 0.037 0.963 33 H 0.061 0.939 34 H 0.053 0.947 35 H 0.054 0.946 36 H 0.052 0.948 37 H 0.072 0.928 38 H 0.394 0.606 39 H 0.157 0.843 40 H 0.164 0.836 41 H 0.132 0.868 42 H 0.125 0.875 43 H 0.127 0.873 44 H 0.168 0.832 45 H 0.027 0.973 46 H 0.095 0.905 47 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.612 -12.582 9.294 15.859 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.058 3.942 3 H 0.043 0.957 4 C -0.170 4.170 5 C -0.157 4.157 6 C 0.012 3.988 7 H 0.096 0.904 8 N -0.340 5.340 9 C 0.351 3.649 10 O -0.418 6.418 11 C -0.162 4.162 12 C -0.028 4.028 13 N -0.201 5.201 14 C -0.007 4.007 15 C -0.122 4.122 16 C -0.114 4.114 17 C -0.137 4.137 18 C -0.124 4.124 19 C -0.121 4.121 20 C 0.004 3.996 21 C 0.036 3.964 22 N -0.306 5.306 23 C -0.379 4.379 24 H 0.086 0.914 25 C -0.191 4.191 26 N -0.542 5.542 27 Si 0.722 3.278 28 H -0.203 1.203 29 H -0.217 1.217 30 H -0.217 1.217 31 H 0.070 0.930 32 H 0.056 0.944 33 H 0.080 0.920 34 H 0.072 0.928 35 H 0.073 0.927 36 H 0.071 0.929 37 H 0.091 0.909 38 H 0.230 0.770 39 H 0.174 0.826 40 H 0.181 0.819 41 H 0.150 0.850 42 H 0.143 0.857 43 H 0.145 0.855 44 H 0.185 0.815 45 H 0.045 0.955 46 H 0.114 0.886 47 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 2.631 -12.306 9.201 15.589 hybrid contribution -0.205 -0.447 -1.123 1.226 sum 2.426 -12.754 8.078 15.290 Atomic orbital electron populations 1.21795 0.96075 1.01228 1.00226 1.20466 0.92921 0.93654 0.87116 0.95731 1.22073 0.95107 1.00643 0.99211 1.21700 0.97053 1.00229 0.96717 1.21851 0.97077 0.81363 0.98468 0.90377 1.45776 1.29157 1.08575 1.50445 1.17648 0.84078 0.83424 0.79714 1.90604 1.25440 1.84521 1.41282 1.22063 0.98348 0.94335 1.01447 1.22718 0.90969 0.94363 0.94725 1.67071 1.32534 0.99297 1.21243 1.23211 0.90819 0.97080 0.89567 1.19001 0.97901 0.94077 1.01250 1.20902 0.96327 0.97309 0.96883 1.20957 0.95916 0.97864 0.98968 1.21165 0.99963 0.92524 0.98728 1.21895 0.94637 1.01256 0.94293 1.18948 0.94605 0.90999 0.95002 1.21166 0.83838 0.97078 0.94338 1.44044 1.02611 1.64851 1.19068 1.19104 0.95088 1.37744 0.85999 0.91432 1.25048 0.97735 0.99376 0.96975 1.69995 1.24060 1.43562 1.16563 0.86385 0.79720 0.79830 0.81860 1.20297 1.21696 1.21671 0.92968 0.94410 0.92013 0.92805 0.92724 0.92947 0.90944 0.76961 0.82601 0.81938 0.84979 0.85729 0.85492 0.81520 0.95544 0.88646 0.93744 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.43 7.96 37.16 0.30 -2.14 16 2 C 0.17 3.19 3.49 -67.60 -0.24 2.95 16 3 H 0.03 0.51 8.14 -51.93 -0.42 0.08 16 4 C -0.13 -2.03 5.21 -26.61 -0.14 -2.17 16 5 C -0.12 -1.82 5.59 -26.68 -0.15 -1.97 16 6 C 0.12 2.19 2.81 -67.81 -0.19 2.00 16 7 H 0.08 1.47 7.58 -51.93 -0.39 1.08 16 8 N -0.69 -12.20 4.87 -54.76 -0.27 -12.47 16 9 C 0.57 10.79 7.74 -12.52 -0.10 10.69 16 10 O -0.54 -11.62 13.40 5.27 0.07 -11.55 16 11 C -0.16 -2.68 6.07 -102.66 -0.62 -3.30 16 12 C 0.12 1.78 10.71 -17.13 -0.18 1.59 16 13 N -0.49 -7.16 10.22 -12.58 -0.13 -7.29 16 14 C 0.17 2.04 11.00 -17.01 -0.19 1.85 16 15 C -0.12 -1.61 5.74 -106.89 -0.61 -2.22 16 16 C -0.09 -0.99 9.82 -39.49 -0.39 -1.38 16 17 C -0.12 -1.25 9.94 -39.91 -0.40 -1.65 16 18 C -0.10 -1.30 9.96 -39.84 -0.40 -1.70 16 19 C -0.10 -1.64 9.33 -39.68 -0.37 -2.01 16 20 C 0.01 0.16 5.91 -104.74 -0.62 -0.46 16 21 C 0.16 3.80 4.88 -3.71 -0.02 3.78 16 22 N -0.58 -13.63 2.90 -164.77 -0.48 -14.11 16 23 C -0.25 -6.56 8.57 -15.06 -0.13 -6.68 16 24 H 0.07 1.75 6.24 -52.48 -0.33 1.42 16 25 C 0.01 0.22 4.94 -17.43 -0.09 0.13 16 26 N -0.90 -26.29 11.23 55.49 0.62 -25.67 16 27 Si 0.89 22.29 29.58 -169.99 -5.03 17.27 16 28 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 29 H -0.29 -7.27 7.11 56.52 0.40 -6.86 16 30 H -0.29 -7.47 7.11 56.52 0.40 -7.07 16 31 H 0.05 0.94 7.43 -51.93 -0.39 0.56 16 32 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16 33 H 0.06 1.22 7.63 -51.93 -0.40 0.82 16 34 H 0.05 0.82 6.40 -51.93 -0.33 0.48 16 35 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 36 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 37 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 38 H 0.39 6.24 4.87 -40.82 -0.20 6.04 16 39 H 0.16 2.09 6.44 -52.49 -0.34 1.75 16 40 H 0.16 1.34 8.06 -52.49 -0.42 0.92 16 41 H 0.13 0.93 8.06 -52.49 -0.42 0.51 16 42 H 0.12 0.93 8.06 -52.49 -0.42 0.51 16 43 H 0.13 1.29 8.06 -52.49 -0.42 0.87 16 44 H 0.17 2.97 5.24 -52.49 -0.28 2.70 16 45 H 0.03 0.66 8.14 -51.93 -0.42 0.23 16 46 H 0.10 2.64 6.15 -51.93 -0.32 2.32 16 47 H 0.25 7.26 8.31 -40.82 -0.34 6.92 16 LS Contribution 370.56 15.07 5.58 5.58 Total: -1.00 -32.13 370.56 -10.48 -42.61 By element: Atomic # 1 Polarization: 14.64 SS G_CDS: -6.33 Total: 8.31 kcal Atomic # 6 Polarization: 1.84 SS G_CDS: -4.53 Total: -2.68 kcal Atomic # 7 Polarization: -59.29 SS G_CDS: -0.25 Total: -59.54 kcal Atomic # 8 Polarization: -11.62 SS G_CDS: 0.07 Total: -11.55 kcal Atomic # 14 Polarization: 22.29 SS G_CDS: -5.03 Total: 17.27 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -32.13 -10.48 -42.61 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001072092763.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.072 kcal (2) G-P(sol) polarization free energy of solvation -32.135 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.938 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.480 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.614 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.458 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds