Wall clock time and date at job start Tue Mar 31 2020 22:14:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08998 * 109.58097 * 2 1 4 4 C 1.53195 * 109.70424 * 120.35494 * 2 1 3 5 5 C 1.53042 * 109.30982 * 174.49262 * 4 2 1 6 6 C 1.53048 * 109.53607 * 298.63286 * 5 4 2 7 7 H 1.08999 * 109.49250 * 181.31328 * 6 5 4 8 8 N 1.46496 * 109.49890 * 301.41789 * 6 5 4 9 9 C 1.34774 * 119.99930 * 205.00206 * 8 6 5 10 10 O 1.21608 * 119.99706 * 359.97438 * 9 8 6 11 11 C 1.47435 * 120.00240 * 179.97438 * 9 8 6 12 12 C 1.38952 * 121.17242 * 359.71727 * 11 9 8 13 13 N 1.32201 * 121.31711 * 179.68007 * 12 11 9 14 14 C 1.31195 * 123.69829 * 0.65256 * 13 12 11 15 15 C 1.40390 * 120.91442 * 359.64547 * 14 13 12 16 16 C 1.40390 * 122.14350 * 180.02562 * 15 14 13 17 17 C 1.36229 * 119.48324 * 179.97438 * 16 15 14 18 18 C 1.39287 * 121.10947 * 0.02562 * 17 16 15 19 19 C 1.36445 * 120.94732 * 359.97438 * 18 17 16 20 20 C 1.39694 * 119.43230 * 359.97438 * 19 18 17 21 21 C 1.53199 * 109.30756 * 61.36783 * 6 5 4 22 22 N 1.46921 * 109.58191 * 239.71918 * 2 1 3 23 23 C 1.36928 * 120.63410 * 6.43607 * 22 2 1 24 24 H 1.08006 * 120.00221 * 330.19323 * 23 22 2 25 25 C 1.38816 * 120.00095 * 150.19630 * 23 22 2 26 26 N 1.31621 * 119.99800 * 344.48785 * 25 23 22 27 27 Si 1.86803 * 120.00007 * 164.49010 * 25 23 22 28 28 H 1.48500 * 109.47230 * 359.97438 * 27 25 23 29 29 H 1.48501 * 109.46910 * 119.99808 * 27 25 23 30 30 H 1.48498 * 109.46945 * 239.99543 * 27 25 23 31 31 H 1.08998 * 109.46669 * 180.28880 * 1 2 3 32 32 H 1.09005 * 109.46541 * 300.28404 * 1 2 3 33 33 H 1.08996 * 109.47406 * 60.27887 * 1 2 3 34 34 H 1.08994 * 109.49451 * 54.54315 * 4 2 1 35 35 H 1.08999 * 109.49903 * 294.44567 * 4 2 1 36 36 H 1.08996 * 109.45975 * 178.61674 * 5 4 2 37 37 H 1.09004 * 109.46050 * 58.65528 * 5 4 2 38 38 H 0.96995 * 120.00260 * 25.00004 * 8 6 5 39 39 H 1.08002 * 119.33918 * 359.97438 * 12 11 9 40 40 H 1.08000 * 119.54325 * 179.66811 * 14 13 12 41 41 H 1.07998 * 120.26152 * 359.96575 * 16 15 14 42 42 H 1.08001 * 119.44828 * 179.97438 * 17 16 15 43 43 H 1.08000 * 119.53102 * 179.97438 * 18 17 16 44 44 H 1.08000 * 120.28363 * 179.97438 * 19 18 17 45 45 H 1.08994 * 109.58528 * 65.15534 * 21 6 5 46 46 H 1.09006 * 109.57717 * 185.43026 * 21 6 5 47 47 H 0.96999 * 119.99400 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8954 1.0269 0.0000 4 6 2.0466 -0.7288 1.2445 5 6 3.5707 -0.8443 1.1673 6 6 3.9602 -1.6608 -0.0671 7 1 5.0447 -1.7623 -0.1087 8 7 3.3466 -2.9887 0.0113 9 6 3.9045 -4.0284 -0.6401 10 8 4.9169 -3.8640 -1.2934 11 6 3.2873 -5.3650 -0.5607 12 6 2.1339 -5.5816 0.1832 13 7 1.5745 -6.7775 0.2513 14 6 2.0531 -7.8402 -0.3510 15 6 3.2175 -7.7639 -1.1315 16 6 3.7517 -8.8842 -1.7876 17 6 4.8846 -8.7484 -2.5318 18 6 5.5229 -7.5163 -2.6526 19 6 5.0310 -6.4071 -2.0285 20 6 3.8703 -6.5108 -1.2582 21 6 3.4653 -0.9424 -1.3265 22 7 2.0225 -0.6980 -1.1954 23 6 1.1533 -1.1133 -2.1685 24 1 0.1401 -1.3825 -1.9086 25 6 1.5743 -1.1883 -3.4892 26 7 2.6832 -0.5851 -3.8617 27 14 0.5669 -2.1454 -4.7376 28 1 -0.6259 -2.7263 -4.0706 29 1 0.1312 -1.2335 -5.8257 30 1 1.3949 -3.2376 -5.3091 31 1 -0.3632 -1.0277 0.0052 32 1 -0.3632 0.5183 0.8875 33 1 -0.3634 0.5095 -0.8924 34 1 1.6081 -1.7256 1.2905 35 1 1.7690 -0.1673 2.1365 36 1 3.9431 -1.3407 2.0633 37 1 4.0072 0.1520 1.0964 38 1 2.5389 -3.1198 0.5321 39 1 1.6827 -4.7553 0.7126 40 1 1.5439 -8.7868 -0.2453 41 1 3.2683 -9.8463 -1.7029 42 1 5.2953 -9.6107 -3.0360 43 1 6.4200 -7.4377 -3.2488 44 1 5.5348 -5.4571 -2.1292 45 1 3.9885 0.0076 -1.4347 46 1 3.6546 -1.5655 -2.2007 47 1 2.9771 -0.6372 -4.7846 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001072092763.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:14:45 Heat of formation + Delta-G solvation = 24.408104 kcal Electronic energy + Delta-G solvation = -30299.510403 eV Core-core repulsion = 26446.801046 eV Total energy + Delta-G solvation = -3852.709357 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -41.93287 -40.69418 -39.09020 -38.34537 -35.85052 -34.55378 -33.87492 -32.35871 -32.16202 -31.76781 -30.41741 -27.90229 -26.87903 -25.86936 -24.50707 -23.98382 -23.75869 -22.21422 -21.95100 -20.45815 -19.15930 -18.64961 -18.43881 -18.11647 -17.23236 -16.79286 -16.58232 -16.11580 -15.99697 -15.76125 -15.60656 -15.25242 -15.09536 -14.80857 -14.68368 -14.42521 -14.32951 -14.07215 -13.68929 -13.61387 -13.17546 -13.04191 -12.93286 -12.89810 -12.66922 -12.56252 -12.45226 -12.36976 -12.14475 -12.08005 -11.59641 -11.24362 -11.10319 -11.07164 -11.01548 -10.57564 -10.38044 -10.10935 -10.02438 -9.13636 -8.58785 -7.85384 -5.30040 -0.95066 -0.14174 0.67116 1.33948 1.37952 1.45037 1.78319 2.13610 2.29422 2.46085 3.06241 3.23762 3.30774 3.51140 3.61702 3.67236 3.70754 3.88233 3.96468 4.05204 4.08588 4.17252 4.26301 4.31581 4.47241 4.49280 4.59786 4.65608 4.73994 4.75920 4.80121 4.94528 5.02165 5.02959 5.04346 5.10699 5.15600 5.25674 5.30816 5.39034 5.48874 5.54743 5.56674 5.60696 5.67376 5.72055 5.73056 5.90416 6.42155 6.57339 6.81265 7.16499 7.26155 7.90961 8.41436 9.19867 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.010983 B = 0.004426 C = 0.003945 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2548.767932 B = 6325.083851 C = 7095.523325 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.154 3.846 3 H 0.015 0.985 4 C -0.120 4.120 5 C -0.110 4.110 6 C 0.128 3.872 7 H 0.068 0.932 8 N -0.683 5.683 9 C 0.558 3.442 10 O -0.578 6.578 11 C -0.200 4.200 12 C 0.128 3.872 13 N -0.515 5.515 14 C 0.187 3.813 15 C -0.138 4.138 16 C -0.073 4.073 17 C -0.123 4.123 18 C -0.091 4.091 19 C -0.152 4.152 20 C -0.013 4.013 21 C 0.173 3.827 22 N -0.594 5.594 23 C -0.232 4.232 24 H 0.075 0.925 25 C -0.053 4.053 26 N -0.935 5.935 27 Si 0.943 3.057 28 H -0.261 1.261 29 H -0.291 1.291 30 H -0.307 1.307 31 H 0.050 0.950 32 H 0.076 0.924 33 H 0.034 0.966 34 H 0.061 0.939 35 H 0.093 0.907 36 H 0.086 0.914 37 H 0.076 0.924 38 H 0.405 0.595 39 H 0.168 0.832 40 H 0.214 0.786 41 H 0.182 0.818 42 H 0.166 0.834 43 H 0.144 0.856 44 H 0.131 0.869 45 H -0.001 1.001 46 H 0.044 0.956 47 H 0.242 0.758 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.586 -16.043 11.755 19.897 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.049 3.951 3 H 0.033 0.967 4 C -0.159 4.159 5 C -0.148 4.148 6 C 0.022 3.978 7 H 0.086 0.914 8 N -0.333 5.333 9 C 0.346 3.654 10 O -0.460 6.460 11 C -0.205 4.205 12 C -0.016 4.016 13 N -0.223 5.223 14 C 0.016 3.984 15 C -0.140 4.140 16 C -0.092 4.092 17 C -0.141 4.141 18 C -0.111 4.111 19 C -0.170 4.170 20 C -0.018 4.018 21 C 0.046 3.954 22 N -0.318 5.318 23 C -0.363 4.363 24 H 0.093 0.907 25 C -0.248 4.248 26 N -0.582 5.582 27 Si 0.773 3.227 28 H -0.185 1.185 29 H -0.218 1.218 30 H -0.235 1.235 31 H 0.069 0.931 32 H 0.095 0.905 33 H 0.053 0.947 34 H 0.080 0.920 35 H 0.111 0.889 36 H 0.104 0.896 37 H 0.094 0.906 38 H 0.243 0.757 39 H 0.185 0.815 40 H 0.230 0.770 41 H 0.199 0.801 42 H 0.184 0.816 43 H 0.161 0.839 44 H 0.149 0.851 45 H 0.017 0.983 46 H 0.063 0.937 47 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges 0.559 -15.763 11.718 19.649 hybrid contribution 0.450 0.513 -1.886 2.006 sum 1.010 -15.250 9.831 18.173 Atomic orbital electron populations 1.21726 0.94695 1.01326 1.00852 1.20781 0.94167 0.93271 0.86907 0.96697 1.21970 0.94659 1.01034 0.98230 1.21676 0.97349 0.99978 0.95811 1.21555 0.96448 0.81954 0.97874 0.91432 1.45663 1.29449 1.07849 1.50363 1.18171 0.83685 0.84664 0.78871 1.90592 1.27236 1.85348 1.42843 1.21939 1.00238 0.93572 1.04744 1.22895 0.89845 0.95374 0.93472 1.67210 1.32941 0.99436 1.22716 1.24063 0.89628 0.98094 0.86620 1.19351 0.98526 0.93774 1.02387 1.21489 0.95490 0.98057 0.94162 1.21399 0.95842 0.97865 0.98995 1.21498 1.00073 0.92555 0.96933 1.21691 0.96249 1.01289 0.97774 1.19224 0.95056 0.92264 0.95255 1.20822 0.84250 0.95281 0.95034 1.44252 1.02120 1.65541 1.19891 1.19415 0.95396 1.35210 0.86302 0.90713 1.25692 0.98941 1.01239 0.98912 1.70157 1.26006 1.46023 1.16021 0.85548 0.78777 0.78218 0.80163 1.18513 1.21794 1.23529 0.93070 0.90503 0.94670 0.92008 0.88902 0.89561 0.90581 0.75741 0.81465 0.76989 0.80067 0.81637 0.83860 0.85139 0.98328 0.93712 0.94893 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.36 7.96 71.98 0.57 -3.78 16 2 C 0.15 5.79 3.49 44.98 0.16 5.95 16 3 H 0.02 0.61 8.14 -2.39 -0.02 0.59 16 4 C -0.12 -3.37 5.21 30.67 0.16 -3.21 16 5 C -0.11 -3.19 5.59 30.62 0.17 -3.01 16 6 C 0.13 4.92 2.81 45.07 0.13 5.05 16 7 H 0.07 2.73 7.58 -2.39 -0.02 2.72 16 8 N -0.68 -24.99 4.87 -445.41 -2.17 -27.16 16 9 C 0.56 22.89 7.74 86.67 0.67 23.56 16 10 O -0.58 -27.68 13.40 -4.05 -0.05 -27.74 16 11 C -0.20 -7.12 6.07 -18.60 -0.11 -7.23 16 12 C 0.13 3.84 10.71 84.81 0.91 4.75 16 13 N -0.52 -13.76 10.22 -193.72 -1.98 -15.74 16 14 C 0.19 3.93 11.00 85.31 0.94 4.87 16 15 C -0.14 -3.36 5.74 -21.33 -0.12 -3.49 16 16 C -0.07 -1.20 9.82 22.33 0.22 -0.98 16 17 C -0.12 -2.15 9.94 22.05 0.22 -1.93 16 18 C -0.09 -2.24 9.96 22.10 0.22 -2.02 16 19 C -0.15 -5.16 9.33 22.20 0.21 -4.95 16 20 C -0.01 -0.43 5.91 -19.94 -0.12 -0.54 16 21 C 0.17 8.64 4.88 86.37 0.42 9.06 16 22 N -0.59 -28.59 2.90 -675.22 -1.96 -30.55 16 23 C -0.23 -12.53 8.57 84.04 0.72 -11.81 16 24 H 0.08 3.88 6.24 -2.91 -0.02 3.86 16 25 C -0.05 -3.08 4.94 84.86 0.42 -2.66 16 26 N -0.93 -58.52 11.23 21.65 0.24 -58.28 16 27 Si 0.94 47.65 29.58 68.60 2.03 49.68 16 28 H -0.26 -12.30 7.11 99.48 0.71 -11.59 16 29 H -0.29 -14.58 7.11 99.48 0.71 -13.87 16 30 H -0.31 -16.23 7.11 99.48 0.71 -15.52 16 31 H 0.05 1.73 7.43 -2.39 -0.02 1.71 16 32 H 0.08 2.01 8.14 -2.38 -0.02 1.99 16 33 H 0.03 1.35 7.63 -2.39 -0.02 1.33 16 34 H 0.06 1.67 6.40 -2.39 -0.02 1.65 16 35 H 0.09 2.01 8.14 -2.39 -0.02 1.99 16 36 H 0.09 2.00 8.14 -2.39 -0.02 1.98 16 37 H 0.08 2.18 8.14 -2.38 -0.02 2.16 16 38 H 0.40 12.69 4.87 -92.71 -0.45 12.24 16 39 H 0.17 4.34 6.44 -2.91 -0.02 4.32 16 40 H 0.21 2.18 8.06 -2.91 -0.02 2.16 16 41 H 0.18 1.23 8.06 -2.91 -0.02 1.20 16 42 H 0.17 1.56 8.06 -2.91 -0.02 1.54 16 43 H 0.14 2.86 8.06 -2.91 -0.02 2.84 16 44 H 0.13 5.32 5.24 -2.91 -0.02 5.30 16 45 H 0.00 -0.07 8.14 -2.39 -0.02 -0.09 16 46 H 0.04 2.69 6.15 -2.38 -0.01 2.68 16 47 H 0.24 14.99 8.31 -92.71 -0.77 14.22 16 Total: -1.00 -79.18 370.56 2.44 -76.74 By element: Atomic # 1 Polarization: 24.87 SS G_CDS: 0.55 Total: 25.42 kcal Atomic # 6 Polarization: 1.85 SS G_CDS: 5.78 Total: 7.63 kcal Atomic # 7 Polarization: -125.87 SS G_CDS: -5.87 Total: -131.74 kcal Atomic # 8 Polarization: -27.68 SS G_CDS: -0.05 Total: -27.74 kcal Atomic # 14 Polarization: 47.65 SS G_CDS: 2.03 Total: 49.68 kcal Total: -79.18 2.44 -76.74 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001072092763.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.152 kcal (2) G-P(sol) polarization free energy of solvation -79.182 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.970 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.438 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.744 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.408 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds