Wall clock time and date at job start Tue Mar 31 2020 22:14:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09003 * 109.58757 * 2 1 4 4 C 1.53198 * 109.58588 * 239.57321 * 2 1 3 5 5 C 1.53039 * 109.31147 * 185.57765 * 4 2 1 6 6 C 1.53031 * 109.53936 * 61.36560 * 5 4 2 7 7 H 1.09002 * 109.52858 * 178.66125 * 6 5 4 8 8 N 1.46498 * 109.50001 * 58.58291 * 6 5 4 9 9 C 1.34780 * 120.00397 * 155.15943 * 8 6 5 10 10 O 1.21597 * 119.99527 * 0.02562 * 9 8 6 11 11 C 1.47450 * 119.99950 * 180.02562 * 9 8 6 12 12 C 1.38946 * 121.16973 * 359.97438 * 11 9 8 13 13 N 1.32205 * 121.31731 * 180.02562 * 12 11 9 14 14 C 1.31194 * 123.69333 * 0.02562 * 13 12 11 15 15 C 1.40387 * 120.91306 * 359.97438 * 14 13 12 16 16 C 1.40399 * 122.13432 * 180.02562 * 15 14 13 17 17 C 1.36221 * 119.48728 * 179.97438 * 16 15 14 18 18 C 1.39297 * 121.10215 * 0.02562 * 17 16 15 19 19 C 1.36433 * 120.94938 * 359.97438 * 18 17 16 20 20 C 1.39691 * 119.43861 * 0.27490 * 19 18 17 21 21 C 1.53195 * 109.31415 * 298.63395 * 6 5 4 22 22 N 1.46925 * 109.58639 * 120.28400 * 2 1 3 23 23 C 1.36934 * 120.63191 * 353.37121 * 22 2 1 24 24 H 1.08003 * 119.99531 * 29.53959 * 23 22 2 25 25 C 1.38808 * 120.00100 * 209.53341 * 23 22 2 26 26 N 1.31615 * 119.99942 * 15.62199 * 25 23 22 27 27 Si 1.86797 * 120.00036 * 195.61546 * 25 23 22 28 28 H 1.48503 * 109.47305 * 94.72493 * 27 25 23 29 29 H 1.48501 * 109.47219 * 214.72318 * 27 25 23 30 30 H 1.48502 * 109.47070 * 334.72328 * 27 25 23 31 31 H 1.09006 * 109.47054 * 299.71936 * 1 2 3 32 32 H 1.09005 * 109.47117 * 59.71006 * 1 2 3 33 33 H 1.08993 * 109.47559 * 179.71482 * 1 2 3 34 34 H 1.08997 * 109.49625 * 305.53381 * 4 2 1 35 35 H 1.09002 * 109.49571 * 65.62716 * 4 2 1 36 36 H 1.09001 * 109.46043 * 301.34554 * 5 4 2 37 37 H 1.09006 * 109.45640 * 181.38432 * 5 4 2 38 38 H 0.97007 * 120.00052 * 335.16812 * 8 6 5 39 39 H 1.07994 * 119.34640 * 0.02562 * 12 11 9 40 40 H 1.07999 * 119.54374 * 179.97438 * 14 13 12 41 41 H 1.08004 * 120.25585 * 359.94902 * 16 15 14 42 42 H 1.08005 * 119.45247 * 179.97438 * 17 16 15 43 43 H 1.08003 * 119.51930 * 179.97438 * 18 17 16 44 44 H 1.08003 * 120.28028 * 179.97438 * 19 18 17 45 45 H 1.08997 * 109.58599 * 174.42195 * 21 6 5 46 46 H 1.08996 * 109.58498 * 294.84747 * 21 6 5 47 47 H 0.96998 * 120.00232 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8954 1.0269 0.0000 4 6 2.0435 -0.7310 -1.2446 5 6 3.5675 -0.8495 -1.1691 6 6 3.9569 -1.6656 0.0654 7 1 5.0411 -1.7701 0.1060 8 7 3.3405 -2.9924 -0.0111 9 6 3.8952 -4.0320 0.6432 10 8 4.9071 -3.8685 1.2974 11 6 3.2750 -5.3675 0.5656 12 6 2.1186 -5.5815 -0.1743 13 7 1.5598 -6.7776 -0.2454 14 6 2.0347 -7.8399 0.3605 15 6 3.1986 -7.7647 1.1419 16 6 3.7294 -8.8850 1.8008 17 6 4.8625 -8.7508 2.5450 18 6 5.5037 -7.5199 2.6638 19 6 5.0152 -6.4109 2.0369 20 6 3.8521 -6.5121 1.2700 21 6 3.4650 -0.9453 1.3248 22 7 2.0225 -0.6981 1.1953 23 6 1.1537 -1.1099 2.1704 24 1 0.1382 -1.3725 1.9129 25 6 1.5783 -1.1901 3.4895 26 7 2.6908 -0.5925 3.8602 27 14 0.5705 -2.1459 4.7386 28 1 1.1013 -3.5284 4.8493 29 1 0.6560 -1.4755 6.0609 30 1 -0.8471 -2.1937 4.2985 31 1 -0.3633 0.5095 0.8925 32 1 -0.3634 0.5184 -0.8874 33 1 -0.3634 -1.0276 -0.0051 34 1 1.6029 -1.7269 -1.2892 35 1 1.7660 -0.1695 -2.1367 36 1 4.0061 0.1460 -1.0995 37 1 3.9377 -1.3475 -2.0653 38 1 2.5331 -3.1228 -0.5328 39 1 1.6671 -4.7544 -0.7018 40 1 1.5232 -8.7854 0.2567 41 1 3.2428 -9.8458 1.7187 42 1 5.2701 -9.6130 3.0520 43 1 6.4004 -7.4425 3.2607 44 1 5.5209 -5.4618 2.1368 45 1 3.6518 -1.5690 2.1990 46 1 3.9903 0.0038 1.4316 47 1 2.9877 -0.6488 4.7820 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001072092764.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:14:50 Heat of formation + Delta-G solvation = 44.550793 kcal Electronic energy + Delta-G solvation = -30305.335267 eV Core-core repulsion = 26453.499363 eV Total energy + Delta-G solvation = -3851.835904 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -40.80861 -39.28652 -37.54017 -37.33047 -34.20605 -32.82172 -32.69062 -31.16438 -30.98190 -29.93563 -29.27117 -26.28814 -25.15555 -24.63584 -23.47323 -22.75086 -22.18947 -20.84939 -20.44239 -18.85481 -18.01801 -17.46189 -17.33168 -16.29467 -15.90798 -15.35175 -15.10032 -14.84000 -14.67882 -14.28160 -14.07043 -13.80795 -13.72291 -13.64765 -13.32896 -13.05338 -12.87657 -12.72292 -12.46735 -12.17291 -11.94995 -11.89624 -11.42439 -11.21684 -11.16758 -10.96883 -10.88431 -10.72491 -10.38714 -10.33390 -10.00950 -9.97049 -9.84195 -9.53543 -9.47197 -9.10190 -9.09872 -8.48632 -8.44890 -8.06223 -6.60480 -5.75233 -3.19284 0.10849 0.88428 1.71442 2.92295 3.38719 3.41433 3.45573 3.47104 3.59259 4.15510 4.26290 4.50501 4.52151 4.69153 4.69557 4.85205 5.06068 5.19615 5.23016 5.29487 5.34486 5.40930 5.48497 5.50573 5.58167 5.64873 5.74850 5.95238 5.98871 6.05921 6.11079 6.13688 6.31092 6.34062 6.34997 6.42201 6.48423 6.48691 6.57947 6.58895 6.67242 6.83248 6.90525 7.04725 7.11288 7.36034 7.67182 7.84279 7.86811 8.00102 8.49002 8.67675 9.23584 9.87930 10.43843 11.32726 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.010985 B = 0.004432 C = 0.003950 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2548.244700 B = 6316.141873 C = 7086.303494 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.165 3.835 3 H 0.025 0.975 4 C -0.131 4.131 5 C -0.119 4.119 6 C 0.118 3.882 7 H 0.078 0.922 8 N -0.690 5.690 9 C 0.565 3.435 10 O -0.539 6.539 11 C -0.157 4.157 12 C 0.116 3.884 13 N -0.494 5.494 14 C 0.165 3.835 15 C -0.120 4.120 16 C -0.094 4.094 17 C -0.119 4.119 18 C -0.104 4.104 19 C -0.104 4.104 20 C 0.010 3.990 21 C 0.162 3.838 22 N -0.583 5.583 23 C -0.250 4.250 24 H 0.068 0.932 25 C 0.008 3.992 26 N -0.898 5.898 27 Si 0.893 3.107 28 H -0.289 1.289 29 H -0.291 1.291 30 H -0.279 1.279 31 H 0.061 0.939 32 H 0.037 0.963 33 H 0.051 0.949 34 H 0.053 0.947 35 H 0.054 0.946 36 H 0.072 0.928 37 H 0.052 0.948 38 H 0.394 0.606 39 H 0.157 0.843 40 H 0.164 0.836 41 H 0.132 0.868 42 H 0.125 0.875 43 H 0.127 0.873 44 H 0.168 0.832 45 H 0.096 0.904 46 H 0.027 0.973 47 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.555 -12.551 -9.253 15.801 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.058 3.942 3 H 0.043 0.957 4 C -0.170 4.170 5 C -0.157 4.157 6 C 0.012 3.988 7 H 0.096 0.904 8 N -0.340 5.340 9 C 0.352 3.648 10 O -0.418 6.418 11 C -0.162 4.162 12 C -0.028 4.028 13 N -0.201 5.201 14 C -0.007 4.007 15 C -0.122 4.122 16 C -0.114 4.114 17 C -0.137 4.137 18 C -0.124 4.124 19 C -0.121 4.121 20 C 0.005 3.995 21 C 0.035 3.965 22 N -0.306 5.306 23 C -0.380 4.380 24 H 0.086 0.914 25 C -0.191 4.191 26 N -0.542 5.542 27 Si 0.723 3.277 28 H -0.216 1.216 29 H -0.218 1.218 30 H -0.204 1.204 31 H 0.080 0.920 32 H 0.056 0.944 33 H 0.070 0.930 34 H 0.072 0.928 35 H 0.073 0.927 36 H 0.091 0.909 37 H 0.071 0.929 38 H 0.230 0.770 39 H 0.174 0.826 40 H 0.181 0.819 41 H 0.150 0.850 42 H 0.143 0.857 43 H 0.145 0.855 44 H 0.185 0.815 45 H 0.114 0.886 46 H 0.045 0.955 47 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 2.575 -12.268 -9.158 15.524 hybrid contribution -0.212 -0.459 1.117 1.226 sum 2.363 -12.728 -8.041 15.239 Atomic orbital electron populations 1.21798 0.96092 1.01224 1.00229 1.20467 0.92922 0.93648 0.87122 0.95708 1.22073 0.95107 1.00638 0.99205 1.21697 0.97062 1.00227 0.96712 1.21849 0.97032 0.81401 0.98473 0.90390 1.45780 1.29211 1.08649 1.50331 1.17648 0.84081 0.83405 0.79715 1.90601 1.25472 1.84489 1.41267 1.22066 0.98352 0.94383 1.01395 1.22714 0.90929 0.94364 0.94772 1.67073 1.32580 0.99285 1.21212 1.23209 0.90838 0.97087 0.89549 1.19003 0.97927 0.94063 1.01249 1.20904 0.96339 0.97311 0.96868 1.20958 0.95907 0.97873 0.98974 1.21164 0.99983 0.92537 0.98695 1.21889 0.94606 1.01241 0.94347 1.18946 0.94623 0.91010 0.94949 1.21180 0.83836 0.97060 0.94375 1.44051 1.02676 1.64876 1.18980 1.19086 0.94896 1.37960 0.86030 0.91426 1.25036 0.97740 0.99402 0.96957 1.69984 1.23844 1.43606 1.16764 0.86418 0.79861 0.80022 0.81379 1.21634 1.21755 1.20405 0.92018 0.94408 0.92974 0.92799 0.92725 0.90944 0.92950 0.76973 0.82597 0.81936 0.84978 0.85725 0.85489 0.81525 0.88580 0.95542 0.93702 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.44 7.95 37.16 0.30 -2.14 16 2 C 0.17 3.19 3.50 -67.60 -0.24 2.95 16 3 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 4 C -0.13 -2.03 5.21 -26.61 -0.14 -2.16 16 5 C -0.12 -1.82 5.58 -26.69 -0.15 -1.97 16 6 C 0.12 2.19 2.81 -67.81 -0.19 2.00 16 7 H 0.08 1.47 7.58 -51.93 -0.39 1.08 16 8 N -0.69 -12.22 4.87 -54.76 -0.27 -12.49 16 9 C 0.57 10.82 7.74 -12.51 -0.10 10.73 16 10 O -0.54 -11.64 13.40 5.28 0.07 -11.57 16 11 C -0.16 -2.69 6.07 -102.66 -0.62 -3.31 16 12 C 0.12 1.78 10.71 -17.13 -0.18 1.60 16 13 N -0.49 -7.18 10.22 -12.58 -0.13 -7.31 16 14 C 0.17 2.04 11.00 -17.02 -0.19 1.86 16 15 C -0.12 -1.62 5.74 -106.89 -0.61 -2.23 16 16 C -0.09 -1.00 9.82 -39.49 -0.39 -1.39 16 17 C -0.12 -1.26 9.94 -39.91 -0.40 -1.65 16 18 C -0.10 -1.31 9.96 -39.84 -0.40 -1.71 16 19 C -0.10 -1.64 9.32 -39.69 -0.37 -2.01 16 20 C 0.01 0.17 5.91 -104.75 -0.62 -0.45 16 21 C 0.16 3.79 4.88 -3.71 -0.02 3.77 16 22 N -0.58 -13.63 2.91 -164.77 -0.48 -14.11 16 23 C -0.25 -6.56 8.58 -15.06 -0.13 -6.69 16 24 H 0.07 1.75 6.23 -52.48 -0.33 1.42 16 25 C 0.01 0.22 4.94 -17.43 -0.09 0.13 16 26 N -0.90 -26.29 11.21 55.49 0.62 -25.67 16 27 Si 0.89 22.32 29.58 -169.99 -5.03 17.29 16 28 H -0.29 -7.43 7.11 56.52 0.40 -7.03 16 29 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16 30 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 31 H 0.06 1.22 7.62 -51.93 -0.40 0.83 16 32 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16 33 H 0.05 0.94 7.44 -51.93 -0.39 0.55 16 34 H 0.05 0.82 6.40 -51.93 -0.33 0.48 16 35 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 36 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 37 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 38 H 0.39 6.25 4.88 -40.82 -0.20 6.05 16 39 H 0.16 2.09 6.44 -52.49 -0.34 1.75 16 40 H 0.16 1.35 8.06 -52.49 -0.42 0.93 16 41 H 0.13 0.94 8.06 -52.48 -0.42 0.51 16 42 H 0.12 0.93 8.06 -52.48 -0.42 0.51 16 43 H 0.13 1.29 8.06 -52.48 -0.42 0.87 16 44 H 0.17 2.98 5.24 -52.48 -0.28 2.71 16 45 H 0.10 2.66 6.13 -51.93 -0.32 2.34 16 46 H 0.03 0.66 8.14 -51.93 -0.42 0.23 16 47 H 0.25 7.29 8.31 -40.82 -0.34 6.95 16 LS Contribution 370.52 15.07 5.58 5.58 Total: -1.00 -32.13 370.52 -10.48 -42.61 By element: Atomic # 1 Polarization: 14.68 SS G_CDS: -6.33 Total: 8.35 kcal Atomic # 6 Polarization: 1.84 SS G_CDS: -4.53 Total: -2.69 kcal Atomic # 7 Polarization: -59.33 SS G_CDS: -0.25 Total: -59.58 kcal Atomic # 8 Polarization: -11.64 SS G_CDS: 0.07 Total: -11.57 kcal Atomic # 14 Polarization: 22.32 SS G_CDS: -5.03 Total: 17.29 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -32.13 -10.48 -42.61 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001072092764.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.160 kcal (2) G-P(sol) polarization free energy of solvation -32.128 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.031 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.481 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.609 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.551 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds