Wall clock time and date at job start Tue Mar 31 2020 22:14:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08998 * 109.58438 * 2 1 4 4 C 1.53190 * 109.59042 * 120.28155 * 2 1 3 5 5 C 1.53039 * 109.31505 * 174.42449 * 4 2 1 6 6 C 1.53039 * 109.53857 * 298.63510 * 5 4 2 7 7 H 1.09008 * 109.49492 * 301.38317 * 6 5 4 8 8 N 1.46496 * 109.49811 * 181.31776 * 6 5 4 9 9 C 1.34777 * 119.99867 * 155.06397 * 8 6 5 10 10 O 1.21604 * 120.00185 * 0.02562 * 9 8 6 11 11 C 1.47448 * 119.99779 * 179.97438 * 9 8 6 12 12 C 1.38948 * 121.17084 * 0.02562 * 11 9 8 13 13 N 1.32192 * 121.31689 * 180.27477 * 12 11 9 14 14 C 1.31204 * 123.70088 * 359.45225 * 13 12 11 15 15 C 1.40388 * 120.90858 * 0.53979 * 14 13 12 16 16 C 1.40390 * 122.14134 * 179.72400 * 15 14 13 17 17 C 1.36228 * 119.48901 * 180.02562 * 16 15 14 18 18 C 1.39292 * 121.10522 * 359.97438 * 17 16 15 19 19 C 1.36440 * 120.94659 * 0.02562 * 18 17 16 20 20 C 1.39694 * 119.43807 * 0.02562 * 19 18 17 21 21 C 1.53195 * 109.34082 * 61.34577 * 6 5 4 22 22 N 1.46925 * 109.58797 * 239.57274 * 2 1 3 23 23 C 1.36937 * 120.62918 * 6.59933 * 22 2 1 24 24 H 1.07999 * 120.00201 * 330.15952 * 23 22 2 25 25 C 1.38810 * 119.99867 * 150.16393 * 23 22 2 26 26 N 1.31624 * 120.00208 * 344.49618 * 25 23 22 27 27 Si 1.86801 * 120.00153 * 164.49555 * 25 23 22 28 28 H 1.48503 * 109.47107 * 359.97438 * 27 25 23 29 29 H 1.48497 * 109.47384 * 119.99851 * 27 25 23 30 30 H 1.48504 * 109.47224 * 240.00004 * 27 25 23 31 31 H 1.08996 * 109.47284 * 299.71455 * 1 2 3 32 32 H 1.08995 * 109.47660 * 59.71848 * 1 2 3 33 33 H 1.09008 * 109.47062 * 179.72021 * 1 2 3 34 34 H 1.08997 * 109.49831 * 54.47053 * 4 2 1 35 35 H 1.09005 * 109.49768 * 294.37782 * 4 2 1 36 36 H 1.08999 * 109.45994 * 178.61583 * 5 4 2 37 37 H 1.08999 * 109.44933 * 58.64671 * 5 4 2 38 38 H 0.97001 * 120.00052 * 335.06165 * 8 6 5 39 39 H 1.07998 * 119.34033 * 359.97438 * 12 11 9 40 40 H 1.08000 * 119.54781 * 180.28648 * 14 13 12 41 41 H 1.07999 * 120.25327 * 0.02562 * 16 15 14 42 42 H 1.07998 * 119.44877 * 179.97438 * 17 16 15 43 43 H 1.07996 * 119.52814 * 179.97438 * 18 17 16 44 44 H 1.08005 * 120.28073 * 180.02562 * 19 18 17 45 45 H 1.09003 * 109.57863 * 65.17087 * 21 6 5 46 46 H 1.08995 * 109.58749 * 185.59507 * 21 6 5 47 47 H 0.96992 * 119.99992 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8953 1.0269 0.0000 4 6 2.0436 -0.7277 1.2463 5 6 3.5675 -0.8464 1.1712 6 6 3.9570 -1.6656 -0.0614 7 1 3.4988 -2.6529 -0.0016 8 7 5.4143 -1.8053 -0.1152 9 6 5.9677 -2.8482 -0.7651 10 8 5.2575 -3.6731 -1.3073 11 6 7.4345 -2.9885 -0.8198 12 6 8.2690 -2.0601 -0.2095 13 7 9.5844 -2.1801 -0.2612 14 6 10.2022 -3.1657 -0.8682 15 6 9.4795 -4.1734 -1.5263 16 6 10.1139 -5.2364 -2.1885 17 6 9.3594 -6.1849 -2.8103 18 6 7.9681 -6.1185 -2.7999 19 6 7.3190 -5.0995 -2.1659 20 6 8.0623 -4.1092 -1.5191 21 6 3.4649 -0.9493 -1.3230 22 7 2.0225 -0.7010 -1.1936 23 6 1.1536 -1.1159 -2.1673 24 1 0.1397 -1.3829 -1.9083 25 6 1.5761 -1.1933 -3.4873 26 7 2.6867 -0.5928 -3.8592 27 14 0.5684 -2.1499 -4.7359 28 1 -0.6264 -2.7276 -4.0696 29 1 0.1358 -1.2385 -5.8256 30 1 1.3950 -3.2446 -5.3050 31 1 -0.3633 0.5094 0.8925 32 1 -0.3634 0.5182 -0.8874 33 1 -0.3633 -1.0277 -0.0050 34 1 1.6031 -1.7236 1.2935 35 1 1.7660 -0.1641 2.1370 36 1 3.9378 -1.3421 2.0685 37 1 4.0059 0.1490 1.0989 38 1 5.9809 -1.1471 0.3169 39 1 7.8342 -1.2212 0.3136 40 1 11.2817 -3.2000 -0.8649 41 1 11.1918 -5.3015 -2.2048 42 1 9.8481 -7.0022 -3.3199 43 1 7.3949 -6.8842 -3.3014 44 1 6.2398 -5.0588 -2.1642 45 1 3.9902 -0.0005 -1.4326 46 1 3.6517 -1.5757 -2.1952 47 1 2.9817 -0.6466 -4.7816 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001072092766.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:14:57 Heat of formation + Delta-G solvation = 42.600281 kcal Electronic energy + Delta-G solvation = -29438.205422 eV Core-core repulsion = 25586.284937 eV Total energy + Delta-G solvation = -3851.920485 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -40.92548 -39.26609 -37.59286 -37.44171 -34.51219 -32.92777 -32.76363 -31.27388 -30.99005 -29.92186 -29.39166 -26.19030 -25.23416 -24.52039 -23.58533 -22.78453 -22.26511 -20.83629 -20.30572 -19.29181 -18.09608 -17.47361 -17.40869 -16.43942 -15.99110 -15.50486 -15.17882 -14.94918 -14.75441 -14.36533 -13.98043 -13.85839 -13.78716 -13.69158 -13.36741 -13.25820 -12.90359 -12.73753 -12.39289 -12.28201 -12.02615 -11.85036 -11.53180 -11.41950 -11.13085 -10.89799 -10.72546 -10.54037 -10.39832 -10.25497 -10.12632 -10.00853 -9.93787 -9.67452 -9.46855 -9.20715 -9.19078 -8.63678 -8.42417 -8.18947 -6.60590 -5.74140 -3.18949 -0.02114 0.77017 1.60596 2.79725 3.28559 3.37537 3.42406 3.49642 3.50884 4.02490 4.11556 4.40299 4.52362 4.57624 4.58042 4.75222 4.93710 5.06826 5.13565 5.31824 5.36178 5.37826 5.43913 5.53838 5.57896 5.64525 5.66717 5.84570 5.95509 5.98820 6.09440 6.24151 6.26999 6.28643 6.38581 6.40087 6.42923 6.46519 6.50977 6.62321 6.70885 6.76973 6.91934 7.04487 7.12684 7.30369 7.72178 7.73044 7.81116 7.88052 8.48934 8.53317 9.24631 9.88875 10.44379 11.34057 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.012369 B = 0.003496 C = 0.002924 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2263.177076 B = 8007.832834 C = 9574.498721 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.165 3.835 3 H 0.025 0.975 4 C -0.126 4.126 5 C -0.117 4.117 6 C 0.116 3.884 7 H 0.084 0.916 8 N -0.711 5.711 9 C 0.562 3.438 10 O -0.524 6.524 11 C -0.160 4.160 12 C 0.114 3.886 13 N -0.496 5.496 14 C 0.168 3.832 15 C -0.120 4.120 16 C -0.094 4.094 17 C -0.117 4.117 18 C -0.102 4.102 19 C -0.105 4.105 20 C 0.010 3.990 21 C 0.169 3.831 22 N -0.583 5.583 23 C -0.253 4.253 24 H 0.071 0.929 25 C 0.007 3.993 26 N -0.900 5.900 27 Si 0.899 3.101 28 H -0.277 1.277 29 H -0.291 1.291 30 H -0.289 1.289 31 H 0.038 0.962 32 H 0.061 0.939 33 H 0.053 0.947 34 H 0.061 0.939 35 H 0.055 0.945 36 H 0.051 0.949 37 H 0.059 0.941 38 H 0.392 0.608 39 H 0.158 0.842 40 H 0.164 0.836 41 H 0.133 0.867 42 H 0.126 0.874 43 H 0.128 0.872 44 H 0.168 0.832 45 H 0.018 0.982 46 H 0.093 0.907 47 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.276 -6.162 8.315 17.633 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.058 3.942 3 H 0.043 0.957 4 C -0.166 4.166 5 C -0.155 4.155 6 C 0.012 3.988 7 H 0.102 0.898 8 N -0.361 5.361 9 C 0.348 3.652 10 O -0.401 6.401 11 C -0.165 4.165 12 C -0.031 4.031 13 N -0.204 5.204 14 C -0.004 4.004 15 C -0.123 4.123 16 C -0.114 4.114 17 C -0.135 4.135 18 C -0.121 4.121 19 C -0.122 4.122 20 C 0.005 3.995 21 C 0.042 3.958 22 N -0.306 5.306 23 C -0.383 4.383 24 H 0.088 0.912 25 C -0.192 4.192 26 N -0.544 5.544 27 Si 0.729 3.271 28 H -0.202 1.202 29 H -0.218 1.218 30 H -0.215 1.215 31 H 0.057 0.943 32 H 0.080 0.920 33 H 0.072 0.928 34 H 0.080 0.920 35 H 0.074 0.926 36 H 0.070 0.930 37 H 0.078 0.922 38 H 0.226 0.774 39 H 0.175 0.825 40 H 0.181 0.819 41 H 0.151 0.849 42 H 0.144 0.856 43 H 0.146 0.854 44 H 0.185 0.815 45 H 0.036 0.964 46 H 0.112 0.888 47 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 14.120 -6.006 8.216 17.405 hybrid contribution -0.494 -0.706 -0.987 1.310 sum 13.626 -6.712 7.228 16.822 Atomic orbital electron populations 1.21798 0.95975 1.01436 1.00172 1.20491 0.93100 0.93556 0.87039 0.95732 1.22044 0.94191 1.01361 0.98961 1.21687 0.97526 0.99667 0.96631 1.22067 0.77155 1.01114 0.98507 0.89753 1.46015 1.08942 1.26117 1.55031 1.17741 0.86313 0.82001 0.79169 1.90673 1.62708 1.41918 1.44834 1.22078 0.94594 0.97409 1.02455 1.22720 0.88467 0.96761 0.95110 1.67077 1.11472 1.23597 1.18207 1.23230 1.00136 0.87535 0.89462 1.19007 0.93225 0.98218 1.01812 1.20913 0.99903 0.93450 0.97153 1.20986 0.94178 0.99058 0.99322 1.21199 0.94430 0.98343 0.98124 1.21911 1.03413 0.92217 0.94680 1.18944 0.91979 0.93584 0.94992 1.21070 0.83652 0.96923 0.94167 1.44023 1.02592 1.64612 1.19401 1.19174 0.95082 1.38011 0.85985 0.91176 1.25087 0.97771 0.99279 0.97045 1.70012 1.24091 1.43646 1.16605 0.86281 0.79642 0.79708 0.81490 1.20186 1.21793 1.21530 0.94343 0.92013 0.92776 0.92041 0.92616 0.92988 0.92188 0.77418 0.82528 0.81850 0.84898 0.85619 0.85360 0.81480 0.96441 0.88847 0.93781 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.54 7.95 37.15 0.30 -2.25 16 2 C 0.16 3.34 3.50 -67.60 -0.24 3.10 16 3 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 4 C -0.13 -2.10 5.37 -26.61 -0.14 -2.25 16 5 C -0.12 -1.85 5.35 -26.69 -0.14 -1.99 16 6 C 0.12 2.22 2.60 -67.81 -0.18 2.05 16 7 H 0.08 1.82 7.58 -51.92 -0.39 1.43 16 8 N -0.71 -11.56 5.04 -54.76 -0.28 -11.84 16 9 C 0.56 10.04 7.74 -12.51 -0.10 9.95 16 10 O -0.52 -11.23 13.40 5.27 0.07 -11.16 16 11 C -0.16 -2.45 6.07 -102.66 -0.62 -3.07 16 12 C 0.11 1.48 10.71 -17.13 -0.18 1.29 16 13 N -0.50 -6.24 10.22 -12.58 -0.13 -6.37 16 14 C 0.17 1.80 11.00 -17.01 -0.19 1.61 16 15 C -0.12 -1.44 5.74 -106.89 -0.61 -2.05 16 16 C -0.09 -0.89 9.82 -39.50 -0.39 -1.27 16 17 C -0.12 -1.13 9.94 -39.91 -0.40 -1.52 16 18 C -0.10 -1.19 9.96 -39.84 -0.40 -1.59 16 19 C -0.10 -1.57 9.32 -39.69 -0.37 -1.94 16 20 C 0.01 0.15 5.91 -104.74 -0.62 -0.46 16 21 C 0.17 4.05 4.86 -3.71 -0.02 4.03 16 22 N -0.58 -14.40 2.99 -164.78 -0.49 -14.89 16 23 C -0.25 -6.89 8.58 -15.06 -0.13 -7.02 16 24 H 0.07 1.87 6.23 -52.49 -0.33 1.54 16 25 C 0.01 0.20 4.94 -17.43 -0.09 0.12 16 26 N -0.90 -26.66 11.23 55.49 0.62 -26.04 16 27 Si 0.90 22.32 29.58 -169.99 -5.03 17.29 16 28 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 29 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 30 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 31 H 0.04 0.59 8.14 -51.93 -0.42 0.16 16 32 H 0.06 1.24 7.67 -51.93 -0.40 0.85 16 33 H 0.05 1.03 7.40 -51.92 -0.38 0.64 16 34 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 35 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 36 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 37 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 38 H 0.39 5.01 6.71 -40.82 -0.27 4.73 16 39 H 0.16 1.63 6.44 -52.49 -0.34 1.29 16 40 H 0.16 1.10 8.06 -52.49 -0.42 0.68 16 41 H 0.13 0.79 8.06 -52.49 -0.42 0.36 16 42 H 0.13 0.84 8.06 -52.49 -0.42 0.42 16 43 H 0.13 1.25 8.06 -52.49 -0.42 0.82 16 44 H 0.17 2.91 5.24 -52.48 -0.28 2.63 16 45 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 46 H 0.09 2.65 6.15 -51.93 -0.32 2.33 16 47 H 0.25 7.30 8.31 -40.82 -0.34 6.96 16 LS Contribution 374.07 15.07 5.64 5.64 Total: -1.00 -33.29 374.07 -10.60 -43.89 By element: Atomic # 1 Polarization: 13.24 SS G_CDS: -6.49 Total: 6.75 kcal Atomic # 6 Polarization: 1.24 SS G_CDS: -4.51 Total: -3.27 kcal Atomic # 7 Polarization: -58.86 SS G_CDS: -0.27 Total: -59.14 kcal Atomic # 8 Polarization: -11.23 SS G_CDS: 0.07 Total: -11.16 kcal Atomic # 14 Polarization: 22.32 SS G_CDS: -5.03 Total: 17.29 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -33.29 -10.60 -43.89 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001072092766.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.489 kcal (2) G-P(sol) polarization free energy of solvation -33.291 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.199 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.599 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.889 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.600 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds